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#710 (Oct 20, 2026, 3:11:09 AM)

Clubb params 1d to 2d fix (#1392)
( 8369512 )
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#709 (Oct 19, 2026, 3:11:08 AM)

Define when to declare bit-changing commits (#1403)
( ccafe4f )
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Add reusable case runners for timing (#1400)
( 4f8368a )
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Add JAX timing and profiling (#1393)
( ec5e807 )
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#708 (Oct 18, 2026, 3:11:07 AM)

Remove the JAX error-message code registry (#1401)
( aa8c2aa )
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Restrict BIT_CHANGING guidance to Fortran result changes (#1399)
( 6e48f97 )
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#707 (Oct 17, 2026, 3:11:08 AM)

Add CLUBB documentation skills (#1397)
( c179bae )
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Add Jenkins workflows and branch finalization guidance (#1396)
( eb23a4c )
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Reset microphysics defaults when initializing another case (#1398)
( d9e8b95 )
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Restore missing debug printouts in JAX core (#1390)
( c47faf3 )
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#706 (Oct 16, 2026, 3:11:10 AM)

Consolidate CLUBB workflows into skills (#1394)
( 09499c4 )
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#705 (Oct 14, 2026, 3:11:08 AM)

Add blank line to trigger Jenkins tests
( af934ad )
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Fixed bug in cubic equation solve function. Only relevant if pdf is L… (#1387)
( a8c9529 )
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#704 (Oct 13, 2026, 3:11:06 AM)

Add CLUBB commit and PR writing guidance (#1391)
( fc9087d )
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Fix arm97+l do expldiff rtm thlm+set edsclrm f early (#1386)
( 4292a70 )
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#703 (Oct 9, 2026, 3:11:10 AM)

Always do idiot-proofing of flags in check_clubb_settings_api
( 9429ba2 )
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#702 (Oct 8, 2026, 3:11:10 AM)

Use JAX in tuner (#1383)
( 9a1b8b2 )
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Add JSON case definitions and Dash case editor (#1389)
( 5f8b57f )
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Run JAX statistics consistency with an explicit rounding tolerance (#1385)
( 166ec21 )
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Run timestep sweep tests with JAX (#1384)
( 341cac0 )
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Add JAX comparison plots
( e92c2f2 )
Gunther Huebler at

#701 (Oct 7, 2026, 3:11:10 AM)

Support reusable JAX driver initialization and runtime batches (#1380)
( 56e1502 )
noreply at
Port JAX restart initialization and test normal and SILHS continuation (#1381)
( 7666fd0 )
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Port standalone JAX loss evaluation and consistency checks (#1382)
( 04ff5df )
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#700 (Oct 6, 2026, 12:04:01 PM)

Fix OpenMP GPU host_data conversion
( e83e7d6 )
Gunther Huebler at
AMD/ROCM Support for Jax (#1376)
( da614f8 )
noreply at
Prune inherited JAX pytests and remove binding dependencies (#1379)
( 350a98e )
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#697 (Oct 5, 2026, 3:11:07 AM)

Improve agent workflow discovery and completion evidence (#1375)
( d1c3f80 )
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Jax silhs (#1372)
( f51ab96 )
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Clarify current SILHS comparison limits
( 9233e34 )
Gunther Huebler at
Organize pytest admission, ownership and Jenkins coverage (#1377)
( 9afedd8 )
noreply at
Add hierarchical JSON statistics selection and Dash editor (#1378)
( feb2438 )
noreply at

#696 (Oct 3, 2026, 7:57:38 PM)

Serialize NetCDF statistics output across OpenMP threads
( 5a618af )
Gunther Huebler at
Standardize script arguments (#1373)
( 1d1abb1 )
noreply at

#695 (Oct 3, 2026, 3:11:08 AM)

Jenkins test cleanup (#1371)
( 01b5fa7 )
noreply at
Run Jenkins tuner commands with the project Python environment
( 31c3327 )
Gunther Huebler at
Initialize the project Python environment in loss and tuner runners
( ec38f6a )
Gunther Huebler at

#694 (Oct 2, 2026, 3:11:09 AM)

Fail bindiff on shape mismatches; optionally reject extra variables (#1370)
( d7b8c3f )
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Adding Microhpysics to JAX (#1362)
( 70c5581 )
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#693 (Oct 1, 2026, 3:11:07 AM)

Venv improvement (#1367)
( fbd75c6 )
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Update selected install with command-line builds (#1369)
( f5f8f9c )
noreply at
Making README a README.md
( b9b446d )
Gunther Huebler at
Rename derived-parameter routine across CLUBB interfaces
( 09639f3 )
Gunther Huebler at

#692 (Sep 29, 2026, 3:11:07 AM)

Remove upsilon 0 and 1 if branches (#1365)
( a482646 )
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Restart clubb 2d arr slicing fix (#1366)
( 89be3d5 )
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#691 (Sep 25, 2026, 3:11:08 AM)

lil cleanup without directory refactoring done (#1364)
( 8f4f601 )
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#690 (Sep 24, 2026, 3:11:07 AM)

Adding a stage in the jax test to just do a basic run with standard_stats
( 8b60ee7 )
Gunther Huebler at

#689 (Sep 23, 2026, 3:11:08 AM)

F90 fix multicol+l add dycore grid (#1363)
( eb20e09 )
noreply at
Delete utilities/check_division.py
( bc8d707 )
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#688 (Sep 19, 2026, 3:11:06 AM)

Dash Improvements (#1360)
( af35e52 )
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Improving README section for column mirror test
( 5b5bf5f )
Gunther Huebler at
Making certain things differentiation safe, various parts had issues with sqrt or divisions that needed clipping for reverse mode calcualtions. Lot's of code sections seemed to already have worked around this with a safe_sqrt method (or some variation) that I standardized and put in advance_helper. (#1361)
( 77b73e2 )
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#687 (Sep 18, 2026, 3:11:07 AM)

Jax integration (#1356)
( 17b29a7 )
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#686 (Sep 17, 2026, 3:11:07 AM)

Test different f90 vs jax flags (#1357)
( 3a0c0fb )
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Consolidating column mirror test functionality into the test script itself - now the script does it all, no need to configure/build/run anymore. Also hugely improving comments and explainations
( e2f38c2 )
Gunther Huebler at

#685 (Sep 16, 2026, 3:11:09 AM)

Making column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug
( 9baabf2 )
Gunther Huebler at
Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally.
( 26cfce3 )
Gunther Huebler at
Fixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358)
( 37da5d2 )
noreply at

#684 (Sep 9, 2026, 3:11:09 AM)

renamed jax jenkins test to clubb_jax_tests
( ff0eeed )
Daniel Ebel at

#683 (Sep 8, 2026, 3:11:09 AM)

Little OpenACC fixes for microphys code RESOLVED:900681c91bdbdf8d6cd069bab01663ebac1a3279
( ed96b20 )
Gunther Huebler at

#682 (Sep 6, 2026, 3:11:09 AM)

Microphys loop push (#1355)
( 900681c )
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#681 (Sep 3, 2026, 3:11:06 AM)

Clubb JAX (#1351)
( 53920ce )
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#680 (Aug 29, 2026, 3:11:06 AM)

Adding -debug to branch vs master bindiff test, this is to turn off compiler optimizations that can cause innocent changes to cause tiny differences
( 2cd63f3 )
Gunther Huebler at

#679 (Aug 27, 2026, 3:11:06 AM)

Attempted fix for Jenkins clubb_BFB_gfortran_test to include "bomex_5day_4scam" (#1349)
( 3a5ea18 )
Trevor Hancock at

#678 (Aug 26, 2026, 3:11:06 AM)

Adding 'bomex_5day_4scam' to MIN_CASES for Jenkins clubb_BFB_gfortran_test. This is BIT_CHANGING.
( 49b28e5 )
Trevor Hancock at
Added blank line in order to run Jenkins test
( 313fc42 )
Trevor Hancock at
Add blank line in order to trigger Jenkins tests
( 55a6f49 )
noreply at
Bug fix: the i in rho is the column dimension, not time dimension. Since this fixes a bug, it is technically BIT_CHANGING
( 639e840 )
Gunther Huebler at

#677 (Aug 25, 2026, 3:11:06 AM)

Fixed clubb python (#1346)
( d7fa9a7 )
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Remove a blank line in order to trigger nightly tests
( b2993e0 )
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#676 (Aug 22, 2026, 3:11:08 AM)

Move readiopdata_core_module.F90 to a subdirectory for use with git-subtree
( bc33760 )
isenfireldc at
Updates to readiopdata_core and corresponding calls (#178)
( 7e7eac0 )
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Bring readiopdata changes into master (#1343)
( 4aa411a )
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Previous commit improved the robustness of -override option and teased out a couple bugs in tests, causing them to fail. This adds the ability to specify which namelist an override goes in if there's no associated key to replace, the failing tests can be fixed by making use of this. One test is fixed here, and the other needed a change in a BFB config hosted on the jenkins server.
( 1f4ec89 )
Gunther Huebler at
Removing unused dependency that can cause compilation to fail - seems compiler/build system dependent
( 1b17c7e )
Gunther Huebler at
Removed readiopdata_core to prepare for git subtrees
( ec70668 )
Trevor Hancock at
Add blank line to trigger gitUpdateScripts
( e49f15d )
noreply at
Remove blank line to trigger nightly tests and gitUpdateScripts
( 1e0e2db )
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#675 (Aug 21, 2026, 3:11:06 AM)

Improve Dash workflows and broker services (#1342)
( 1db1e01 )
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#674 (Aug 14, 2026, 3:11:07 AM)

Dash profiling tab (#1340)
( e0ffe41 )
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#673 (Aug 12, 2026, 3:11:09 AM)

Dash improvement to how dash+broker is managed, also adding config save button to run tab
( a2e1a52 )
Gunther Huebler at
Little bug fix for new save config feature
( bdb4814 )
Gunther Huebler at
Little improvement to convergence test - it makes nicer plots and reports the 4 and 8 point fitted slopes. The pass/fail criteria remains unchanged, so this is just a diagnostic improvement
( 992b338 )
Gunther Huebler at

#672 (Aug 11, 2026, 3:11:06 AM)

Fill holes tab (#1339)
( c292c6c )
noreply at

#671 (Aug 6, 2026, 3:11:09 AM)

Small improvements to dash app, mainly plots tab output picker
( 110ac18 )
Gunther Huebler at

#670 (Aug 5, 2026, 3:11:08 AM)

Mainly dash updates and a little source changes to improve parameter/flag checking. See https://github.com/larson-group/clubb/pull/1336 for details
( 4b6a1f2 )
Gunther Huebler at

#669 (Jul 29, 2026, 3:11:06 AM)

Recently a commit removed the l_tke_aniso flag, which is BFB unless that flag is enabled. That flag was used in the clubb_BFB_varying_flags_gfortran_test, causing it to fail even though we don't care since it only failed for a removed flag, so RESOLVED:8ab3902e812c2883976b4f1f57c085d682666d92
( c15480a )
Gunther Huebler at
The old mixing length calculation seems to be making dycoms2_rf02 fail when using the bicgstab solver. This case was always unstable with bicgstab, so it seemed more like luck before that it was passing. This change just removes the failed output data to prevent pyplotgen from crashing
( 034f619 )
Gunther Huebler at

#668 (Jul 28, 2026, 3:11:09 AM)

Archiving experimental files that were used to explore some crazy PDF diagnosis methods. Much of this is sporatic LLM generated code and reports. These two methods were tested and did work well when using LES input to model the PDF, but were extemely noisy and unstable in free running clubb. The 'parcel tracking' one performs a mixing-length-like calculation to evolve a persistent 3rd gaussian, then computes a residual ADG1 pair to balance everything out and adhere to clubbs predicted moments. The second one (dubbed trivariate even though they're technically all trivariate) is a 2 Gaussian method that allows for many more degrees of freedom in how we place Gaussian centers and allocate covariance - it does this in part by taking into account rt and thl skewness, which require calculating rtp3 and thlp3. This trivate actually does really well when modelled using LES data, but it's heavy reliance on xp3 terms makes it extremely noisy and bad in clubb - this is why this code also includes a much more sophisticated (and barely tested) advance_xp3_module.F90, as an attempt to make this less worse for the trivariate pdf.
( bf9986a )
Gunther Huebler at
Fixing bug in advance_xp3 code. This is BFB because advance_xp3 is hardcoded to false.
( 765ae7c )
Gunther Huebler at

#667 (Jul 26, 2026, 3:11:07 AM)

Setting l_diag_Lscale_from_tau to false by default, and changing it to true in the flag set list the run_bindiff_w_flags test uses so that we keep testing the tau code nightly. This flag changes answers, so this is BIT_CHANGING.
( 02babc6 )
Gunther Huebler at
Setting l_diag_Lscale_from_tau to false caused dycoms2_rf01_fixed_sst to start failing the python vs fortran test. The differences were small and occured at a late timestep, so to fix the test I put a limiter on the number of timesteps the test runs.
( afbbe11 )
Gunther Huebler at
Removing the l_tke_aniso flag
( 8ab3902 )
Gunther Huebler at
Making les paths in _model.in files correct
( c743a14 )
Gunther Huebler at
Adding prompt to automate updating host models
( 7e9b710 )
Gunther Huebler at

#666 (Jul 21, 2026, 3:11:10 AM)

Clarify that the SILHS preprocessor flag in CLUBB is connected to the same flag in sam_clubb.
( 0ccbf4f )
noreply at

#665 (Jul 15, 2026, 3:11:06 AM)

Fixing SILHS usage so clubb/sam_clubb are compatible
( 84b8d67 )
Trevor Hancock at
Fixing error/diff with morrison microphysics
( 5d01201 )
Trevor Hancock at

#664 (Jul 14, 2026, 3:11:06 AM)

Removed option to disable silhs
( 53dc29a )
Trevor Hancock at
Revert changes to src/Microphys/Morrison_microphys/microphysics.F90
( c75d8e5 )
Trevor Hancock at

#663 (Jul 11, 2026, 3:11:10 AM)

Removed quad precision option (#1330)
( 2ed4d5c )
noreply at
Removed option to disable netcdf (#1331)
( a9a0786 )
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Removed option to disable silhs (#1332)
( 8e88e82 )
noreply at

#662 (Jul 8, 2026, 3:11:08 AM)

Fixing little path bug in the old tuner script and the thread test script
( b85bec9 )
Gunther Huebler at
Update dash app README with alternative run command
( 085d80e )
noreply at
Local python venv for dash app (#1329)
( 488f449 )
noreply at

#661 (Jul 7, 2026, 3:11:10 AM)

Remove old SVN version control identifier ($Id$) from tunable_parameters.in
( 0b2206b )
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Remove old SVN version control identifier from compatible_r8029/tunable_parameters.in
( 1ebd57b )
noreply at
Remove blank line to test git update scripts
( 15e88d1 )
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Clubb timer upgrade (#1328)
( d2415bd )
noreply at

#660 (Jul 5, 2026, 3:11:10 AM)

Tiny dash updates (#1327)
( be5e217 )
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#659 (Jul 3, 2026, 3:11:06 AM)

Tuner additions (#1324)
( 95d5d12 )
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#658 (Jul 2, 2026, 3:11:06 AM)

Dash compile tab (#1323)
( 3144689 )
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#657 (Jun 27, 2026, 3:11:06 AM)

Updating python contract audit to better detect API arg list discrepancies from the underlying fortran arg lists. Also adding a temporary handoff file and improving the python api fix shortcut
( 1ba1f81 )
Gunther Huebler at
Our argument_contract_audit.py script checks if the python_api matches the underlying fortran - this makes it more strict, and fixes many of the inconsistencies it found.
( 0da14a0 )
Gunther Huebler at
advance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of laziness
( e73f5d1 )
Gunther Huebler at
Improving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the process
( 1fa8fde )
Gunther Huebler at
Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test
( 7c08349 )
Gunther Huebler at

#656 (Jun 26, 2026, 1:06:53 AM)

Cleaning up run_scripts (#1320)
( e049563 )
noreply at
Removing jacobian code - it has not worked in a long time
( 5512bff )
Gunther Huebler at
Removing recl.inc, just dead code for an outdated issue
( e1ca539 )
Gunther Huebler at
Removing ifdefs that are only for E3SM and only on a specific machine
( 0ed1580 )
Gunther Huebler at
Removing the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model repos
( 86f7a60 )
Gunther Huebler at
Removing unused variables
( 955aa78 )
Gunther Huebler at

#655 (Jun 24, 2026, 3:11:10 AM)

Recently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5
( 2ca3ddc )
Gunther Huebler at

#654 (Jun 18, 2026, 3:11:10 AM)

Clubb loss driver (#1303)
( 2a334f8 )
noreply at

#653 (Jun 17, 2026, 3:11:08 AM)

Fixing bug that caused incorrect times to be written to netcdf in cases where stats_tout (output interval) > dt_main (timestep). This is BIT_CHANGING because of that, but only for the time variable (no field differences), and only for cases where we don't output each timestep.
( d4fbf46 )
Gunther Huebler at

#652 (Jun 12, 2026, 3:11:07 AM)

Update Jenkinsfile to match moved file
( a38df74 )
noreply at

#651 (Jun 11, 2026, 3:11:07 AM)

Deleted the old compile directory and docs directory (#1315)
( beffd89 )
noreply at
Update README, BUILD.md, and pyplotgen README.md (#1309)
( f6b2bf7 )
noreply at

#650 (Jun 10, 2026, 3:11:06 AM)

Removed/deleted outdated Matlab files (#1313)
( e969f3b )
noreply at
Removed/Deleted GrADS (.ctl, .dat) file format and reference to it (#1310)
( 7945eaa )
noreply at

#649 (Jun 5, 2026, 4:06:22 PM)

Removed perl and references to it (#1311)
( 039f9da )
noreply at

#648 (Jun 5, 2026, 3:11:10 AM)

Create README for python_sam_budgets_plotter folder
( 0d30e05 )
noreply at
Removed plotgen (#1312)
( 53893ca )
noreply at

#647 (Jun 4, 2026, 3:11:09 AM)

Clubb organization part3 (#1306)
( 0be32f9 )
noreply at
GPU async script (#1307)
( 8164a32 )
noreply at

#646 (Jun 3, 2026, 3:11:09 AM)

Update JAX conversion plan for clarity and detail
( 4f132e2 )
noreply at

#645 (May 29, 2026, 3:11:09 AM)

The last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0
( fb12cc1 )
Gunther Huebler at

#644 (May 28, 2026, 3:11:09 AM)

Removing unneccesary wp2_zt conversion that should've been removed already, but was accidentally added back in the last PR when trying to split BFB from non-BFB changes. This was an unused local variable so this does not affect anything.
( 73dc365 )
Gunther Huebler at

#643 (May 27, 2026, 3:11:08 AM)

Clubb organization part2 (#1304)
( 7b5214a )
noreply at

#642 (May 23, 2026, 3:11:05 AM)

Improvements to get clubb working on mac (#1305)
( f6869b0 )
noreply at

#641 (May 20, 2026, 3:11:06 AM)

Removing a couple variables from openacc statements to fix the clubb_driver_test - these were causing stats errors on the GPU for chi and chip2. This is technically BIT_CHANGING.
( 8244162 )
Gunther Huebler at

#640 (May 19, 2026, 3:11:10 AM)

Clubb organization part1 (#1302)
( a1acd2b )
noreply at

#639 (May 15, 2026, 3:11:06 AM)

This fixes the GPU BFB test that failed due to stats-only differences in rtm_ed and thlm_ed, and as a result is technically BIT_CHANGING. Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1
( 77d989d )
Gunther Huebler at

#638 (May 14, 2026, 3:11:07 AM)

advance_clubb_core cleanup (#1301)
( 34c6bb0 )
noreply at

#637 (May 8, 2026, 3:11:08 AM)

Switching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version.
( 2fe6e56 )
Gunther Huebler at

#636 (May 6, 2026, 3:11:07 AM)

Fixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b, and since this changes stats this is technically BIT_CHANGING"
( 5e3cfdd )
Gunther Huebler at

#635 (May 5, 2026, 3:11:06 AM)

Clip covar simplifications (#1297)
( 643d128 )
noreply at
Cmake netcdf fallback (#1294)
( f146255 )
noreply at

#634 (Apr 9, 2026, 3:11:07 AM)

Small fix to python api string handling. There was an issue that crept up with this when running on mitch - this should make the string/char array handling more robust
( a142b32 )
Gunther Huebler at
Python update (#1291)
( dc7d6ed )
noreply at
Remove line to test python scripts
( 0ab371b )
noreply at
Add blank line to test python scripts
( 2bac827 )
noreply at

#633 (Apr 8, 2026, 3:11:08 AM)

Adding err_info back to stats_end_timestep_api
( 4f6fb38 )
Gunther Huebler at
Fixing monoflux limiter test - there was a comment that was split across lines, which broke the test
( 3f40554 )
Gunther Huebler at
Removing unused variable
( 15adc84 )
Gunther Huebler at
Adding -fresh flag to compile.py to remove the previous build before compiling
( 475e768 )
Gunther Huebler at

#632 (Apr 7, 2026, 3:11:07 AM)

Space change for little test
( 9d56b4d )
Gunther Huebler at
Standards fix (#1288)
( 1e25b23 )
noreply at
Clubb f2py (#1274)
( 14926dd )
noreply at
Little fixes for python code
( 3b604ac )
Gunther Huebler at
Remove blank line to trigger git update script
( feb80b9 )
noreply at
Added blank line to trigger git update scripts
( 89a78e3 )
noreply at
Removed blank line to trigger git update scripts
( 9d53498 )
noreply at
Add blank line to trigger git update scripts
( ea158fd )
noreply at
Add blank line to trigger git update scripts
( 170ad3f )
noreply at
Add blank line to trigger git update scripts
( 8759ded )
noreply at

#631 (Apr 6, 2026, 3:11:07 AM)

Tiny fixes to scripts
( 0c70975 )
Gunther Huebler at
Making run_bindiff_w_flags.py faster by calling run_scm.py directly and parallelizing over all cases/flag sets, rather than just calling run_scm_all.py and parallelizing over each flag batch. Also fixing a little stats bug that caused the time string to have weird trailing characters, and removing a little states print
( b2e1709 )
Gunther Huebler at

#630 (Apr 5, 2026, 3:11:08 AM)

Varying bfb test (#1290)
( bcbcd98 )
noreply at

#629 (Mar 24, 2026, 3:11:09 AM)

A couple recent commits were missing their bit-changing messages because they were accidentally merged in early, see https://github.com/larson-group/clubb/pull/1286 - this commit is to add the resolve messages for the BFB test - RESOLVED:149e61f9bab26c5cb4518fd7bada9b1f4064482e RESOLVED:9f2b1e6c9370a897e1da1320521fbc27baf6ff31
( b047368 )
Gunther Huebler at
Little Fix (#1287)
( f5fb36f )
noreply at

#628 (Mar 23, 2026, 3:11:07 AM)

GPUizing most of radiation code
( 9f2b1e6 )
Gunther Huebler at
Fixing multicol radiation stats bug.
( 149e61f )
Gunther Huebler at
Adding max tasks option to dash app
( 0fc97f4 )
Gunther Huebler at
Increasing tolerance for check_flipped_results - this is used in the generalized_grid_test when we allow the matrices to be solved in different vertical modes
( d9d8878 )
Gunther Huebler at

#627 (Mar 19, 2026, 3:11:05 AM)

Clubb radiation update (#1283)
( cbaf3b7 )
noreply at
Dash app improvements (#1280)
( 49bd72c )
noreply at
Now that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test too
( d3c5a22 )
Gunther Huebler at
Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables.
( d20fd1d )
Gunther Huebler at

#626 (Mar 18, 2026, 3:11:08 AM)

Toolchain names were changed, so the references to them should've changed in the jenkins tests.
( 0212379 )
Gunther Huebler at
Toolchain names were changed, so the references to them should've changed in this test too.
( 36ca61e )
Gunther Huebler at
ADG1_w_closure consistency fix (#1282)
( c15b1d3 )
noreply at
Fixing clubb_error_handling_gfortran_test (#1281)
( bdee6e6 )
noreply at

#625 (Mar 17, 2026, 3:11:09 AM)

Forgot to add the changes to make concurrency safe - which caused random failures when using the new parallel run_scm_all.py with options like -out_dir or -ngrdcol
( 2108b26 )
Gunther Huebler at
Slightly more general compile setup (#1277)
( 6b49cb7 )
noreply at
GPTL cmake update (#1279)
( 3ebd14c )
noreply at

#624 (Mar 16, 2026, 3:11:07 AM)

Stability fix (#1276)
( bff619b )
noreply at

#623 (Mar 14, 2026, 3:11:06 AM)

Added blank line
( e589c52 )
Trevor Hancock at
Remove Id tag from LY93_pdf.F90 in order to trigger git update scripts
( a1dd370 )
noreply at
Remove unnecessary comments from est_kessler_microphys_module
( 02e8b46 )
noreply at

#622 (Mar 13, 2026, 3:11:06 AM)

Add blank line in order to trigger git updates (issue #848)
( 9c1d5ca )
noreply at

#621 (Mar 11, 2026, 3:11:07 AM)

New solvers by default (#1275) - BIT_CHANGING
( 983e04d )
noreply at

#620 (Mar 3, 2026, 3:11:07 AM)

Force-sync README to match SAM
( 967e4c0 )
root at
Add blank line to test python scripts
( 6340e0a )
noreply at
Added blank line to test python update scripts
( 8cb40c6 )
noreply at

#619 (Feb 24, 2026, 3:11:07 AM)

Added blank line to test new python scripts
( 3974c73 )
Trevor Hancock at
Added a space to test new python update scripts
( cee9567 )
Trevor Hancock at
Fixed space to match Clubb spacing
( d803a85 )
Trevor Hancock at
Reverting accidental changes
( 3031280 )
Gunther Huebler at
Legacy stats removal (#1273)
( 52de37f )
noreply at
Missed some wrf changes
( 1d2996e )
Gunther Huebler at

#618 (Feb 18, 2026, 12:22:07 AM)

New stats system (#1270)
( 3d4d74a )
noreply at
Fixing fire tuner
( b622e32 )
Gunther Huebler at

#617 (Feb 12, 2026, 3:11:07 AM)

Removed blank line to test python update scripts
( 92dfde3 )
Trevor Hancock at
Fixed double space to test updateClubbMorrison.py python script
( 5a252b6 )
Trevor Hancock at

#616 (Feb 10, 2026, 3:11:09 AM)

Added empty line to test update scripts
( ff3d91f )
Cole Pickett at

#615 (Feb 6, 2026, 3:11:11 AM)

Moving wp2sclrp, wpsclrp2, wpsclrprtp, and wpsclrpthlp to the zt netcdf output file, since those are zt variables. Also adding a missing variable, rcm_in_cloud, to all_stats.in and correcting a missing comma bug. This is technically BIT_CHANGING because the variables are moving files, but the stored data is identical from 1:nzt - the nzm level just had garbage for those variables and is now gone. (#1271)
( 678d409 )
noreply at

#614 (Jan 10, 2026, 3:11:08 AM)

GPU fixed and cgils_s6 fix
( 8033a14 )
Gunther Huebler at
Adding deallocation for fcor_y
( 1c7c6ce )
Gunther Huebler at
More small bug fixes
( d93dd4e )
Gunther Huebler at
More small bug fixes
( ba709f7 )
Gunther Huebler at
Another small gpu bug fix
( ba5dd96 )
Gunther Huebler at
Removing extra acc end statement
( f1b6cfe )
Gunther Huebler at

#613 (Jan 9, 2026, 3:11:07 AM)

Non trad coriolis (#1267)
( 4902a5c )
noreply at

#612 (Dec 18, 2025, 3:11:07 AM)

Fixes for fill_holes and edsclr code (#1266)
( 418c202 )
noreply at

#611 (Dec 11, 2025, 3:11:09 AM)

Grid reverse matrix test (#1265)
( 0959bb1 )
noreply at

#610 (Dec 5, 2025, 2:08:43 PM)

Add blank line to README.
( a559766 )
noreply at
BIT_CHANGING bug fix for the penta_lu solver, only BC when using penta_solve_method=2 (#1264)
( bba14c8 )
noreply at
Bicgstab addition (#1261)
( 14f5e6e )
noreply at
Small bug fix to make gfortran+debug happy, without the _core_rknd this could be a potential type error
( 988ea0f )
Gunther Huebler at

#609 (Nov 24, 2025, 3:11:10 AM)

Making update_xp2_mc work with either grid mode (#1263)
( d5703f0 )
noreply at
Improving variable name
( 0da744a )
Gunther Huebler at
Small bug fix, but this is BIT_CHANGING because it affects stats output. Some zm fields (w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm) were all nan in the netcdf output when l_call_pdf_closure_twice=.false., because those come from pdf_params_zm.
( 040e996 )
Gunther Huebler at

#608 (Nov 18, 2025, 7:09:34 AM)

Removing accidentally added files
( 61aa970 )
Gunther Huebler at

#606 (Nov 15, 2025, 3:11:10 AM)

Making clubb_at_least_debug_level not a device routine. It confuses the poor little nvidia compiler when compiling inside cam. Also making the compile script a little more robust.
( de8bbef )
Gunther Huebler at

#605 (Nov 14, 2025, 3:11:09 AM)

New fill_holes methods (#1262)
( 665f389 )
noreply at
Making compatible with new version of clubb (#167)
( 9745207 )
noreply at
Small bug fix in fill_holes_parallel on GPU
( 50a5528 )
Gunther Huebler at

#604 (Oct 9, 2025, 3:11:09 AM)

Adding Morrison_microphys folder inside Microphys and reflecting change in compilation files. This is to make this new structure work with the way we include Morrison code, which is brought in from sam_clubb via the updateClubbMorrison.sh found in sys_admin/gitUpdateScripts/
( ea0b892 )
Gunther Huebler at

#603 (Oct 6, 2025, 3:11:06 AM)

Clubb driver upgrades part2 (#1257)
( 1f751dd )
noreply at

#602 (Oct 4, 2025, 3:11:08 AM)

Must add -fopenmp back for now, since this is used for the openmp test and it also broke the BFB tests for an obnoxious reason - that test compiles each commit without cleaning the build, so the baseline commit had -fopenmp and compiled with openmp stuff enabled, but then the subsequent commits had it turned off, but no changes in the files, so it didn't recompile with it off, and only turned it off in the linking stage, causing a build error. RESOLVED:320551df13ee84bdb9280db0be788a36e1f03494 RESOLVED:6c0201d44694fadf7f4bb0d4d58c3a9871096a22 RESOLVED:26644de2ea83ee6335b273f54dd57afc8f6f4b0c
( df9e215 )
Gunther Huebler at

#601 (Oct 3, 2025, 3:11:07 AM)

Adding variables to openacc data statements. Without this, the code crashes when using the GPU with l_godunov_upwind_xpyp_ta=.true.
( eac573b )
Gunther Huebler at
Modifying compiler configurations (mainly optimization level) in order to prepare for switching scipts and tests to cmake, specifically separating out this BIT_CHANGING commit from the rest
( 320551d )
Gunther Huebler at
thlm_ed and rtm_ed caused GPU errors since those variables were added to a acc loop, but never added to the acc data statement. This change makes it so they're only calculated on the CPU, since they are only used for stats, fixing the issue without adding the GPU memory footprint.
( 26644de )
Gunther Huebler at
Adding -Mstack_arrays to the nvfortran flags causes us to use more stack space, which means we need to allow processes to use more stack space (when using lots of columns, since that increases memory footprint). We do by using using 'ulimit BIGNUMBER'.
( 6c0201d )
Gunther Huebler at

#600 (Oct 2, 2025, 3:11:06 AM)

Making restart test not overwrite time_initial. The time_initial should be defined by the _model.in file and not overwritten, but this script was setting time_initial to time_restart, which resulted in the initial iteration value (iinit) to be 1 in the restart regardless of the restart time.
( 1d2f7cf )
Gunther Huebler at
Making the l_random_k_lh_start set the random generator seed before generating a random. This should fix the generalized grid test, which failed for the only flag set that turned on l_random_k_lh_start. Before, the test passed because we used the same random seed for all timesteps, preventing differences in the random call. But now we use a different seed each timestep, causing differences. To ensure reproducibility, we use the seed each timestep to generate rand_pool, which is an effective solution, but we need to do that for the rand_integer_in_range call in the l_random_k_lh_start code for the same reason. Since this does change the random that comes out, this is BIT_CHANGING, but only for runs using both SILHS and l_random_k_lh_start=.true.
( def788b )
Gunther Huebler at

#599 (Oct 1, 2025, 3:11:06 AM)

SILHS reproducibility (#1258)
( 9fed3af )
noreply at

#598 (Sep 30, 2025, 3:11:07 AM)

Bug fix. This is BIT_CHANGING, but only on GPUs and only when l_soil_veg=.true. (which is only gabls3 currently).
( 15d2cb2 )
Gunther Huebler at

#597 (Sep 28, 2025, 3:11:08 AM)

Change tolerance in way that affects only single precision builds (#1256)
( 1bc1aba )
noreply at

#596 (Sep 27, 2025, 3:11:08 AM)

Remove module vars from grid_adaptation_module (#1255)
( 4aa7da3 )
noreply at

#595 (Sep 26, 2025, 3:11:08 AM)

Precip frac fix (#1254)
( 3162e68 )
noreply at

#594 (Sep 25, 2025, 3:11:08 AM)

The cmake update (#1253)
( 06288ac )
noreply at
Making cmake only optionally use ninja. Now we only use it if it's available.
( 85532cc )
Gunther Huebler at

#593 (Sep 24, 2025, 3:11:08 AM)

Adding expldiff budget terms for thlm and rtm (#1252)
( cfd3671 )
noreply at

#592 (Sep 15, 2025, 3:11:10 AM)

Raw-copy updating src/Morrison_microphys
( a21a3de )
Cole Pickett at

#591 (Aug 10, 2025, 3:11:07 AM)

Increase lh_num_samples to 64 for LBA case
( b5ec233 )
noreply at
Update License.txt in order to note that BIT_CHANGING:b5ec2335bc0cf95dbbe1f48a0043bb792a72d3c6
( 91ec079 )
noreply at

#590 (May 25, 2025, 3:11:06 AM)

Clean out clubb_G_unit_reverse_dir_grid_test folder before running Jenkins test
( 46cac27 )
noreply at

#589 (May 24, 2025, 3:11:07 AM)

Finished my notes, documentation, and instructions for the generalized
( dd5f915 )
bmg2 at

#588 (May 23, 2025, 3:11:07 AM)

I start adding some notes on grid generalization.
( ab83782 )
bmg2 at
fix precision error of reals
( 01cd6d5 )
noreply at
rename grid_adaptation and remapping modules
( f1798e4 )
0-freundlich-adenin at
add fix for grid generalization
( 003b6cf )
0-freundlich-adenin at

#587 (May 22, 2025, 3:11:08 AM)

Merge grid adaptation implementation (#1249)
( 25d5bed )
noreply at

#586 (May 20, 2025, 3:11:10 AM)

I am adding pass/fail statements specific to the generalized grid test
( c379fef )
bmg2 at
For the long-duration clubb_generalized_vertical_grid_test, I am
( ec0644c )
bmg2 at
zm and zt were mixed up in the error prints argument list.
( b5929aa )
bmg2 at

#585 (May 17, 2025, 3:11:08 AM)

I updated run_bindiff_w_flags_config_host_flags to add flag set 3,
( 6011fad )
bmg2 at

#584 (May 15, 2025, 3:11:09 AM)

Fix jenkins clubb error handling output (#1247)
( f9b793f )
noreply at

#583 (May 14, 2025, 3:11:10 AM)

Removed simple wrappers from clubb_api_module (#1245)
( 942e02a )
noreply at

#582 (May 10, 2025, 3:11:10 AM)

Fixed and equalized NaN checks in lapack_wrap (#1246)
( 1f2fc1f )
noreply at

#581 (May 7, 2025, 3:11:07 AM)

Cleaning up some grid generalization issues that were found within
( b7e8ad3 )
bmg2 at

#580 (May 3, 2025, 3:11:06 AM)

Run scm fixes (#1244)
( 1e73c9c )
noreply at
I am adding a new .json file for host model flags. Flag set 1 consists
( 9b42183 )
bmg2 at
I am adding a Jenkinsfile for a new CLUBB generalized vertical
( d1b42f2 )
bmg2 at
I am adding a second set of host flags as part of the generalized
( f1b430a )
bmg2 at
Fixing an error in the previous commit. (lol, good ol' find and replace)
( 6912ae1 )
bmg2 at

#579 (May 2, 2025, 3:11:07 AM)

Removed renaming operators `=>` and wrapper subroutines from silhs_api_module (#1240)
( 3a3e3d5 )
noreply at

#578 (Apr 30, 2025, 3:11:10 AM)

Changing readme to add BIT_CHANGING:71eb9b3c5fd65c33905f17be8476a1dea89a2511 since that commit was a bug fix, so technically it was bit changing.
( 4fb7b70 )
Gunther Huebler at

#577 (Apr 29, 2025, 3:11:06 AM)

Small bug fix that has somehow gone unfound until recently. RESOLVED:f9d92113871bdf87b5e3147db6740ab654dc0967
( 71eb9b3 )
Gunther Huebler at

#576 (Apr 27, 2025, 3:11:08 AM)

Technically, the following two commits are not BFB
( f9d9211 )
noreply at

#575 (Apr 26, 2025, 3:11:09 AM)

Running CLUBB with l_stability_correct_tau_zm = .true. now requires
( a36b7a6 )
bmg2 at
These changes were accidentally made during the previous commit. The are
( 9371045 )
bmg2 at

#574 (Apr 25, 2025, 3:11:10 AM)

Fix segfault involving initialization of CLUBB when l_add_dycore_grid=F
( e4035f7 )
Steffen Domke at
Removed unnecessary print statements in clubb_driver
( 6ae905d )
Steffen Domke at
Err code gpu fix (#1241)
( 28786c5 )
noreply at

#573 (Apr 24, 2025, 3:11:06 AM)

Err code struct (#1238)
( dbf71d4 )
noreply at
Fix that causes BFB GPU tests to break. We need to copy these variables to the CPU before outputtin to disk. It's very unclear why the BFB GPU test ever passed without this.
( 06dbd27 )
Gunther Huebler at

#572 (Apr 23, 2025, 3:11:06 AM)

I updated adj_low_res_nu for use with a generalized grid. It is
( cb9c724 )
bmg2 at
Since the call to adj_low_res_nu is not tested by CLUBB's main
( fa5edf3 )
bmg2 at

#571 (Apr 15, 2025, 3:11:09 AM)

Add a blank line to README in order to note BIT_CHANGING:969bc4aa2a1db2664c0f92b98d2df5544c554c32
( e25ec88 )
noreply at

#570 (Apr 10, 2025, 3:11:09 AM)

Clubb silhs gg (#1239)
( 2f9bef6 )
noreply at

#569 (Mar 29, 2025, 3:11:09 AM)

Hot fix to GPU code. These _init variables need to be copied to the GPU
( 13ad3cf )
Gunther Huebler at
Second hot fix for more _init variables that need to be copied in. RESOLVED:ed9ae72a5eb28dbc036dd3e14b9312eea840feac
( 9c51ff7 )
Gunther Huebler at
Third hotfix of the day. This last change teased out a sneaky potentially fatal bug for cases using l_cloud_sed=.true., making this a BIT_CHANGING fix. Also need to include BIT_CHANGING:13ad3cfe7872df2fe91250265f4a81baa621a882 because that was a fix to a fatal bug in some cases. Also including some other small fixes that weren't breaking any tests, but might've caused problems in the future.
( 84d6d62 )
Gunther Huebler at
Removing accidentally added file.
( 3cd302b )
Gunther Huebler at

#568 (Mar 28, 2025, 3:11:06 AM)

Clubb driver upgrades (#1225)
( ed9ae72 )
noreply at

#567 (Mar 26, 2025, 3:11:09 AM)

QuadTune: Read in obs for custom metrics automatically from obs file.
( 951970e )
Vince Larson at

#566 (Mar 25, 2025, 3:11:10 AM)

QuadTune: Rename "setUpInputs" to "setUpConfig". Rename other variables. Improve comments in quadtune_driver.py.
( 6efe77b )
Vince Larson at

#565 (Mar 23, 2025, 3:11:07 AM)

QuadTune: Create config file where a user can input "namelist" info about his obs and simulations. Also add an example config file so that the user can keep multiple namelists. Do minor refactorings.
( e15a1b9 )
Vince Larson at
QuadTune: Rename "linSoln" to "globTuned" in order to denote the global simulation result after tuning. Add docstrings to more functions.
( 53b8ea7 )
Vince Larson at
Clubb test correct gg (#1237)
( 969bc4a )
noreply at

#564 (Mar 22, 2025, 3:11:08 AM)

QuadTune: Move import statements to top of file. Move abbreviateParamsNames to set_up_inputs. Neaten source code a bit.
( b1e6e89 )
Vince Larson at

#563 (Mar 21, 2025, 3:11:09 AM)

QuadTune: Set plot-type flags in set_up_inputs.py and then feed them into create_nonbootstrap_figs.py.
( eb8cc04 )
Vince Larson at

#562 (Mar 20, 2025, 3:11:10 AM)

QuadTune: Improve plot titles, add (a), (b), (c) to subpanels, etc.
( bad4787 )
Vince Larson at
QuadTune: Remove dependence of QuadTune code on file analyze_sensitivity_matrix.py.
( 10b86f1 )
Vince Larson at
QuadTune: Rename files.
( dc67b8c )
Vince Larson at

#561 (Mar 16, 2025, 3:11:09 AM)

QuadTune: Shut off bootstrap fig display, set useBootstrap=F, and improved fonts on scatterplots.
( 0dc4761 )
Vince Larson at

#560 (Mar 15, 2025, 3:11:05 AM)

Updating the Jenkinsfile for the CLUBB generalized vertical grid test
( 78cba21 )
bmg2 at
Revert "When the run_clubb_w_varying_flags.py script is running a generalized"
( e4aa2c3 )
bmg2 at

#559 (Mar 14, 2025, 3:11:06 AM)

One of the previous issues with this python script is that it
( 108815d )
bmg2 at
I am setting the exit_code for the python script to be based on
( 2516820 )
bmg2 at
I added some helpful print statements and imported "sys" for the
( fd6d3ca )
bmg2 at
Changing the generalized vertical grid Jenkins test to use the new
( 1ae4023 )
bmg2 at
When the run_clubb_w_varying_flags.py script is running a generalized
( 02f49f2 )
bmg2 at

#558 (Mar 13, 2025, 3:11:07 AM)

I added a stripped down version of the run_bindiff_w_flags.py script
( 9cbf318 )
bmg2 at

#557 (Mar 12, 2025, 3:11:08 AM)

The generalized grid test should not output a clubb fatal error when it
( b01f0e8 )
bmg2 at

#556 (Mar 8, 2025, 3:11:08 AM)

Revert "I have no idea if it's appropriate to include gr in this statment,"
( c226fa8 )
bmg2 at
Added a special G unit Jenkins test for the Reverse Direction
( bd0d4f7 )
bmg2 at
I accidentally committed G_unit_tests.in as part of my previous commit.
( 9a6ea30 )
bmg2 at
I forgot to update the test name in the Jenkinsfile.
( 62529da )
bmg2 at
I discovered that I inadvertently change an $acc statement that
( 4ad28ab )
bmg2 at

#555 (Mar 6, 2025, 3:11:08 AM)

Added some missing acc parallel statments around some the loops
( 892097d )
bmg2 at
Fixed a bug
( 1177fba )
bmg2 at
I have no idea if it's appropriate to include gr in this statment,
( d2b125b )
bmg2 at

#554 (Mar 5, 2025, 2:38:47 PM)

Fixed Jenkins api_commitment_test (#1236)
( d824f94 )
noreply at

#553 (Mar 5, 2025, 2:15:40 PM)

Eliminate GOTO statement in stats_clubb_utilities (#1233)
( 5f09075 )
noreply at
Updated Jenkins api_commitment_test to python3 (#1235)
( 4508338 )
noreply at

#552 (Mar 5, 2025, 3:11:09 AM)

I changed the variable type within grid function flip from dp to
( 1c06485 )
bmg2 at
Fixed a compiling issue with CAM-CLUBB.
( 0f3bc9f )
bmg2 at
Hopefully this helps the cpu vs. gpu tests.
( 4c5fa8c )
bmg2 at
There were some flips inside the stats code for BUGSrad that required
( 73cc3cb )
bmg2 at

#551 (Mar 4, 2025, 3:11:10 AM)

Updated calls to some CLUBB subroutines in the wake of recent CLUBB
( fe14f38 )
bmg2 at

#550 (Mar 2, 2025, 3:11:07 AM)

Generalized grid (#1230)
( be90159 )
noreply at

#549 (Mar 1, 2025, 3:11:08 AM)

Regrouped to decrease the total number of runs.
( 1aa85b7 )
bmg2 at

#548 (Feb 28, 2025, 3:11:09 AM)

Added a .json file for run_bindiff_w_flags that checks most of
( 97516ee )
bmg2 at

#547 (Feb 27, 2025, 3:11:10 AM)

add requirements file for run_bindiff_w_flags script
( cbb9ade )
noreply at
Removed renaming operators `=>` from clubb_api_module (#1232)
( 1fcbf04 )
noreply at

#546 (Feb 22, 2025, 3:11:06 AM)

fix variable l_sfc_already_initialized (#1231)
( 236d612 )
noreply at
Getting rid of a couple of worthless lines of code. It's possible this
( 4b242c0 )
bmg2 at
Should just delete instead of commenting out.
( 808fa50 )
bmg2 at

#545 (Feb 21, 2025, 3:11:07 AM)

Revert clubb api module changes (#1228)
( 327bc1e )
noreply at
Fixed equality check in pdf_closure_module (#1229)
( 455fbc1 )
noreply at
add dycore grid with conservative remapping scheme
( 7783e3a )
noreply at

#544 (Feb 20, 2025, 3:11:08 AM)

Remove err code (#1218)
( c7ac128 )
noreply at
Renamed check_res to err_code in numerical_check.F90 for consistency (#1227)
( 0e45d98 )
noreply at

#543 (Feb 19, 2025, 3:11:08 AM)

Set l_wp2_fill_holes_tke to true by default (#1226)
( 9e59dc4 )
noreply at

#542 (Feb 14, 2025, 3:11:09 AM)

BIT_CHANGING bug fix that only affects l_t_dependent cases running with multiple columns, I detected this with cgils cases, but I'm not sure how it slipped through initially.
( 75cd543 )
Gunther Huebler at

#541 (Feb 8, 2025, 3:11:06 AM)

QuadTune: Made plot_PcSensMap work when len(varPrefixes) > 1.
( d969819 )
Vince Larson at
QuadTune: Merge in bootstrap sampling
( 112b1d1 )
noreply at
Swapping the loop order on a few kernels, I found this faster for the nvhpc compiler and it's BFB
( adb2c4b )
Gunther Huebler at

#540 (Feb 4, 2025, 3:11:10 AM)

Monoflux GPU optimization (#1221)
( e3707bd )
noreply at

#539 (Feb 2, 2025, 3:11:07 AM)

QuadTune: Add useLongTitle option, which adds extra information on the plotted quantity, if desired.
( 0159cfd )
Vince Larson at
QuadTune: Plot bias instead of negative bias on metricsBarChart and bias-vs-sensitivity plots.
( 9fbd3da )
Vince Larson at

#538 (Jan 26, 2025, 3:11:06 AM)

QuadTune: On matrix-eqn bar chart, plot only extraMetricsToPlot. Add sens-bias scatterplot of only extraMetricsToPlot. In parameter increments bar chart, change absolute values to squares.
( fe762cb )
Vince Larson at

#537 (Jan 24, 2025, 3:11:08 AM)

Slightly relaxing the convergence criteria to fix convergence test.
( 2fbf4c2 )
Gunther Huebler at

#536 (Jan 22, 2025, 3:11:06 AM)

Finally fixing gpu_diffness test (#1219)
( 316180d )
noreply at

#535 (Jan 17, 2025, 3:11:08 AM)

Added new hole-filling method which takes TKE from up2 and vp2 (#1217)
( e430c6b )
noreply at

#534 (Dec 20, 2024, 3:11:05 AM)

Fix binormal correlation clipping (#1199)
( 673beb0 )
noreply at

#533 (Dec 18, 2024, 3:11:07 AM)

QuadTune: Remedy loss function and facilitate plotting of special, non-20x20 regions (DYCOMS, HAWAII, etc.).
( cc24b72 )
Vince Larson at

#532 (Dec 17, 2024, 3:11:08 AM)

Changing a couple loop limits in mono flux limiter.
( ec06720 )
bmg2 at

#531 (Dec 14, 2024, 3:11:06 AM)

Recoded a loop within the mono flux limiter so that it's written
( 0b6031b )
bmg2 at
Changed some variable names so that it is clear that, while they contain
( e215a04 )
bmg2 at
Within the mono flux limiter, a thermodynamic-level variable needed to
( 2c420dc )
bmg2 at
I forgot to add the new variable to the Atlantic Coast Conference
( 7641404 )
bmg2 at

#530 (Dec 13, 2024, 3:11:09 AM)

QuadTune: Include special regions (DYCOMS, HAWAII, etc.), in addition to 20x20 regions. However, the weights are set to epsilon, which wrecks the loss calculation. This will have to be remedied later.
( 373be4b )
Vince Larson at

#529 (Dec 10, 2024, 3:11:09 AM)

QuadTune: Add map plots of "linSoln" output from global E3SM runs.
( c807b99 )
Vince Larson at

#528 (Dec 7, 2024, 3:11:07 AM)

Changed default setting of flag l_min_wp2_from_corr_wx to false (#1216)
( d7b7306 )
noreply at

#527 (Dec 6, 2024, 3:11:08 AM)

Added up2 and vp2 to calculation of wp2_min_array (#1215)
( 7b70366 )
noreply at
QuadTune: Add bar chart showing linear vs. nonlinear contributions of each parameter.
( eba3ae9 )
Vince Larson at

#526 (Dec 5, 2024, 3:11:09 AM)

QuadTune: 1) Add bar chart that shows |metric_changes| due to each parameter. 2) Fix colorbars on maps. 3) Allow download of hi-res figures. 4) Make background of scatterplots grey.
( 7f1ff52 )
Vince Larson at
Reduced the upper bound for wp2_min_array to 1.0 (#1214)
( 9509e1b )
noreply at

#525 (Dec 4, 2024, 3:11:10 AM)

Likely non-bit-changing housekeeping (#1213)
( 7447595 )
noreply at
Fix pyplotgen timeheight cmaps (#1212)
( afcbd64 )
noreply at

#524 (Dec 1, 2024, 3:11:07 AM)

QuadTune: 1) Change coloring of scatterpoints to represent either loss changes or residuals. 2) Add map of residuals to complement map of bias.
( 50fe6be )
Vince Larson at

#523 (Nov 28, 2024, 3:11:05 AM)

QuadTune: Added colorbars to regional map plots.
( 91d3158 )
Vince Larson at

#522 (Nov 23, 2024, 3:11:06 AM)

Multi col output update (#1211)
( 8572001 )
noreply at

#521 (Nov 20, 2024, 3:11:09 AM)

QuadTune: Plot a map of the change in the loss function for each region.
( 90da93a )
Vince Larson at
Fixed time-height plot colormaps (#1210)
( 9c04309 )
noreply at

#520 (Nov 19, 2024, 3:11:10 AM)

Clubb Driver Semi GPUization Part4 (#1209)
( bb0b6c6 )
noreply at

#519 (Nov 13, 2024, 3:11:07 AM)

Multi Column Mirror Test (#1206)
( c13dc43 )
noreply at

#518 (Nov 12, 2024, 3:11:08 AM)

As part of generalizing the code to work with both an ascending and
( c365e91 )
bmg2 at

#517 (Nov 9, 2024, 3:11:06 AM)

QuadTune: 1) Create new plot that shows tuning tradeoffs via U dot bias. 2) Improve bar chart showing the mean contribution of different parameters.
( fa4b24b )
Vince Larson at
Making a correction to the doubled plus sign from commit a1fcfe8.
( 2c53488 )
bmg2 at

#516 (Nov 8, 2024, 3:11:07 AM)

Moving Lscale from an acc create statement inside clubb to the acc output statement in clubb_api. This is bug fix that is BIT_CHANGING, but only for silhs cases running on the GPU. Also using this to add BIT_CHANGING:aff1bb12551c5b3a8ab1c4d773ef5c17fb96c53b, as that commit was BC but just missing the message.
( 90d139d )
Gunther Huebler at
Various Small Tweaks (#1205)
( a1fcfe8 )
noreply at

#515 (Nov 5, 2024, 3:11:09 AM)

QuadTune: Plot orange x on threeDot panels in order to represent what change QuadTune actually wants to make to the metrics.
( bedc6f8 )
Vince Larson at
Prescribe Forcings GPUization (#1204)
( aff1bb1 )
noreply at
QuadTune: Fix commit bug and add numXBoxes.
( 3301537 )
Vince Larson at

#514 (Nov 2, 2024, 3:11:07 AM)

Prescribe forcings loop pushing (#1201)
( 6536d39 )
noreply at

#513 (Oct 31, 2024, 3:11:09 AM)

BIT_CHANGING bug fix with soil veg (#1200)
( 6127c55 )
noreply at

#512 (Oct 29, 2024, 3:11:06 AM)

QuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations.
( e525bd0 )
Vince Larson at
QuadTune: Break out loss function contributions by metric and plot the metrics with the greatest improvements and degradations.
( d7d04ed )
Vince Larson at
Small improvements to bindiff script.
( 2651012 )
Gunther Huebler at

#511 (Oct 27, 2024, 3:11:09 AM)

QuadTune: Create 2 new plots.
( 0bb668e )
Vince Larson at

#510 (Oct 26, 2024, 3:11:07 AM)

QuadTune: Display maps of the first 4 SVD patterns using dash, rather than make_subplots.
( 81fa0e3 )
Vince Larson at

#509 (Oct 25, 2024, 3:11:07 AM)

I am making the loops for the wp3 ta term (using ADG1 PDF) symmetric.
( 9bf49fa )
bmg2 at
QuadTune: 1) Add beginnings of maps of SVD pattern, although this task is unfinished. 2) Normalize all regions by global mean, rather than normalizing each region separately. 3) Make sensitivities signed in sensitivity versus bias scatterplot.
( b8f56bf )
Vince Larson at
Add sam bv calc (#1141)
( abddfa2 )
noreply at

#508 (Oct 24, 2024, 3:11:08 AM)

Updates to jenkins scripts.
( 75fd926 )
Gunther Huebler at
Updating script usage in plot tests.
( ec720a8 )
Gunther Huebler at

#507 (Oct 23, 2024, 3:11:09 AM)

remove Lscale, Lscale_up and Lscale_down from stat_fields_reader and restart_clubb call and remove recalculation of Lscale Ticket #1166 (#1197)
( 91fc973 )
noreply at
Adding multi_col cases to run_bindiff.py and adding new multicol BFBness test.
( 4cc54e5 )
Gunther Huebler at
Renaming some jenkins tests and making them use a new directory
( 63d63ba )
Gunther Huebler at
Changing test name to indicate that it runs on GPUs.
( f2ae5b7 )
Gunther Huebler at

#506 (Oct 20, 2024, 3:11:08 AM)

QuadTune: Use SVD to approximate the sensitivity matrix, `normlzdSensMatrixPoly`, and curvature matrix, `normlzdCurvMatrix`.
( 7726602 )
Vince Larson at

#505 (Oct 19, 2024, 3:11:09 AM)

Fix time height plots (#1196)
( c6a3895 )
noreply at
QuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text.
( 25435a8 )
Vince Larson at
QuadTune: De-bias matrix before calculating parameter correlations, add comments about definition of residual, include metric name in hover text.
( f8d7cc4 )
Vince Larson at

#504 (Oct 18, 2024, 3:11:10 AM)

QuadTune: Revise PCA biplot and clarify how variables are masked.
( 3229e98 )
Vince Larson at
add run_bindiff_w_flags.py script. #1181 pull request #1194
( a6aa9ae )
noreply at

#503 (Oct 17, 2024, 3:11:06 AM)

Multicol CLUBB (#1193)
( ebbe866 )
noreply at

#502 (Oct 16, 2024, 3:11:07 AM)

Added rcm-background to pyplotgen animations (#1195)
( 063ae17 )
noreply at

#501 (Oct 15, 2024, 3:11:08 AM)

QuadTune: Allow QuadTune to simultaneously tune for multiple 20x20 fields, e.g., SWCF, LWCF, and PRECT.
( 8576566 )
Vince Larson at

#500 (Oct 11, 2024, 3:11:07 AM)

Added min_max_smth_mag as a Fortran parameter to constants_clubb.F90 (#1192)
( fc73061 )
noreply at

#499 (Oct 9, 2024, 3:11:08 AM)

QuadTune: Create SVD plot, start to add checks on global means (unfinished), and start to add capability to include multiple fields (SWCF, LWCF, etc.) in metrics (unfinished).
( 89d63ed )
Vince Larson at
add Lscale intent(out) to advance_clubb_core and advance_clubb_core_api (#1190)
( 91a850e )
noreply at
Bindiff script (#1191)
( 47d9dbe )
noreply at

#498 (Oct 8, 2024, 3:11:09 AM)

Mono Flux Optimizations (#1189)
( 7ece9fa )
noreply at

#497 (Oct 5, 2024, 3:11:07 AM)

refactoring to remove compiler warnings (#1187)
( d423046 )
noreply at
Added requirements.txt for running the sens_matrix_dashboard.
( 5cc5bc9 )
hasenau2 at
QuadTune: Introduce new utility function to create scatterplots and plot first 2 SVD components.
( f518cd9 )
Vince Larson at
I am copying the round-off level changes made to grid weights
( 771412d )
bmg2 at

#496 (Oct 4, 2024, 3:11:08 AM)

Ri zm calc cleanup (#1186)
( af5ff60 )
noreply at
Monoflux test (#1188)
( 15cdcef )
noreply at
Fixing bug. This loop has a vertical dependency prevent the use of collapse(2). See https://github.com/larson-group/cam/issues/175\#issuecomment-2261283301
( 411597c )
Gunther Huebler at
Small bug fix
( 4bd3342 )
Gunther Huebler at

#495 (Oct 3, 2024, 3:11:08 AM)

New/new_hybrid PDF Stats Removal (#1185)
( fe6ddb2 )
noreply at
Copyout Nuke (#1182)
( 9be92f7 )
noreply at

#494 (Sep 28, 2024, 3:11:09 AM)

QuadTune: Print leverage values and make other minor refactorings.
( 17f710e )
Vince Larson at

#493 (Sep 27, 2024, 3:11:09 AM)

Remove radf variable from CLUBB call
( 208542b )
noreply at
Initializing total_mismatches to zero.
( 1632cf1 )
Gunther Huebler at

#492 (Sep 26, 2024, 3:11:10 AM)

Removing the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack.
( 8bbf5db )
Gunther Huebler at

#491 (Sep 25, 2024, 3:11:05 AM)

QuadTune: Add check of global-mean SWCF OBS, plus clean up unneeded comments.
( 7e8fb96 )
Vince Larson at
reduce compiler warnings (#1180)
( bf54ede )
noreply at

#490 (Sep 21, 2024, 3:11:06 AM)

QuadTune: Add check of global-mean SWCF.
( 85b1742 )
Vince Larson at
refactor code to remove compiler warnings for exceeding 100 characters per line and unused variables and parameters (#1179)
( 9b72d6d )
noreply at

#489 (Sep 20, 2024, 3:11:09 AM)

Removing duplicate definition of edsclr when CLUBB_CAM is defined.
( 221a4ef )
Gunther Huebler at
Ri zm calc6 (#1177)
( acfdc3c )
noreply at

#488 (Sep 18, 2024, 3:11:07 AM)

change loop index to sclr and edsclr for sclr_dim and edsclr_dim (#1173)
( 4f7294c )
noreply at
Ri zm calc5 (#1175)
( 0a57508 )
noreply at

#487 (Sep 15, 2024, 3:11:06 AM)

QuadTune: Add column parameter vector and equals sign to sens matrix equation plot.
( 9e1cc76 )
Vince Larson at

#486 (Sep 14, 2024, 3:11:07 AM)

Updating tuner code to include an option to save all netcdf files (#1171)
( 91b4c34 )
noreply at
Update documentation for QuadTune.
( cdae675 )
noreply at

#485 (Sep 12, 2024, 3:11:09 AM)

Change variables from a1 and a3 to a1_coef and a3_coef
( bbe60eb )
Vince Larson at

#484 (Sep 11, 2024, 3:11:05 AM)

Update README so that it mentions run_bindiff_all.py
( e27a7e6 )
noreply at

#483 (Sep 6, 2024, 3:11:06 AM)

Well, this will probably anger the Grim Reaper, but I have finally
( 93d4edb )
bmg2 at

#482 (Sep 3, 2024, 3:11:09 AM)

QuadTune: Use quadratic programming to calculate the smallest dparam needed to debias 2 regions.
( 5c3a77e )
Vince Larson at
Ri zm calc4 (#1168)
( 3b21ab4 )
noreply at

#481 (Aug 30, 2024, 3:11:08 AM)

Ri_zm calc (Part 4) - Implementing calc_Ri_zm (#1160)
( 7e33d71 )
noreply at

#480 (Aug 28, 2024, 3:11:08 AM)

Updates pyplotgen's readme
( dc75b08 )
noreply at
change opencv requirement to use headless and update Pillow minor
( f3020b6 )
0-freundlich-adenin at

#479 (Aug 27, 2024, 3:11:09 AM)

QuadTune: Plots subsets of 20x20-degree regions.
( 69a9b60 )
Vince Larson at
Small bugs fix in bugsrad code. This was only caught when compiling with intel debug and using '-warn all', which compares interface dimensions/declaration between files.
( 2fa2850 )
Gunther Huebler at
Variable name correction in acc data statement.
( 43bba04 )
Gunther Huebler at
Splitting zeros_vector into versions with nzt or nzm size to match sizes in subroutine.
( 6a2d0b8 )
Gunther Huebler at
Making radf size correct in api and clubb_driver.
( 1a8be6d )
Gunther Huebler at

#478 (Aug 25, 2024, 3:11:07 AM)

Updated for ghostless version of CLUBB.
( 57e0224 )
bmg2 at

#477 (Aug 24, 2024, 3:11:07 AM)

Raw-copy updating src/Morrison_microphys
( 737a455 )
Cole Pickett at

#476 (Aug 23, 2024, 3:11:06 AM)

Clubb ghost exorcism (#1159)
( fa3e595 )
noreply at
Updated the README to explain the grid notations gr%nzm and gr%nzt,
( ae5433c )
bmg2 at

#475 (Aug 22, 2024, 3:11:07 AM)

Slight variable name change in attempt to get the Update Master Output step to run.
( 396b3ec )
Gunther Huebler at

#474 (Aug 16, 2024, 3:11:09 AM)

Nightly clubb plots (#1167)
( 3d5089d )
noreply at

#473 (Aug 9, 2024, 3:11:09 AM)

Added zt2zm2zt-smoothing to remove noise in MPACE_B winds (#1161)
( a5e586c )
noreply at
Moving PosInf to clubb_model_settings.F90
( 1f96b03 )
Gunther Huebler at
Changing openacc to openmp migration repo to a fork with a change to switch the order of copyins and copies. This is to allow us to only copyin the pdf_params structure, but copy the internal arrays. When the copying of the internal arrays happens first, followed by the copyin of the structure, we overwrite the pointers to the internal arrays on the GPU version of the structure. Hence why we want the copyins to precede the copy statements.
( 46fe460 )
Gunther Huebler at

#472 (Aug 5, 2024, 3:11:09 AM)

Updating input fields so that the zt2zm function is used for
( 47c5a7c )
bmg2 at

#471 (Aug 1, 2024, 3:11:09 AM)

Fixing GPU bug. There is a vertical dependency with wpxp. This is what was breaking the ECT test, see larson-group/cam#175
( 7e50946 )
Gunther Huebler at
Fixing bugs that are only caught when not outputting w_[up/down]_in_cloud stats or if l_host_applies_sfc_fluxes=.true. The l_host_applies_sfc_fluxes=.true. isn't testable (at least not in clubb_standalone), and I just caught that visually. The cloudy_updraft_frac and cloudy_downdraft_frac fields not being set were only noticable in cam, because we always run with iw_up_in_cloud>0 and iw_down_in_cloud>0 to output stats.
( e7c07d8 )
Gunther Huebler at
Moving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test.
( 3f86592 )
Gunther Huebler at

#470 (Jul 23, 2024, 3:11:09 AM)

When l_vert_avg_closure is enabled, the flags l_call_pdf_closure_twice,
( 88e63b7 )
bmg2 at

#469 (Jul 20, 2024, 3:11:08 AM)

Making a change to the l_C2_cloud_frac option with advance_xp2_xpyp.
( 8f11156 )
bmg2 at
Fixing bug. qclvar copying is handled by the api, but we were deleting it with an unstructured data statement. I added this due as a fix before thinking qclvar was a local variable, which happened because I mixed up the CLUBB_CAM and CLUBBND_CAM flags. https://github.com/larson-group/cam/issues/175
( a67d637 )
Gunther Huebler at

#468 (Jul 19, 2024, 3:11:08 AM)

Updates README so that I can note that BIT_CHANGING:9ca167aa8b04cbebe4a1177a72f13731454e1e11
( b539e93 )
noreply at
Committing a change that will initialize this set of variables
( f298699 )
bmg2 at

#467 (Jul 18, 2024, 3:11:09 AM)

There were furhter issues found with the k_lh_start code.
( 1cb8872 )
bmg2 at
Ri_zm calc (Part 3) - Moving calculations for Ri_zm out of diagnose_Lscale_from_taus (#1157)
( acdd31a )
noreply at
In my previous commit, I changed the domain of the maxloc commands
( 370b85f )
bmg2 at
This commit brings the stats output from the all cases run with
( 876a5a7 )
bmg2 at

#466 (Jul 17, 2024, 3:11:09 AM)

Setting the value of K_hm to 0 at the non-interactive upper and lower
( babbea9 )
bmg2 at
I am committing changes to stats output for cloud_cover, rcm_in_layer,
( c908398 )
bmg2 at

#465 (Jul 16, 2024, 3:11:09 AM)

QuadTune: Adds arrow plot and plot of bias vs. a diagnostic field such as U10.
( 360ded1 )
Vince Larson at
I am making this commit because, as part of deghosting, I discovered 2
( 253c4a6 )
bmg2 at
I am updating the snowslope output stat so it matches bit-for-bit
( 933df43 )
bmg2 at

#464 (Jul 14, 2024, 3:11:08 AM)

I am updating the SILHS code that calculates k_lh_start to work
( 7dab4b4 )
bmg2 at

#463 (Jul 13, 2024, 3:11:09 AM)

This technically BIT_CHANGING commit is being made to keep results in
( 524390e )
bmg2 at

#462 (Jul 12, 2024, 3:11:09 AM)

Making jenkins bit diff tests only run on carson. This is because these tests are defined by a file we store on carson that needs to be updated after each test.
( 165b2ca )
Gunther Huebler at
Replacing pgi references with nvhpc, and adding nvhpc_debug config script along with new jenkins tests.
( 840a651 )
Gunther Huebler at
Removing flag meant for gpu debugging.
( e579a89 )
Gunther Huebler at
This code in adj_low_res_nu was using the ghost point when
( ef65d27 )
bmg2 at

#461 (Jul 11, 2024, 3:11:10 AM)

Spack updates (#1158)
( 05c2978 )
noreply at
Making our mkl compile config work directly in the compile script rather than relying on a correspondence with the config files. Also settig main config scripts to use new ifx compiler.
( 77e9eb3 )
Gunther Huebler at
Removing allocatable status of some variables. These need not be declared allocatable and ifx seems to have a problem with it. The allocatable status is an artifact from when we had these as arrays of initially unknown size.
( 98f09c1 )
Gunther Huebler at
Fixing the run agent to be carson, since it has the only GPU capable of running with openmp gpu offloading.
( de4b158 )
Gunther Huebler at

#460 (Jul 3, 2024, 3:11:09 AM)

Ri_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156)
( e3a10e0 )
noreply at
Testing the new module system with our GPU diffness test. See https://github.com/larson-group/sys_admin/issues/829
( 40d3013 )
Gunther Huebler at
The module system is setup via paths in /etc/profile.d/larson-group.sh, so we need to source it. https://github.com/larson-group/sys_admin/issues/829
( a166adc )
Gunther Huebler at
Fixing bug in jenkinsfiles.
( bff2607 )
Gunther Huebler at

#459 (Jul 2, 2024, 3:11:10 AM)

QuadTune: Feeds in 20degree_CAM_TAUS_202404 runs.
( 5341e11 )
Vince Larson at
QuadTune: Feeds in 20degree_CAM_TAUS_2020404, take 2.
( c26a54d )
Vince Larson at

#458 (Jun 28, 2024, 3:11:10 AM)

Updated the turbulent sedimentation code to account for ghost point
( 7edd25b )
bmg2 at

#457 (Jun 26, 2024, 3:11:08 AM)

This commit fixes 2 issues in regards to hydrometeor sedimentation:
( 56ddf19 )
bmg2 at

#456 (Jun 21, 2024, 3:11:10 AM)

Adds blank line so that I can note BIT_CHANGING:5df5fcb3d6c51d6af2e8017d270336eefa75ad3e
( ea1f30a )
noreply at
QuadTune: Adds more flags to toggle plots.
( 02b1373 )
Vince Larson at

#455 (Jun 20, 2024, 3:11:06 AM)

Ri zm calc (Part 1) - Combine and move call to calc_brunt_vaisala_freq_sqd (#1154)
( 5df5fcb )
noreply at
Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145 (#1155)
( 7ec7a22 )
noreply at

#454 (Jun 19, 2024, 3:11:07 AM)

QuadTune: Uses flags to shut off calculations for unwanted plots.
( a33330f )
Vince Larson at
Making CPU vs GPU jenkins test compare openmp code also.
( e6be1b2 )
Gunther Huebler at
This allows the conversion script to be called anywhere.
( c1a22d2 )
Gunther Huebler at
Fixing bug in jenkinsfiles.
( 6a881c8 )
Gunther Huebler at

#453 (Jun 18, 2024, 3:11:08 AM)

QuadTune: Clarifies some plot titles.
( 622b5c3 )
Vince Larson at

#452 (Jun 16, 2024, 3:11:05 AM)

QuadTune: Customizes metrics shown in parameter adjustment bar chart.
( 0870179 )
Vince Larson at

#451 (Jun 11, 2024, 12:34:15 PM)

QuadTune: Customizes inputs to threeDotFig.
( 8ab44c1 )
Vince Larson at

#450 (Jun 9, 2024, 3:11:05 AM)

I fixed a bug where the array declarations for X_mixt_comp_all_levs,
( 41a547a )
bmg2 at

#449 (Jun 8, 2024, 3:11:06 AM)

QuadTune: Removes LWCF and PRECT from 2-point dpMin plot.
( 5b57780 )
Vince Larson at

#448 (Jun 5, 2024, 3:11:06 AM)

Making the only change required to make clubb run with openacc in cam.
( 73d60f6 )
Gunther Huebler at

#447 (Jun 4, 2024, 3:11:07 AM)

QuadTune: Moves plotting code to new fnc, createFigs.
( 4a157a4 )
Vince Larson at
Making the f in f90 capital for consistency.
( e9cf9a8 )
Gunther Huebler at
Surrounding print statement with debug flag check.
( ed26ee9 )
Gunther Huebler at
Making multicol diffness script rely on the largest difference detected, rather the the sum/total of differences. This is essentially to relax the cpu vs gpu diffness test because mpace_b is noisey and often causes the test to fail for innocent bit changing commits. Looking at the largest difference does have the advantage of the check being less sensitive to case differences, such as number of timesteps, vertical levels, number of columns, etc.
( a67e221 )
Gunther Huebler at

#446 (May 30, 2024, 3:11:10 AM)

The variable rc_coef_zm needed to be passed in and saved from
( a3a589a )
bmg2 at

#445 (May 29, 2024, 3:11:06 AM)

QuadTune: Brings in CAM regional files.
( 678e448 )
Vince Larson at

#444 (May 17, 2024, 3:12:08 AM)

Fixing a bug. Does not change default results.
( a29122b )
bmg2 at

#443 (May 16, 2024, 3:12:09 AM)

Fixing small GPU bug in advance_xm, also fixing a bug with sclrpthvp that's only detectable when were running 1 column on GPUs.
( 4fa1344 )
Gunther Huebler at

#442 (May 14, 2024, 3:12:07 AM)

gr%zm should be used here instead of gr%zt, since these are
( f935993 )
bmg2 at
Thermodynamic-level (zt) values should be used with zt-variable
( bf951bc )
bmg2 at

#441 (May 4, 2024, 3:12:08 AM)

Jupyter Notebooks for proving formulas (#1151)
( ec0c1d8 )
noreply at
Adding extra exclamation to acc statement to comment it out.
( 0ab983f )
Gunther Huebler at

#440 (May 3, 2024, 3:12:09 AM)

Making compatible with latest clubb changes.
( ada5704 )
Gunther Huebler at
I am committing code that effectively ignores the values of certain
( 6146f6b )
bmg2 at
I am moving the advance_xm_wpxp setting of xm(1) = xm(2) from the
( 3b3339a )
bmg2 at

#439 (May 2, 2024, 3:12:06 AM)

Making num_draw_points in fill_holes a constant. We were already using this value as a constant everywhere, but passing a constant by argument list makes it difficult/impossible for a compiler to optimize using that constant, unless it does inlining. Now, rather than passing the constant num_hf_draw_points (or sometimes a hardcoded 2) we just use num_hf_draw_points directly from constants_clubb. This massively improves the performance of a loop in fill holes when using nvhpc+omp, which was the motivation for this, but should also improve the performance on CPUs. Everything is BFB.
( 3abb325 )
Gunther Huebler at
Raw-copy updating src/Morrison_microphys
( 2090eb2 )
Cole Pickett at

#438 (May 1, 2024, 3:12:07 AM)

Moved the ghost-point setting of xm(1) = xm(2) to the last line
( b2af0ad )
bmg2 at
Optional arguments are just best sometimes (#1150)
( 556370c )
noreply at
Fixing bug. RESOLVED:556370c6406e6b943b88affbe7728a5036b1ba22, this was catchable by using debugging flags, but seems to otherwise cause no issues. Investigating I found that it only clips the below ground level, so that must not have been affecting other levels. This is technically BIT_CHANGING since it resolves an issue.
( e904e3f )
Gunther Huebler at

#437 (Apr 30, 2024, 3:12:08 AM)

Adding space to include BIT_CHANGING:84588a46852a812266d19e36a8220f71ad56043a. This (https://github.com/larson-group/clubb/commit/84588a46852a812266d19e36a8220f71ad56043a) is described as not bit changing, but that seems to depend on the compiler version and some flags. The bin diff tests detected differences in only twp_ice when using e3sm flags on nelson, and both e3sm flags and default flags on carson.
( 7b429b2 )
Gunther Huebler at

#436 (Apr 27, 2024, 3:12:08 AM)

I'm changing the way ddzt handles the derivative over momentum level 1.
( 9136bf0 )
bmg2 at

#435 (Apr 20, 2024, 3:11:09 AM)

Changing the linear interpolation in the zt2zm function at momentum
( 3d364fe )
bmg2 at

#434 (Apr 19, 2024, 3:11:05 AM)

Committing some thresholding around positive-definite fields after
( 84588a4 )
bmg2 at

#433 (Apr 14, 2024, 3:11:09 AM)

I am committing a stats change to the ghost point values of zt
( 573dc60 )
bmg2 at

#432 (Apr 13, 2024, 3:11:05 AM)

Adding -noacc to nvhpc openmp config script, sometimes nvhpc compiles acc code automatically, and this shuts it off.
( a9512e5 )
Gunther Huebler at

#431 (Apr 12, 2024, 3:11:06 AM)

I am committing a bug fix to the code that calculates mixed Brunt
( 7877201 )
bmg2 at

#430 (Apr 11, 2024, 3:11:08 AM)

While it doesn't affect results, I fixed what appears to be an
( 2bcf4d8 )
bmg2 at
I am updating the loop in subroutine diagnose_xpwp so that it doesn't
( be09281 )
bmg2 at
This commit is being made to keep the stats zt output from the
( 77b2d91 )
bmg2 at

#429 (Apr 8, 2024, 3:11:07 AM)

Making change to add RESOLVED:a492228d3adfed56f8777d12176fcd7d165260f6, which was technically bit changing because it undid changes to the config flags AND was tested relative to the previous commit (which introduced the flag changes) because that one was labelled as bit changing.
( 259ad39 )
Gunther Huebler at

#428 (Apr 7, 2024, 3:11:09 AM)

It was discovered that the location where the ghost point values
( 5e8d77d )
bmg2 at
I accidentally committed a couple things in the previous commit
( a492228 )
bmg2 at
Pushing loop into calc_ref_z_linear_thvm to prevent erroneous inlining optimizations by nvfortran. This is BFB on nvhpc 24.3 with -O0 and BFB on nvhpc 22.5 with -O2. https://github.com/larson-group/clubb/issues/1148
( eb12d64 )
Gunther Huebler at
Making commit to test jenkins.
( 3d47f2c )
Gunther Huebler at

#427 (Apr 6, 2024, 3:11:08 AM)

The code that advances um and vm when l_predict_upwp_vpwp is turned off
( 56254ef )
bmg2 at

#426 (Apr 5, 2024, 3:11:10 AM)

At the ghost point below the surface, which does not matter in
( 45b34a9 )
bmg2 at

#425 (Apr 2, 2024, 3:11:09 AM)

Fixing bug with C6 parameters, see https://github.com/larson-group/clubb/pull/1147. This is technically BIT_CHANGING, but only when C6thl != C6thlb and l_diag_Lscale_from_tau=.false.
( 6a1e889 )
Gunther Huebler at
Adding space to make commit because last commit RESOLVED:35d228ebbb66b1463f30659321cd4f7d76adffa2
( 76e4ab2 )
Gunther Huebler at
Fixing a bug. These directives get added when running the ACC to OMP conversion script. I'm unsure how I accidentally commited this, and equally unsure of how only one file is affected. This was found while debugging the clubb thread test
( f4eddbe )
Gunther Huebler at

#424 (Apr 1, 2024, 3:11:10 AM)

Putting ngrdcol in clubb_params (#1147)
( 35d228e )
noreply at

#422 (Mar 25, 2024, 3:11:08 AM)

Adding sum part to comment
( 650cd4c )
Gunther Huebler at

#421 (Mar 23, 2024, 3:11:07 AM)

Adding comment to explain unusual code choice.
( db81035 )
Gunther Huebler at

#420 (Mar 19, 2024, 3:11:07 AM)

OpenMP Optimizations (#1146)
( 6909e9a )
noreply at

#419 (Mar 13, 2024, 3:11:06 AM)

Adding new compile script for frontier+cray
( 30fc720 )
Gunther Huebler at

#418 (Mar 6, 2024, 3:11:08 AM)

Removes comment about Numerical Recipes
( fc6fd8c )
noreply at

#417 (Feb 16, 2024, 3:11:09 AM)

Small acc tweaks (#1144)
( 90f3976 )
noreply at

#416 (Feb 15, 2024, 3:11:09 AM)

Add blank line in order to trigger Jenkins tests for CAM
( b7ae0f1 )
noreply at
Fixing restarts by changing wm to wm_zt, the stats output name was changed in 4b25d3a
( 8eb9783 )
Gunther Huebler at

#415 (Feb 14, 2024, 3:11:09 AM)

fixing bug, name of wm_zt was left as "wm"
( 4b25d3a )
Vince Larson at
README change to add BIT_CHANGING:595e2c13024c1e913815d56ae724823a82bddc03 when using l_diag_Lscale_from_tau=.false. and for the CAM repo we have BIT_CHANGING:d275ac17f3e53d65641c3210df33ce0fad4e5aef as the hash
( a1965f1 )
Gunther Huebler at

#414 (Feb 9, 2024, 3:11:07 AM)

adding equals sign cuz I've had it up to here with this typo!
( f33de58 )
benjamin.andrew.stephens at

#413 (Feb 8, 2024, 3:11:10 AM)

Fixing a bug where the Lscale used in calculating the damping
( 595e2c1 )
bmg2 at

#412 (Feb 2, 2024, 3:11:09 AM)

These should've been single quotes. I didn't tested a files with single quotes, then for some reason did all the changes as double quotes and only retested with gfortran. RESOLVED:9b495acd26a0b009ec84845aa289c36befff0c41
( 5ef956d )
Gunther Huebler at
Some files have tabs in them, this broke my previous sed commands in various spots.
( b5ee314 )
Gunther Huebler at
Adding -no-declare-mapper to the openmp conversion script. This adds a sort of data mapper for derived types, but we just copy those in explicitly so they are unneccesary. They also cause problems for the cray compiler.
( 5d5c3fc )
Gunther Huebler at
Some more places we need changes.
( 34f6783 )
Gunther Huebler at
Hopefully the final sneaky error
( 0959fd1 )
Gunther Huebler at

#411 (Feb 1, 2024, 3:11:10 AM)

Removing backslashes. These should be slashes, but gnu,intel,nvidia generate code that treats slashes as whitespace and backslashes as a character, while cray treats backslashes as whitespace as well. This is easily fixed by using quotes, and in the meantime we will change the backslashes to forward slashes. See https://github.com/larson-group/clubb/issues/1138\#issuecomment-1910844013
( 9b495ac )
Gunther Huebler at
Adding ifdefs around multicol netcdf outputting.
( c3e2f32 )
Gunther Huebler at

#410 (Jan 31, 2024, 3:11:09 AM)

This is (amazingly) BIT_CHANGING. The differences are due to some compiler optimizations, see https://github.com/larson-group/clubb/pull/1133\#issuecomment-1865156979.
( 2e41ead )
Gunther Huebler at
Removing git log print before logging to file. On some systems/configs the command would cause a busy wait until the person running hit q, and it is superfluous since we are already saving the git log to a file.
( 05f2b8b )
Gunther Huebler at

#409 (Jan 24, 2024, 3:11:08 AM)

Now that the value of wp3 is being set to a boundary value of 0
( 8237a01 )
bmg2 at

#408 (Jan 23, 2024, 3:11:09 AM)

Adds comments to openmp conversion script
( 821ee17 )
noreply at

#407 (Jan 21, 2024, 3:11:17 AM)

Adding clubb specific compiler flag -DCLUBB_GPU, intended for use with openmp or openacc running on the GPU. Also adding a compiler flags, -DCUDA, and case statment for generating random numbers in silhs.
( 529afce )
Gunther Huebler at
Adding new compiler flags to nvfortran GPU compile script
( ab99eb0 )
Gunther Huebler at
Adding openacc to openmp conversion script, and making some new compiler config files.
( 199660f )
Gunther Huebler at

#406 (Jan 19, 2024, 3:11:17 AM)

Fixing bug. See https://github.com/larson-group/clubb/issues/1139
( be2fe61 )
Gunther Huebler at
Fixing tridiag solver bug. See https://github.com/larson-group/clubb/issues/1139
( cad1c8b )
Gunther Huebler at
Slight rework to acc data statements. This allows us to use return calls in advance_clubb_core again. See https://github.com/larson-group/clubb/issues/1139
( f289753 )
Gunther Huebler at
Fixing small GPU stats bug
( ec65c38 )
Gunther Huebler at
Changing xm to out in mono flux solver. There is no need for it to be inout, and it confused me for a bit so I'm fixing it.
( 23fa778 )
Gunther Huebler at

#405 (Jan 12, 2024, 3:11:07 AM)

I am altering the mean advection code in preparation for ghost point
( 18afbb9 )
bmg2 at

#404 (Jan 11, 2024, 3:11:09 AM)

BIT_CHANGING:1ce764cad4ea41e739b6ce9d95d8bec7db72097f
( 753138f )
bmg2 at
Making nightly cpu vs gpu test use a new config script for the cpu compile. This is the minimize the differences to be only whether or not the openacc GPU code is enabled.
( a993b7b )
Gunther Huebler at
Limiting mpace_b to 250 timestpes for gpu vs cpu test. The mpace_b test passed on my home GPU (RTX 3080), but not when run in jenkens on nelson (P4000). So either the tolerance is too strict, or we're running too many timesteps for mpace_b. Currently the largest difference on mpace_b multicol check is 3.31551e-05 on jenkins, so if this fails also I'll up the tolerance for mpace_b instead of further reducing timesteps run.
( f427753 )
Gunther Huebler at

#403 (Jan 10, 2024, 3:11:06 AM)

Setting l_smooth_Heaviside_tau_wpxp to .true. by default
( 1ce764c )
Gunther Huebler at
Undoing accidental changes to compiler config
( dd59f60 )
Gunther Huebler at

#402 (Jan 9, 2024, 3:11:10 AM)

Initial creation of gpu vs cpu output comparison jenkins test
( 121575b )
Gunther Huebler at
Adding clean step before compiling GPU to new jenkins test
( f41f798 )
Gunther Huebler at
Making script check the specific multicore files
( 1d7763e )
Gunther Huebler at
Adding more cases to test
( ad40e1c )
Gunther Huebler at
Adding new argument list variables to openacc copyin statements
( 79d08b6 )
Gunther Huebler at
Limiting gabls2 to 500 timesteps in new jenkins test
( 2b18aa5 )
Gunther Huebler at
Changing sclr test case to cobra, keeping 500 timestpes, gabls2 appears less stable as a result of commit 77ce77409e9da770515f66bbb50a869da74aca7d
( 0a5c95a )
Gunther Huebler at

#401 (Jan 5, 2024, 3:11:09 AM)

Removing awkward nan check in favor of a default for Ncnp2_on_Ncnm2
( a727ecf )
Gunther Huebler at

#400 (Jan 4, 2024, 3:11:07 AM)

Threadpublic (#1133)
( ddbb50b )
noreply at

#399 (Dec 22, 2023, 3:11:06 AM)

With wp3 now being set to a fixed-point boundary condition value
( d0a28ef )
bmg2 at

#398 (Dec 19, 2023, 3:11:09 AM)

QuadTune: updates setup in order to read in 30x30
( 7a0ec8d )
Vince Larson at
Updating the code to set the bottom of the thermodynamic level grid for
( 7b2313f )
Brian Griffin at
Commit to enforce a fixed-point boundary condition of wp3=0 at
( 77ce774 )
Brian Griffin at

#397 (Dec 13, 2023, 3:11:08 AM)

Added new Brunt-Väisälä frequency plots to pyplotgen's VariableGroupTaus
( d4e0631 )
Vince Larson at
Adds commas to fix bug
( f76ff05 )
noreply at

#396 (Dec 9, 2023, 3:11:07 AM)

Adding boundary conditions for the wp3_term_ta_ADG1_lhs subroutine.
( 6a1ad52 )
Brian Griffin at
For single loop vectors, removing the "collapse(2)" from the acc statements.
( ed4235d )
Brian Griffin at

#395 (Nov 29, 2023, 3:11:10 AM)

Re-adjusted cap for invrs_tau_wpxp in src/CLUBB_core/mixing_length.F90
( 0ea7656 )
Steffen Domke at

#394 (Nov 22, 2023, 3:11:09 AM)

Added new utility script print_tunable_parameters_table.py (#1130)
( 4dcbd3c )
noreply at

#393 (Nov 17, 2023, 3:11:09 AM)

Added non-trapezoidal zm interpolation for cloud_frac (#1127)
( c107cfd )
noreply at

#392 (Nov 15, 2023, 3:11:10 AM)

Changing order of sqrt and **3 to improve stability, see clubb#1126. Since this is a change to the order of operations, it is BIT_CHANGING.
( 8bb6311 )
Gunther Huebler at
Setting the minimum tolerance to be epsilon, this is BIT_CHANGING but only for single precision. See larson-group/clubb#1126
( 527360d )
Gunther Huebler at
BIT_CHANGING! Updated taus code calculations - CLUBB ticket #1115 (#1125)
( 5406350 )
noreply at

#391 (Nov 14, 2023, 3:11:10 AM)

stats_metadata needs to be threadprivate to make our standalone thread test work.
( f4dabf6 )
Gunther Huebler at

#390 (Nov 11, 2023, 3:11:09 AM)

Quick fix for AnimationPanel so it works with the background-rcm changes (#1123)
( 37ef1bb )
noreply at
New Stats Indices Type (#1118)
( 3dc7571 )
noreply at

#389 (Nov 10, 2023, 3:11:08 AM)

Z displace tunable (#1122)
( 63825a3 )
noreply at

#388 (Nov 9, 2023, 3:11:10 AM)

Updated CLUBB so that adj_low_res_nu (which can be called on its own
( d8f2de7 )
bmg2 at
Removing begin_height and end_height as outputs from setup_grid. They
( 84ce1af )
bmg2 at

#387 (Nov 1, 2023, 3:11:08 AM)

Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)
( 1236463 )
noreply at
BIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120)
( 05a4556 )
noreply at

#386 (Oct 29, 2023, 3:11:06 AM)

QuadTune: Updates setup to reproduce results from sens0707 sample 34.
( c4b477c )
Vince Larson at

#385 (Oct 28, 2023, 3:11:06 AM)

QuadTune: Adds marker for residual bias on metrics bar chart.
( 1baa5ee )
Vince Larson at

#384 (Oct 27, 2023, 3:11:07 AM)

QuadTune: Imposes lower bound of 0 on tuned parameter values.
( 025ae22 )
Vince Larson at

#383 (Oct 26, 2023, 3:11:09 AM)

Making run_bindiff_all.py an executable.
( a303b16 )
Gunther Huebler at

#382 (Oct 25, 2023, 3:11:08 AM)

Finally removing scratch variables. (#1116)
( aaad88e )
noreply at

#381 (Oct 20, 2023, 3:11:08 AM)

Remove svn id tag in order to trigger nightly tests.
( 8ac8b4b )
noreply at
Removed 3rd svn id tag in order to trigger nightly tests
( d2c14c9 )
noreply at

#380 (Oct 18, 2023, 3:11:08 AM)

Removes blank line in order to trigger nightly tests.
( 2358af6 )
noreply at
Deletes svn id tag, will trigger host-model nightly tests.
( 15c23aa )
noreply at

#379 (Oct 13, 2023, 3:11:08 AM)

Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)
( f7a5473 )
noreply at

#378 (Oct 11, 2023, 3:11:05 AM)

Major overhaul of run_bindiff_all.py
( 6de84c3 )
noreply at

#377 (Oct 3, 2023, 3:11:09 AM)

QuadTune: Adds new parameter correlation matrix plot.
( 59786b0 )
Vince Larson at

#376 (Sep 26, 2023, 3:11:08 AM)

QuadTune: Adds fnc to plot a horizonal bar chart for metrics.
( cb5a053 )
Vince Larson at
QuadTune: Includes full perturbation in params bar chart
( a4f7432 )
Vince Larson at

#375 (Sep 23, 2023, 3:11:09 AM)

Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)
( 6654de2 )
noreply at
BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)
( 405d449 )
noreply at

#374 (Sep 20, 2023, 3:11:10 AM)

QuadTune: adds commented-out attempt to vary the bar base
( 5ed8fb8 )
Vince Larson at
Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)
( 1a81400 )
noreply at

#373 (Sep 15, 2023, 3:11:08 AM)

QuadTune: Adds chisqd metric and bar chart for a global run.
( fb63ca4 )
Vince Larson at

#372 (Sep 14, 2023, 3:11:09 AM)

In the previous commits for the --background-rcm option of pyplotgen,
( f974d07 )
bmg2 at
I am updating the --background-rcm option of pyplotgen to make two
( 1510c34 )
bmg2 at
BIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)
( e29d9d7 )
noreply at

#371 (Sep 13, 2023, 3:11:07 AM)

I added the --background-rcm optional flag to pyplotgen.
( 09e01df )
bmg2 at
Small additions that allow all cases to run with pyplotgen.
( cbbd5fc )
bmg2 at
Needed to remove a print statement.
( 693a178 )
bmg2 at

#370 (Sep 12, 2023, 3:11:09 AM)

Updating pyplotgen to include a "contour" plot of rcm in the background.
( 616669c )
bmg2 at

#369 (Sep 8, 2023, 3:11:08 AM)

Added option to plot "Lumped Buoyance Budgets" (wpxp_bp combined with
( 3538881 )
bmg2 at
Added a statement that I had previously omitted. The new combined budget
( db8ea91 )
bmg2 at

#368 (Sep 6, 2023, 3:11:09 AM)

Fixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106)
( c1f62c5 )
noreply at
BIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102
( 346643e )
noreply at

#367 (Sep 2, 2023, 3:11:07 AM)

QuadTune: refactored to use more subroutines
( bb786cc )
Vince Larson at

#366 (Aug 29, 2023, 3:11:06 AM)

Adds basic cost function printouts to QuadTune.
( a1bc713 )
Vince Larson at

#365 (Aug 23, 2023, 3:12:07 AM)

Fixes bug in QuadTune's code that prescribes parameter values.
( 8f7ec02 )
Vince Larson at

#364 (Aug 19, 2023, 3:12:09 AM)

Hides print statements in RegTune by using beVerbose=False.
( ad7158d )
Vince Larson at

#363 (Aug 18, 2023, 3:12:05 AM)

For RegTune, adds capability to prescribe (not tune) a parameter
( 9d35ffa )
Vince Larson at

#362 (Aug 17, 2023, 3:12:06 AM)

For RegTune, adds color-coded matrix of correlations among parameter vectors.
( edccdfb )
Vince Larson at
For clarity, renames figures in RegTune.
( 31f76a7 )
Vince Larson at
Creates new function, setUpPreliminaries, in RegTune.
( 3ac0cb6 )
Vince Larson at

#361 (Aug 9, 2023, 3:11:10 AM)

For RegTune, adds quadratic curves to three-dot plot.
( 9324242 )
Vince Larson at
For RegTune, defaults to polynomial fit for sensitivity matrix
( 9ada744 )
Vince Larson at
In RegTune, normalizes metrics by a user-specified number
( b0101dc )
Vince Larson at

#360 (Aug 2, 2023, 3:11:08 AM)

Adding wp_coef and wp_coef_zt to acc data statements.
( 3dbe0a4 )
Gunther Huebler at
For RegTune, update input netcdf files.
( 4739fb5 )
Vince Larson at
Bv efold bit changing (#1095)
( 0c7fc1f )
noreply at

#359 (Jul 26, 2023, 3:11:09 AM)

Bit changing changes (#1104)
( e420780 )
noreply at

#358 (Jul 21, 2023, 3:11:08 AM)

Adds to RegTune a plot of a color-coded normalized sensitivity matrix
( 1ab8885 )
Vince Larson at
Adds hint about installing dash for RegTune
( e1a7259 )
noreply at
Updates input files for RegTune.
( 722630f )
Vince Larson at

#357 (Jul 19, 2023, 3:11:10 AM)

Added code to subroutine run_clubb in src/clubb_driver.F90 which prints git log and git diff information to the <case>_setup.txt output file. (#1101)
( 29ad556 )
noreply at
Openacc tweaks and cleanup 2 (#1099)
( 1f4d045 )
noreply at

#356 (Jul 16, 2023, 3:11:07 AM)

Loop to `nz-1` instead of `nz` because upper boundary condition
( 13de9b8 )
noreply at

#355 (Jul 14, 2023, 3:11:09 AM)

Update requirements.txt
( 0b9f422 )
noreply at
Update requirements.txt
( 4c8e71a )
cernikt at

#354 (Jul 12, 2023, 3:11:06 AM)

Improving run_bin_diff.py to accept an argument to print the differences, and an argument to define a threshold to ignore differences.
( 398b8a7 )
Gunther Huebler at

#353 (Jul 11, 2023, 3:11:10 AM)

Openacc tweaks and cleanup (#1097)
( f9b2927 )
noreply at

#352 (Jul 7, 2023, 3:11:10 AM)

Modifying README. Last commit was BIT_CHANGING:0b0ab3d530bef06eb90bf6dde21b26eb25780214 see https://github.com/larson-group/clubb/pull/1091 for details.
( 2e3ed83 )
Gunther Huebler at

#351 (Jul 6, 2023, 3:11:08 AM)

Changing "Fnc" to "fnc" for consistency and easy search.
( 0e9723d )
benjamin.andrew.stephens at
Memory usage optimizations (#1091)
( 0b0ab3d )
noreply at

#350 (Jun 28, 2023, 3:11:06 AM)

CLUBB ticket #1069: (#1092)
( a323ae3 )
noreply at

#348 (Jun 21, 2023, 3:11:10 AM)

Data movement improvement (#1089)
( 711714c )
noreply at

#347 (Jun 14, 2023, 3:11:09 AM)

Moving data statements to outter most parts of clubb and little fix in advance_wp2_wp3 (#1088)
( d778246 )
noreply at

#346 (Jun 9, 2023, 3:11:09 AM)

advance_xp2_xpyp with explicitly managed memory (#1086)
( 2723c75 )
noreply at
advance_windm_edsclrm with explicitly managed memory (#1087)
( 78bdcca )
noreply at

#345 (Jun 7, 2023, 3:11:10 AM)

advance_wp2_wp3 with explicitly managed memory (#1085)
( b6da36c )
noreply at

#344 (Jun 2, 2023, 3:11:11 AM)

GPUizing most of advance_clubb_core (#1084)
( d1bd3cd )
noreply at

#343 (May 31, 2023, 3:11:08 AM)

GPUizing Lscale_width_vert_avg. Loops have been restructured for simplicity, and algorithm has a different starting value to avoid k dependency. Results are BFB. (#1083)
( 982203d )
noreply at

#342 (May 21, 2023, 3:11:09 AM)

Added comments to the script to explain ambiguous portions of my code
( b75bf29 )
cernikt at

#341 (May 20, 2023, 3:11:09 AM)

I added dycoms2_rf01 to the list of cases that could be run.
( df63abf )
bmg2 at
I updated the run_cnvg_test_multi_cases_revall.csh script to include
( 2b12091 )
bmg2 at
Modified run_cnvg_test_multi_cases_default.csh and
( ecc4f9d )
bmg2 at

#340 (May 17, 2023, 3:11:08 AM)

I updated the README to finish the section on the convergence tests.
( 6b32140 )
bmg2 at
Edited the README section on CLUBB convergence tests.
( 594b74f )
bmg2 at

#339 (May 16, 2023, 3:11:11 AM)

Editing convergence scripts to show that the directory should be placed in
( 8ee870e )
bmg2 at
Committing scripts for use in running CLUBB convergence tests in the background.
( 5159c74 )
bmg2 at
Updated the background run scripts for the convergence tests with a comment
( ea3a68f )
bmg2 at

#338 (May 14, 2023, 3:11:07 AM)

making changes to trigger autoudpate for test, these commits do nothing
( 7304a4e )
cernikt at
Here is another commit that changes nothing
( c072656 )
cernikt at
change to trigger updates
( 1c51108 )
cernikt at
change to calc pressure to trigger autoupdate
( 6d00bf5 )
cernikt at

#337 (May 10, 2023, 3:11:07 AM)

I am beginning a section on running the convergence tests in the README.
( 8d36383 )
bmg2 at
Update run_cnvg_test_multi_cases_revall.csh
( 4218a86 )
noreply at
Update run_cnvg_test_multi_cases_default.csh
( 6eff64f )
noreply at
Update run_cnvg_test_multi_cases_baseline.csh
( 949fb9d )
noreply at
Update README
( 1efa8cd )
noreply at

#336 (May 7, 2023, 3:11:10 AM)

Removed Space From clip_explicit
( af6f9d8 )
cernikt at
updated autocommit_message_maker to check another error for debugging
( cdffbc1 )
cernikt at
Fixed the autocommit message maker code, should noot error anymore
( 569bd73 )
cernikt at

#335 (May 4, 2023, 3:11:09 AM)

Reducing C_wp2_splat to 0.25 (from 2.0) for new implicit splatting code.
( 03f5805 )
benjamin.andrew.stephens at

#334 (May 3, 2023, 3:11:08 AM)

Calc sfc varnce GPUization (#1081)
( 9c47857 )
noreply at

#333 (May 2, 2023, 3:11:09 AM)

Making CLUBB's splatting scheme implicit and smoother (#1075)
( f0d1d1c )
noreply at

#332 (May 1, 2023, 3:11:09 AM)

Updates to make the convergence tests run on Anvil.
( 898a66b )
bmg2 at
adding an update that changes nothing and is just a test for the autoupdate script
( 6242bef )
cernikt at

#331 (Apr 24, 2023, 3:11:10 AM)

changing tunable_parameters
( 56b351a )
cernikt at
changing tunable_parameters
( ec5eb04 )
cernikt at
changing tunable_parameters
( 3d6022f )
cernikt at
This commit is a commit that changes absolutely nothing. It is meant to trigger a change in the git update scripts, so that I can start the commit message logging in the autocommit updates larson-group/sys_admin#797
( e66210a )
cernikt at
Fixing an error with the autocommit_update script that was causing it new works
( 5af7321 )
cernikt at
this is another commit that cahnges nothing that will trigger the gitUpdate scripts
( b89e736 )
cernikt at

#330 (Apr 22, 2023, 3:11:08 AM)

GPUizing Various Small Routines (#1080)
( 4205f95 )
noreply at

#329 (Apr 21, 2023, 3:11:06 AM)

Added a new file to compile CLUBB on Anvil.
( 7eb659d )
bmg2 at

#328 (Apr 20, 2023, 3:11:07 AM)

Lscale GPUization (#1079)
( a883cf5 )
noreply at
gfortran does not like intent(out) specifiers for functions.
( e7911cd )
Gunther Huebler at

#327 (Apr 18, 2023, 3:11:08 AM)

update the scripts for convergence test
( 4f762ff )
bmg2 at

#326 (Apr 7, 2023, 3:11:09 AM)

bug fixes for the autocommit message maker code
( 6d1ddfc )
cernikt at
Making it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. This is what broke the clubb_openmp_gfortran_test.
( 0eca214 )
Gunther Huebler at

#325 (Apr 6, 2023, 2:06:47 PM)

This commit contains code changes to implement modifications on limiters in three places:
( 4b16d83 )
bmg2 at
Advance xm wpxp gpuization (#1077)
( 49ec599 )
noreply at
Small improvements to diff_netcdf_outputs.py, removing reliance on ncdiff, now it is entirely in python. Cleaning up linux_x86_64_nvhpc_gpu.bash, removing outdated parts, improving default parallel compilation, changing pgfortran to nvfortran.
( f20b355 )
Gunther Huebler at
Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.
( c0fb204 )
Gunther Huebler at
Fixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.
( 3432999 )
Gunther Huebler at

#321 (Mar 31, 2023, 3:11:07 AM)

Code changes to implement modificiations on wp3 clippings
( 475d569 )
bmg2 at

#320 (Mar 30, 2023, 3:11:09 AM)

Adds blank line to trigger nightly tests
( 5cd77e0 )
noreply at

#319 (Mar 25, 2023, 3:11:07 AM)

Small GPU fixes (#1076)
( d6db663 )
noreply at

#318 (Mar 23, 2023, 3:11:08 AM)

Adding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.
( dffad1d )
Gunther Huebler at

#317 (Mar 19, 2023, 3:11:06 AM)

Undoing README update, 1 space = 1 byte and we should maximize file sizes to deter hackers from stealing our data. Also BIT_CHANGING:fb4556e4cc4cb3d4b6df3520370a28a824f357ef for configs where l_use_cloud_cover = .false., which means I was wrong about this ever not being bit changing, so I must've either only tested with l_use_cloud_cover = .true. or only tested the multicol diffs when I put compute_cloud_cover inside the if statement.
( 0cf0157 )
Gunther Huebler at

#316 (Mar 17, 2023, 3:11:07 AM)

Moving compute_cloud_cover outside of if ( l_use_cloud_cover ) then statement, the cloud_cover and rcm_in_layer variables they compute aren't output in clubb_standalone, but are in cam, causing cam bit diff tests to break.
( fb4556e )
Gunther Huebler at

#315 (Mar 16, 2023, 3:11:09 AM)

Update README
( b6496ce )
noreply at

#314 (Mar 15, 2023, 3:11:08 AM)

Pdf closure driver gpuization (#1071)
( 5cbf4f8 )
noreply at

#313 (Mar 14, 2023, 3:11:08 AM)

Making 'a_const' into a CLUBB tunable parameter. (#1072)
( 903169a )
noreply at
Update README
( 14c03cc )
noreply at
Update README
( 2c597f4 )
noreply at

#312 (Mar 10, 2023, 3:11:06 AM)

Fixed an old notation change in the README
( 9512061 )
noreply at
Update README
( 5cb6f1b )
noreply at

#311 (Mar 9, 2023, 3:11:07 AM)

Update README
( db8d593 )
noreply at
Gpu updates (#1070)
( a3bcb0b )
noreply at
Code changes to implement modified boundary condition
( 8e473e0 )
bmg2 at
Implements Thomas Toniazzo's bug fix for spike removal
( c5c2960 )
noreply at

#310 (Mar 7, 2023, 3:11:10 AM)

Add scripts to configure and run convergence test
( 0e087be )
bmg2 at
reorgnize the scripts for convergence test simulations
( 53c717b )
bmg2 at

#309 (Mar 4, 2023, 3:11:08 AM)

added autocommit message maker to clubb so I have an easier time testing it
( 965964e )
cernikt at
changes to integrate message maker into gitUpdate scripts
( 6e42047 )
cernikt at
Oops, I made 1 small error, should be consistent now.
( be6ab48 )
cernikt at
Implementing changes to the initial conditions.
( 9aeea14 )
bmg2 at
This commit most definitely does not change any bits,
( a668299 )
bmg2 at

#308 (Mar 1, 2023, 3:11:09 AM)

Clubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068)
( 981b9ba )
noreply at

#307 (Feb 28, 2023, 3:11:06 AM)

Fixing bug. This was only triggered when l_input_fields=.true., which I am only testing because it needs to be true so that I can test ADG2_driver.
( d3264a2 )
37674341+huebleruwm at
Removing usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly.
( fa914b7 )
37674341+huebleruwm at

#306 (Feb 23, 2023, 3:11:06 AM)

Update VariableGroupNondimMoments.py
( f41e9c4 )
noreply at

#305 (Feb 18, 2023, 3:11:08 AM)

Adding wp3_on_wp2_cfl_num to CLUBB's output stats.
( f4a832b )
bmg2 at
Added wp3_on_wp2_cfl_num to the VariableGroupNondimMoments.py file for
( 28e0fce )
bmg2 at

#304 (Feb 12, 2023, 3:11:09 AM)

made graphing for netcdf_var collector general. #1040
( b361c61 )
cernikt at

#303 (Feb 9, 2023, 3:11:08 AM)

Porting pdf_closure subroutine with OpenACC (#1059)
( 47cd566 )
noreply at

#302 (Feb 8, 2023, 3:11:07 AM)

GPUizing some helping procedures.
( c9a950d )
37674341+huebleruwm at
Removing sigma_sqd_w from the acc data copyout statement. This is a bug which was causing the code to crash when not using managed memory.
( 7d6dfad )
37674341+huebleruwm at

#301 (Feb 5, 2023, 3:11:11 AM)

Removing update_pressure from public list. This was causing compilation crashes. RESOLVED:8c7230fecb877d04fb129ef5e143e0993b4b29b1
( 2f84d7c )
Gunther Huebler at
Fixing bug, arrays given a dummy index in 0fafc6b0b1f1a6058d37bf3db4bb3708204504db are declared nsize, but are only used up to nlevels, thus we need the (1,1:nlevels) specifier when passing them. This issue was only caught by our _debug tests, so that's good evidence the new flags we added to initialize unused to memory was effective.
( 5850944 )
Gunther Huebler at

#300 (Feb 3, 2023, 3:11:09 AM)

Pushing column loop into calculate_thvm
( 0fafc6b )
37674341+huebleruwm at
Removing update_pressure since it is no longer called anywhere in clubb or host models. The addition of this subroutine was discussed in larson-group/e3sm#6 and the removal of the call to it was discussed in larson-group/clubb#926.
( 8c7230f )
37674341+huebleruwm at

#299 (Feb 1, 2023, 3:11:11 AM)

Added option (-i) to run_tuner.bash script to enable pre-tuning standalone runs. README will be updated.
( cfd87ac )
Vince Larson at

#298 (Jan 31, 2023, 3:11:07 AM)

Adds to dashboard a bar plot that separates nonlinear
( 1025d80 )
Vince Larson at

#297 (Jan 27, 2023, 3:11:09 AM)

Adds to dashboard plots error bars for
( 822ec13 )
Vince Larson at

#296 (Jan 26, 2023, 3:11:10 AM)

GPUizing sat_mixrat_ice_2D.
( 15a351e )
37674341+huebleruwm at

#295 (Jan 25, 2023, 3:11:10 AM)

Adding OpenACC data directives for mixing length and adg routines
( 9521770 )
Vince Larson at
Fixing error causing GPU code not to run. Some variables to be copied were labelled as (ngrdcol,nz) when it should be (:ngrdcol,:nz). I've just removed the data length specifiers completely since they are not neccesary in general.
( a0f5313 )
Gunther Huebler at

#294 (Jan 21, 2023, 3:11:08 AM)

Adds to tuner error bars on bias removal (arrow) plots
( f9eb64f )
Vince Larson at

#293 (Jan 20, 2023, 3:11:09 AM)

Breaking up column loop in mono_flux_limiter. This may not be the final form for GPUization, but it's definitely a start, no longer do we have to copy single column variables to multicolumn ones anywhere. (#1051)
( e21e271 )
noreply at
Adding tridiag_lu solver (#1056)
( dda5e8c )
noreply at

#292 (Jan 19, 2023, 3:11:08 AM)

Restructuring and Porting of Compute_mixing_length subroutine(Phase 2) (#1054)
( 7f1decd )
noreply at

#291 (Jan 13, 2023, 3:11:10 AM)

Restructuring and Porting of Compute_mixing_length subroutine(Phase 1) (#1052)
( 88b8239 )
noreply at

#290 (Jan 12, 2023, 3:11:09 AM)

Pushing column loop into lapack wrap.
( 6d5d5f5 )
37674341+huebleruwm at

#289 (Jan 4, 2023, 3:11:06 AM)

Adds to tuner code for min dp for stubborn parameters
( 2f93030 )
Vince Larson at
Adding config script to compile with openacc using nvhpc.
( ef9acf8 )
Gunther Huebler at

#288 (Dec 23, 2022, 3:11:06 AM)

added ntecdf var collector and readme to clubb repo
( d956707 )
cernikt at

#287 (Dec 15, 2022, 3:11:06 AM)

I updated and augmented the instructions to run the tuner.
( c2bce73 )
noreply at

#286 (Dec 13, 2022, 3:11:10 AM)

For the dashboard, creates a forward model solution function.
( 94ffde0 )
Vince Larson at

#285 (Dec 10, 2022, 3:11:09 AM)

For tuning dashboard, modify the separate input file
( ab88165 )
Vince Larson at
Delete tuner file that was accidentally committed
( fa8048b )
Vince Larson at
Prevent accidental commits of python .pyc files
( 31fd72c )
Vince Larson at
I can now safely remove all the "ifdef E3SM" statements from CLUBB's
( caa222a )
bmg2 at

#284 (Dec 8, 2022, 3:11:06 AM)

ADG1_pdf_driver subroutine port with OpenACC
( dd076c1 )
37674341+huebleruwm at
Replacing old elemental ADG1_w_closure with new GPUized one. Making G_unit tests work with new version. Also making mixt_frac_max_mag a scalar since it was only being used as such. larson-group/clubb#1049
( b6d7e4f )
37674341+huebleruwm at
Making the multicolumn code open the netcdf file before writing and close when finished writing. This fixes a bug where the netcdf data wasn't being written.
( 803a30a )
Gunther Huebler at

#283 (Nov 29, 2022, 3:11:07 AM)

Creates separate file for inputting data to the tuner
( 2165286 )
Vince Larson at
I added "smooth" max clipping for invrs_tau_shear, which is a variable
( c50ab36 )
bmg2 at

#282 (Nov 25, 2022, 3:11:07 AM)

Replacing $ with & in namelist definition to make consistent.
( 61b4a67 )
Gunther Huebler at

#281 (Nov 24, 2022, 3:11:08 AM)

Adding capability to change matrix solving method via clubb_config_flags.
( 1a43597 )
37674341+huebleruwm at
Fixing small bug, need to pass _copy arrays to prevent lapack mangling the real ones.
( a8f324c )
37674341+huebleruwm at
Making GPU and CPU versions of the penta_lu solver the same as discussed in larson-group/clubb#1024.
( 3ebfa3d )
37674341+huebleruwm at
Delete clubb.in
( 2bd6ee6 )
37674341+huebleruwm at
Delete error_diffs.txt
( cc464d8 )
37674341+huebleruwm at
Adding capability to change matrix solving method via clubb_config_flags.
( 33dd904 )
37674341+huebleruwm at
Removing unwanted files.
( 873ae27 )
37674341+huebleruwm at

#280 (Nov 23, 2022, 3:11:05 AM)

Steffens tuner fixer branch (#1041)
( 7c694ec )
noreply at

#279 (Nov 22, 2022, 3:11:08 AM)

A different way of dealing with monotonic flux limiter spikes (#1046)
( 81e8853 )
noreply at

#278 (Nov 17, 2022, 3:11:07 AM)

Making interface for matrix solvers.
( eaa6bc7 )
37674341+huebleruwm at
Making tridag tridiag everywhere, making sol soln, and adding intent comments.
( 3db17eb )
37674341+huebleruwm at

#277 (Nov 9, 2022, 3:11:07 AM)

Minor adjustment to eliminate spikes in thlm tendencies from the monotonic flux limiter. (#1043)
( f2b6fe4 )
noreply at

#276 (Nov 2, 2022, 3:11:09 AM)

Making clubb_driver only call the multicolumn driver if num_standalone_columns > 1
( 1715dbb )
37674341+huebleruwm at

#274 (Oct 19, 2022, 3:11:06 AM)

Adding space because commit ba3b1ef5ceaa07706f078cc61cfdac22d3c6a1c3 in the sys_admin repo fixed a bug causing tests to fail, this means we have RESOLVED:d8df4eea1e41bee8cbd3de374148241f040fc03c, which was only labelled as failing since we erroneously checked the commit range it was included in.
( 712c7fc )
Gunther Huebler at

#273 (Oct 15, 2022, 3:11:09 AM)

Creating new flags to control monotonic flux limiter (#1039)
( 5b79c73 )
noreply at
I am adding cloudy_updraft_frac and cloudy_downdraft_frac as
( 7550b3e )
bmg2 at
I forgot to add cld_updr_frac and cld_downdr_frac to all_stats.in
( dd43df7 )
bmg2 at

#272 (Oct 14, 2022, 3:11:06 AM)

Updating monotonic flux limiter code to remove spikes. (#1038)
( 1bf74dd )
noreply at

#271 (Oct 10, 2022, 11:17:21 AM)

Namelists need to be closed with a '/', and omitting it will break many tests.
( 946dda9 )
Gunther Huebler at
Making save variables in the multicol code threadprivate, this fixes the openmp test. Also changing the way we name and save the multicol output, this allows the parallel run to run with multiple columns. I've reflected the changes in comments where relevant. larson-group/clubb#1033
( 73e61e5 )
Gunther Huebler at
Adds commented-out line that prevents the monotonic flux
( ee00186 )
noreply at

#270 (Oct 6, 2022, 3:11:08 AM)

Making multicolumn version of advance_clubb_core in clubb_driver that accepts a number of columns to run clubb with. All bit-for-bit output on standalone cases, so the first column is correct.
( b00b88f )
37674341+huebleruwm at
Improvements. Netcdf output is now functional and we can detect errors with multiple columns even when the standard output is identical.
( 52d5b77 )
37674341+huebleruwm at
Now the multicolumn netcdf output is correct. Adding comments too. larson-group/clubb#1033
( 8a6e980 )
37674341+huebleruwm at
Made the multicolumn inout arrays save from timestep to timestep. This makes the extra columns more independent from the main column and allows differences in the extra columns to propagate more. larson-group/clubb#1033
( 83b151b )
37674341+huebleruwm at
Adding some fields to tweak for extra columns. This might be sufficient, the netcdf data for the column is similar but visually different, and I tested with up to 64 columns and there wasn't any crashes. larson-group/clubb#1033
( 421981e )
37674341+huebleruwm at
Adding script to compare netcdf outputs. This will print the max absolute diff and max percent diff for each field. This is made specifically for the multicolumn netcdf output. The script is not done, but this is the basics of it. larson-group/clubb#1033
( fd99b2b )
37674341+huebleruwm at
Casting 0.0 to correct precision that format_date wants.
( 970c224 )
37674341+huebleruwm at
Updating script to compare netcdf output. larson-group/clubb#1033
( c25baf3 )
37674341+huebleruwm at
Updating column num input in config flags. larson-group/clubb#1033
( af14d54 )
37674341+huebleruwm at
Adding small check to allow configurable_multi_column_nl to be optional. If configurable_multi_column_nl is omitted from configurable_model_flags, then we assume we only want 1 column and a warning is printed. larson-group/clubb#1033
( f2cfc4f )
37674341+huebleruwm at
Small script update
( f848105 )
37674341+huebleruwm at
Adding comments to script.
( e4980f9 )
37674341+huebleruwm at
Adding comments, setting to num_standalone_columns=1 by default, and preventing multicolumn output when l_stats=false. larson-group/clubb#1033
( 72afa58 )
37674341+huebleruwm at

#269 (Sep 27, 2022, 3:11:10 AM)

Adds near-coastal regions to the tuner.
( 0e54f9c )
Vince Larson at

#268 (Sep 24, 2022, 3:11:10 AM)

In tuner, creates box and whiskers version of plot
( 30ed028 )
Vince Larson at

#267 (Sep 17, 2022, 3:11:08 AM)

Adding a kludgy but functional trimming for the (non-CLUBB) variables that are
( c3ee79e )
benjamin.andrew.stephens at

#266 (Sep 13, 2022, 3:11:06 AM)

Adding line to indicate BIT_CHANGING:055f83d512354e6330233a5eecd5cff0456c0292 to fix nightly tests. The commit which introduced calc_ice_cloud_frac_component was not BFB using -O2 optimization. See pull request https://github.com/larson-group/clubb/pull/1034 for detail.
( 7b46672 )
Gunther Huebler at

#265 (Sep 10, 2022, 3:11:06 AM)

Adding initial subroutine calc_ice_cloud_frac_component.
( 055f83d )
37674341+huebleruwm at
Cleaning up new subroutine calc_liquid_cloud_frac_component, and making sat_mixrat_ice a subroutine that works the same way as sat_mixrat_liq. larson-group/clubb#972
( 346bb61 )
37674341+huebleruwm at
Comment update
( 07ffac2 )
37674341+huebleruwm at
Removing these paratheses is BIT_CHANGING since it modifies the order of operations, but allows for the multiplication and subraction to be done in parallel for complex pipelines.
( 300b819 )
37674341+huebleruwm at

#264 (Sep 8, 2022, 3:11:10 AM)

Removing elementalness from sat_vapor_press_liq and making interal procedures subroutines rather than functions to prevent unneccesary data copies. Doing the same for thlm2T_in_K since it is often used in conjunction with sat_vapor_press_liq. Bit-for-bit confirmed with O0 using all single column cases with or without l_diag_Lscale_from_tau, and with cam_coarse_res. larson-group/clubb#972
( 150cfa3 )
37674341+huebleruwm at
Adding comments.
( a897c50 )
37674341+huebleruwm at

#263 (Sep 2, 2022, 3:11:11 AM)

Making compatible with latest clubb change.
( 83787f1 )
Gunther Huebler at
rewrote run_bindiff_all.bash into python, and added extra functionality to view output of diff_netcdf_outputs.py script that is run inside of it. #980
( aa4978a )
cernikt at

#262 (Sep 1, 2022, 3:11:07 AM)

Raw-copy updating src/Morrison_microphys
( ae80c8b )
LarsonGroupSysAdmin at

#261 (Aug 31, 2022, 3:11:09 AM)

Refactored fill_holes_vertical to make GPUization simple. This is BIT_CHANGING, but results are bit-for-bit when using -O0 optimization, thus it is not answer changing. The first pass over each grid column will not parallelize well, the k-loop needs to be done in serial. Maximum parallelization has been exposed for the global hole-filling though, at the cost of occasionally doing unneccesary calculations. larson-group/clubb#972.
( 2fac6f7 )
37674341+huebleruwm at
Removing fill_holes_multiplicative and replacing magic numbers with parameters from constants_clubb. larson-group/clubb#972
( 9e2c466 )
37674341+huebleruwm at
Moving vertical_avg and vertical_integral to advance_helper_module. larson-group/clubb#972
( 25cc883 )
37674341+huebleruwm at

#260 (Aug 26, 2022, 3:11:08 AM)

updating timestep_convergence_test.py to python 3 #693
( d4055d1 )
cernikt at

#259 (Aug 25, 2022, 3:11:10 AM)

Update README.md
( f331fbc )
noreply at

#258 (Aug 18, 2022, 8:18:59 AM)

I have optimized the new w_up_in_cloud and w_down_in_cloud code by
( 8ce3e98 )
bmg2 at

#256 (Aug 17, 2022, 3:11:10 AM)

I added w_down_in_cloud to the "Ws" variable group in pyplotgen.
( 908a6ae )
bmg2 at
I altered the w_up_in_cloud and w_down_in_cloud code so that a
( 06545f8 )
bmg2 at

#255 (Aug 16, 2022, 3:11:07 AM)

I changed the w_up_in_cloud code in 2 ways:
( 9f7dce7 )
bmg2 at
I added stats output for w_down_in_cloud to all_stats.in.
( 6df666c )
bmg2 at

#254 (Aug 2, 2022, 3:11:09 AM)

I discovered a bug when trying to run with all_stats today. Apparently,
( bac96d2 )
bmg2 at

#253 (Jul 29, 2022, 3:11:07 AM)

Updates tuner with new simulations from Zhun.
( e771724 )
Vince Larson at

#252 (Jul 27, 2022, 3:11:06 AM)

Adding line to trigger nightly tests.
( 06d27be )
noreply at

#251 (Jul 26, 2022, 3:11:09 AM)

Removing line to trigger nightly tests.
( 275bd81 )
noreply at

#250 (Jul 22, 2022, 3:11:07 AM)

Adding line to trigger nightly tests.
( 22bf0c7 )
noreply at

#249 (Jul 21, 2022, 3:11:09 AM)

Update README
( 8c34bad )
noreply at
Adds to tuner dashboard a plot of predicted and actual removal of regional biases.
( c5fed92 )
Vince Larson at

#248 (Jul 20, 2022, 3:11:06 AM)

Fixing a bug in mono_flux_limiter.F90. (#1026)
( 142a49c )
noreply at
Fixing a bug.
( 2b4e2de )
bmg2 at

#247 (Jul 16, 2022, 3:11:08 AM)

Updates info on tuner.
( d3c238e )
noreply at

#246 (Jul 14, 2022, 3:11:07 AM)

Added some comments. Changing some variable names might be nicer, loss might make more sense than energy, n1 and n2 are meaningless, etc.
( 7c0255e )
Gunther Huebler at

#245 (Jul 13, 2022, 3:11:10 AM)

Update README
( 7df3134 )
noreply at
Changed intent out to inout to fix grid deallocation error during cleanup.
( 33052a4 )
Steffen Domke at
Added a3_coef_min_minmax entry to namelist init_minmax for ALL the tuner input files to prevent error with gfortran compiler (min > max)
( 7190846 )
Steffen Domke at

#244 (Jul 7, 2022, 3:11:07 AM)

Adds to the tuning dashboard a quadratic optimizer.
( 16d052a )
Vince Larson at

#243 (Jun 24, 2022, 3:11:07 AM)

renamed clubb_ifort_build to clubb_ifort_debug_run and updated jenkinsfile to reflect
( 561be75 )
cernikt at
forgot to change if statements in jenkinsfile
( 55dd6ef )
cernikt at
created debug case for gfortran as well as updating jenkins files to work with it, as well as a forgotten change to the ifort debug test jenkinsfile
( ba22685 )
cernikt at

#242 (Jun 23, 2022, 3:11:10 AM)

modified clubb_ifort_configuration file to support nan trapping for uninitialized variables
( cef5c81 )
cernikt at

#241 (Jun 22, 2022, 3:11:07 AM)

Fixing units in stats_zt_module.F90
( 3124702 )
noreply at
Adding config file for nvhpc on casper.
( de436ee )
Gunther Huebler at

#240 (Jun 21, 2022, 3:11:05 AM)

Just a line to read me, because commit a19386022f26aa17da805381904bcde4c59cb521 fixed the bit diff tests after a previous commit broke it, RESOLVED:991ebceb8caba2ad56c1125871b7de1de3c04dba.
( 382a4b9 )
Gunther Huebler at

#239 (Jun 20, 2022, 3:11:09 AM)

Missed file in previous commit.
( a193860 )
Gunther Huebler at

#238 (Jun 18, 2022, 3:11:08 AM)

Making linear_interpolated_azt_2D and linear_interpolated_azm_2D subroutines just to avoid a needless data copy.
( 31584c4 )
37674341+huebleruwm at
Making update_xp2_mc 2D and creating interface for 1D calls.
( 991ebce )
37674341+huebleruwm at

#237 (Jun 16, 2022, 3:11:08 AM)

Pushing loop into fill_holes.
( 7e3ade5 )
37674341+huebleruwm at
Forgot small change.
( 37e333b )
37674341+huebleruwm at
Making compatible with latest clubb change.
( a939f12 )
Gunther Huebler at

#236 (Jun 14, 2022, 3:11:07 AM)

Hardcoding 1 into uses of gr arrays where single column versions of gr is used.
( fa81b26 )
Gunther Huebler at

#235 (Jun 12, 2022, 3:11:10 AM)

Changing a few spots that use gr%weights that should have been included in commit 2f3542cea1a4dea1b242dd61947087b6458548fb
( d31feb5 )
Gunther Huebler at

#234 (Jun 11, 2022, 3:11:09 AM)

Adds to tuning dashboard an arrow plot of biases.
( 535090d )
Vince Larson at
Removing the zt2zm interface from clubb_api and making the api calls just redirect to the grid class interface for it.
( 6653f87 )
37674341+huebleruwm at
Pushing column loop into mean advection procedures.
( e7ce964 )
37674341+huebleruwm at
Little loop push
( 974b54a )
37674341+huebleruwm at
Moving above/below index of grid weights to last dimension.
( 2f3542c )
37674341+huebleruwm at
Missed file meant for commit e7ce96456e691ac84abf467670642a8ec90f4bb9.
( 8f3f453 )
Gunther Huebler at

#233 (Jun 10, 2022, 3:11:08 AM)

updated check budgets balance test to be compatible with branch test for testing python 3 version
( 76698cc )
cernikt at
updating check budgets script on main branch
( d6f7316 )
cernikt at
last minute addition
( 04bc789 )
cernikt at
The big grid change. Converting gr from being an array of types containing 1D arrays, to a type containing 2D arrays. All cases BFB, cam multicolumn+silhs BFB, and cam multicolumn (no silhs) with backwards compatible settings BFB.
( 4ea154d )
37674341+huebleruwm at

#232 (Jun 9, 2022, 3:11:08 AM)

Updating Mac config to work with newer Mac processor.
( 619c177 )
pbroels at

#231 (Jun 8, 2022, 3:11:07 AM)

Lots of small loop pushes
( 56f6445 )
37674341+huebleruwm at
Small bug fix. This was not a bit changing bug, but could cause crashes if we compile with floating point trapping in a multicolumn run.
( 16978e7 )
37674341+huebleruwm at
Small refactoring to mfl_xm_lhs, just removing need to pass in gr.
( 543ba94 )
37674341+huebleruwm at
Final loop pushes needed before the grid change.
( 265227c )
37674341+huebleruwm at
Replacing use of gr with nz
( 34ebd9e )
37674341+huebleruwm at
Chaning hardcoded 1 to i, where i is set to 1. Just a lil nicer.
( 8b68d8a )
37674341+huebleruwm at

#230 (Jun 3, 2022, 3:11:08 AM)

Making lmin a scalar again, twas a mistake to make it an array, it can only take on one value.
( 2230f5a )
Gunther Huebler at
Making nu_vert_res_dep a type containing arrays, as opposed to being an array of types.
( 50a3080 )
Gunther Huebler at

#229 (Jun 2, 2022, 3:11:07 AM)

Changed clubb_bin_diff_regression_gfortran_test_new to clubb_bin_diff_regression_gfortran_test and clubb_bin_diff_regression_gfortran_test to clubb_bin_diff_regression_gfortran_test_old to reflect current usage.
( d3e945d )
pbroels at
This commit is not bit changing
( 291e87d )
noreply at
This commt is not bit changing
( 0ff480f )
noreply at
The G_unit tests never allocated pdf_implicit_coefs_terms. It's unclear to me how these were working before, but it seems that something about making these 2D allocatable arrays exposed the bug.
( aa26820 )
Gunther Huebler at
Making zt2zm calls with pdf_implicit_coefs_terms use the 2D version.
( b736467 )
Gunther Huebler at
Removing setup_grid and setup_parameters functionality from setup_clubb_core. This is beacuse in host models the required grid information may not be known during the setup process, resulting in dummy arguments for setup_clubb_core and the grid and paramters being setup during runtime anyway. Now, in the host models we can call these subroutines immediately after setup_clubb_core to maintain identical functionality (sam, wrf), and in others we can wait to call these until the main timestepping procedure (cam,e3sm).
( 8b9b43e )
Gunther Huebler at
Making 2D versions of setup_grid and setup_parameters.
( ed85915 )
Gunther Huebler at

#228 (Jun 1, 2022, 3:11:07 AM)

Almost final loop pushes (#1012)
( e8deb21 )
noreply at
Making compatible with latest clubb change.
( 7a9a332 )
Gunther Huebler at
Making pdf_implicit_coefs_terms a type containing 2D arrays. (#1014)
( 1e537ba )
noreply at

#227 (May 28, 2022, 3:11:11 AM)

Constructing rcm within SILHS (as rcm_pdf) (#1011)
( e4f125b )
noreply at

#226 (May 26, 2022, 3:11:07 AM)

Correcting name of old "shear" case to "neutral" in pyplotgen config file. Also adding benchmark file path.
( fe8bcaf )
benjamin.andrew.stephens at
Adding changes to work on new Mac Mini. larson-group/sys_admin#775
( f2e53a3 )
pbroels at
Missed a place where I needed to rename shear case to neutral.
( b12b374 )
noreply at

#225 (May 20, 2022, 3:11:09 AM)

Changed priorities on pyplotgen variables. In a priority run, by default only the variables in VariableGroupBase.py will be plotted. This explicitly does not include variables in VariableGroupBaseBudgets, which would have to be included explicitly when desired.
( ab7e662 )
Vince Larson at
Adding some description that should have been entered a very long
( 22a1c3e )
bmg2 at

#224 (May 18, 2022, 3:11:11 AM)

Update sens_matrix_dashboard.py
( 28c9f98 )
Vince Larson at
Add shear/neutral case (#1005)
( 4e6f0ac )
noreply at

#223 (May 17, 2022, 3:11:09 AM)

Add to tuning dashboard some plots of biases vs. sensitivity.
( 7181829 )
Vince Larson at

#222 (May 14, 2022, 3:11:09 AM)

Added ability to apply smooth min max functions in mixing_length.F90
( ca240e9 )
68997723+JanGrn at
Updated deprecated documentation of smooth min and max functions in advance_helper_module.F90. https://github.com/larson-group/clubb/issues/965
( 6efeb9d )
68997723+JanGrn at
Checked whether results really are identical even with round-off when we have l_smooth_min_max=T and smooth_min_max_mag=zero. Next commit rolls some of these changes back for merge into master. https://github.com/larson-group/clubb/issues/965
( 25b7981 )
68997723+JanGrn at
Added test cases to smooth_min_max_tests.F90 and updated documentation.
( 0ac0518 )
68997723+JanGrn at
Added final test cases to smooth_min_max_tests.F90
( 8d94590 )
68997723+JanGrn at

#221 (May 12, 2022, 3:11:08 AM)

Adding comments to explain confusing or complicated portions of the Jenkinsfiles.
( b518f7f )
pbroels at

#220 (May 6, 2022, 3:11:11 AM)

Renamed smth_range to heaviside_smth_range
( 9f4f3e3 )
68997723+JanGrn at
Added tot_vartn_normlzd statistics. Renamed sclr in advance_helper_module to scalar to be more consistent with clubb naming schemes.
( 092e54d )
68997723+JanGrn at
Implemented three further normalized variation stats. Included a (most likely temporary) check because in a few cases, denominator for normalization would be 0.
( b80c7ff )
68997723+JanGrn at
Fixed typo in pyplotgen and fixed display of plotted time (previously displayed on the wrong line).
( fde70b3 )
68997723+JanGrn at
Dealt with issue https://github.com/larson-group/clubb/issues/985
( 748152e )
68997723+JanGrn at
Changed priorities of total normalized variation stats, included error handling in total normalized variation stats.
( 8ab8776 )
68997723+JanGrn at
Removed duplicate VariableGroupNormalizedVariations.py
( f0dff4b )
68997723+JanGrn at
Renamed pdf_output_filename. Added grid_level constant to avoid magic numbers in stats_update_var_pt calls.
( e335209 )
68997723+JanGrn at
Gunthers branch 2 (#1002)
( ff0b28e )
noreply at
Bugfix for merge #1000. stderr was not imported in stat_clubb_utilities.F90, causing compilation to fail.
( 3e2c653 )
68997723+JanGrn at

#219 (May 4, 2022, 3:11:07 AM)

Gunthers branch (#999)
( e7d0263 )
noreply at

#218 (May 1, 2022, 3:11:08 AM)

Fixed priority property not working as intended, added text indicating time span plotted in pdf files which was previously only displayed in html files.
( c84772d )
Vince Larson at

#217 (Apr 27, 2022, 3:11:10 AM)

Small bug fix.
( 994bc48 )
Gunther Huebler at
Another similar small bug fix.
( a195ada )
Gunther Huebler at

#216 (Apr 26, 2022, 3:11:09 AM)

Various simple changes to improve performance. All bit-for-bit.
( d3faa9d )
Gunther Huebler at
Pushing loop into calc_stability_correction.
( b54a633 )
Gunther Huebler at

#215 (Apr 22, 2022, 3:11:08 AM)

Gunthers branch (#996)
( c17af72 )
noreply at

#214 (Apr 15, 2022, 3:11:06 AM)

Updates description of generating pyplotgen movies
( 9e84a8e )
noreply at
Set the Priority of nondimensional moments to False.
( 86d4dab )
noreply at

#213 (Apr 13, 2022, 3:11:10 AM)

I added the code for the l_linearize_pbl_winds flag that was originally
( 70e286f )
bmg2 at

#212 (Apr 6, 2022, 3:11:07 AM)

Added idiot-proofing to print a warning message when l_diag_Lscale_from_tau
( d0c9b34 )
bmg2 at

#211 (Mar 30, 2022, 3:11:06 AM)

Added a3_coef_min to the list of CLUBB's tunable parameter and then
( 96059a2 )
bmg2 at

#210 (Mar 26, 2022, 3:11:07 AM)

I added l_relax_clipping to CLUBB's config flags.
( e63d361 )
bmg2 at

#209 (Mar 24, 2022, 3:11:10 AM)

Adding a line to the README to trigger the nightly tests.
( 29c1bb8 )
noreply at

#208 (Mar 22, 2022, 3:11:10 AM)

Removing a line at the top of the README to trigger the nightly tests.
( afafe6f )
noreply at

#207 (Mar 17, 2022, 3:11:07 AM)

Removes a blank line in order to trigger merge with E3SM
( 133eb6a )
noreply at
Pushing column loop into xm_wpxp_clipping_and_stats and monotonic_turbulent_flux_limit. This essentially completes advance_xm_wpxp for now. larson-group/clubb#972
( 580c8c0 )
37674341+huebleruwm at
Replacing the i loop iterator for scalars with sclr.
( c72d8ca )
37674341+huebleruwm at
Pushing loop into advance_xp2_wpxp.
( 47e9d1e )
37674341+huebleruwm at
Moving the lhs_dp1 calculation to outside of xp2_xpyp_lhs. This gives us more flexibility, since we want to pass lhs_dp1 into xp2_xpyp_implicit_stats.
( 3efae61 )
37674341+huebleruwm at
Moving the lmm_stepping and stats calls to immediately after calls to xp2_xpyp_solve. This is because xp2_xpyp_implicit_stats saves things that are saved by scratch variables, and these scratch variables are set by the lhs and rhs setup calls. So for the multiple lhs routine, we need to save the scratch variables immediately after these calls before overwriting them by calling lhs and rhs again for a different variable. Since the stats also saves the variable were solving for, we also have to move the lmm_stepping to before this call.
( eefc4e8 )
37674341+huebleruwm at
Removing need for stats scratch variables by passing lhs terms to save through agument lists. This makes everything better in every way.
( 81be36d )
37674341+huebleruwm at
Adding slicing for some lhs arrays being saved in stats. This was causing bit changing in a few lhs terms when run in multicolumn.
( 757d6ea )
37674341+huebleruwm at
Changing names of dp1 variables for up2 and vp2. Surrounding where they're set to be within a l_stats_samp.
( e92c730 )
37674341+huebleruwm at

#206 (Mar 15, 2022, 3:11:11 AM)

Adds a blank line to trigger git merge with E3SM
( 617f132 )
noreply at

#205 (Mar 11, 2022, 3:11:09 AM)

Removing data copies that we don't need anymore. This still runs correctly on GPUs.
( 4285ec7 )
37674341+huebleruwm at
Making clip_transform_silhs_output use an array of gr. This is how it should have been once the column loop was pushed down into it, but at the time clubb was using gr through a use statement making that not possible.
( 985d685 )
37674341+huebleruwm at
No more need for these data copies anymore now that pdf_params is allocated with ngrdcol rather than pcols.
( 9976b86 )
37674341+huebleruwm at

#204 (Mar 10, 2022, 3:11:09 AM)

Adding a line to trigger the nightly tests.
( f785d33 )
noreply at

#203 (Mar 2, 2022, 3:11:09 AM)

Making setup_pdf_parameters accept ngrdcols size arrays of stats and grid types.
( 0a489d9 )
Gunther Huebler at
Forgot two small changes. larson-group/cam#129
( 8290cd1 )
Gunther Huebler at
Removing need for data copies. larson-group/cam#129
( 3b77fda )
Gunther Huebler at
Changing column loop index from j to i. larson-group/cam#129
( 352cf0e )
Gunther Huebler at

#202 (Feb 26, 2022, 3:11:07 AM)

Implementations of smooth min, max and heaviside function. Added G-Unit tests
( 2bf5ea1 )
68997723+JanGrn at
Fixed and added final test. Everything is now functional
( 510cec1 )
68997723+JanGrn at
Modified the two inequalities in the final test. (for mostly aesthetic reasons)
( f97155a )
68997723+JanGrn at

#201 (Feb 25, 2022, 3:11:11 AM)

Fixing small bug that breaks runs with scalars.
( d0bc4c6 )
Gunther Huebler at

#200 (Feb 24, 2022, 3:11:07 AM)

Gunthers branch (#989)
( d284c46 )
noreply at

#199 (Feb 22, 2022, 3:11:09 AM)

Refactoring to remove need for global stats scratch variables. (#988)
( 65fb263 )
noreply at

#198 (Feb 18, 2022, 3:11:08 AM)

Adds a naming convention for CLUBB's indices
( 42cd7b7 )
noreply at
Pushing loop into solve_xm_wpxp_with_single_lhs (#986)
( 7e2a226 )
noreply at

#197 (Feb 17, 2022, 3:11:06 AM)

Adding 2D version of zt2zm and zm2zt to clubb_api
( f9b6bb6 )
Gunther Huebler at

#196 (Feb 11, 2022, 3:11:11 AM)

Add coding rule to write variables to disk immediately after they are set.
( f069daa )
noreply at

#195 (Feb 10, 2022, 3:11:08 AM)

Moving stats call for uprcp and vprcp to after they are calculated. This fixes the silhs restart test. But does not seem to fix the E3SM or CAM tests that are still failing.
( fc75c88 )
Gunther Huebler at
The last commit was BIT_CHANGING:fc75c887ae516e55f31156a6c1cccaedfaf34ff3 since it does change when uprcp and vprcp are saved to stats output. Was not answer changing though.
( 262b7d9 )
Gunther Huebler at

#194 (Feb 8, 2022, 3:11:08 AM)

Adding a line to trigger the nightly tests.
( 68f91aa )
noreply at

#193 (Feb 5, 2022, 3:11:07 AM)

Breaking up column loop in advance_xm_wpxp_module. larson-group/clubb#972
( 6eac944 )
Gunther Huebler at
Pushing column loop into local functions. larson-group/clubb#972
( fbb92ad )
Gunther Huebler at

#192 (Feb 4, 2022, 3:11:07 AM)

I added a subroutine that prints that values of all PDF parameters in
( 4f9a3b3 )
bmg2 at
Small changes and a loop push. larson-group/clubb#972
( 72be16b )
Gunther Huebler at
Pushing loop into advance_xm_wpxp. larson-group/clubb#972
( b129d6d )
Gunther Huebler at
Making the G_unit test use a dummy column index. This makes it so we don't need an interface for compute_sigma_sqd_w since now we only use it with 2 dimensions. This is just nicer. larson-group/clubb#972
( bcef2c0 )
Gunther Huebler at

#191 (Feb 3, 2022, 3:11:08 AM)

Missed a file to commit, causing lots of compilation failures in Jenkins tests.
( 4483b98 )
Gunther Huebler at
Fixed small bug that slipped through because the G_unit tests use nz=1.
( 2b13ca1 )
Gunther Huebler at
Pushing column index into mixing length routines, not all the way down for the non-tau based calculation. larson-group/clubb#972
( a2bd9f0 )
Gunther Huebler at

#190 (Feb 2, 2022, 3:11:09 AM)

Pushing column index into zm2zt and zt2zm. larson-group/clubb#972
( 86d05e7 )
Gunther Huebler at
Pushing column index into Skx_func and making it a subroutine. larson-group/clubb#972
( 947de49 )
Gunther Huebler at
A variety of small loop pushing. larson-group/clubb#972
( 87a53ff )
Gunther Huebler at

#189 (Jan 29, 2022, 3:11:22 AM)

Intializing sigma_sqd_w_zt when not using ADG1. larson-group/clubb#972
( 43e3ed4 )
Gunther Huebler at
Fixing bug, we were not initializng pdf_params for all columns. larson-group/clubb#972
( 9fafdc8 )
Gunther Huebler at
I updated CLUBB to include new fields to its restart functionality.
( 4329986 )
bmg2 at

#188 (Jan 28, 2022, 3:11:23 AM)

I am updating ice_supersat_frac to be an intent(inout) variable for
( 5074010 )
bmg2 at

#187 (Jan 27, 2022, 3:11:25 AM)

We need to initialize our local pdf_implicit_coefs_terms_zm in certain pdf types. We also don't need to zero out pdf_implicit_coefs_terms arrays, since that's done in the initialization. This should fix segfaults when l_call_pdf_closure_twice=.True. larson-group/clubb#972
( df3bf7f )
Gunther Huebler at

#186 (Jan 26, 2022, 3:11:23 AM)

Making the good version of pdf_params used most places. The bad version is the single column version. larson-group/clubb#972
( 187fe41 )
Gunther Huebler at
Making a commit that officially places the call to the PDF in the "post"
( de28aff )
bmg2 at
Pushing loops into all relevent lowest level routines in pdf_closure. larson-group/clubb#972
( 05c7966 )
Gunther Huebler at
Missing files from previous commit. larson-group/clubb#972
( fc2eb27 )
Gunther Huebler at
Forgot an & symbol.
( a3161e5 )
Gunther Huebler at

#185 (Jan 25, 2022, 3:11:23 AM)

Pushing loop into pdf_closure_module and breaking it up. larson-group/clubb#972
( 604c2a9 )
Gunther Huebler at

#184 (Jan 23, 2022, 3:11:24 AM)

Clarifies debugging messages of thread test
( 4e09f47 )
noreply at

#183 (Jan 22, 2022, 3:11:25 AM)

Pushing loop into pdf_closure and breaking it up. larson-group/clubb#972
( 4b7d05d )
Gunther Huebler at
I changed C_invrs_tau_N2_wp2 from 0.1 to 0.2 to help stop turbulence
( 85a583b )
bmg2 at

#182 (Jan 21, 2022, 3:11:23 AM)

I added error prints to the interface for Morrison microphysics that
( 99c5183 )
bmg2 at
Breaking up column loop in advance_clubb_core. larson-group/clubb#972
( 831646a )
Gunther Huebler at

#181 (Jan 20, 2022, 3:11:24 AM)

Adding l_stats check around stats stuff. This fixes the crashing when stats is disabled. larson-group/clubb#972
( 83b143d )
Gunther Huebler at
Fixing typo in VariableGroupBase.py
( c3db300 )
noreply at
Making single and multi column versions of advance clubb core available through clubb_api. larson-group/clubb#972
( 1a80c99 )
Gunther Huebler at

#180 (Jan 19, 2022, 3:11:24 AM)

Updating pyplotgen's SAM wp3 budgets to include pressure diffusion, pressure scrambling, and the wp3_tp term.
( 6dcce17 )
benjamin.andrew.stephens at
Pushing column loop into advance_clubb_core, and adding interface for it so that we will not need to update any host models. Everything is bit-for-bit, testing all standalone cases and our cam_coarse res run. larson-group/clubb#972
( 0ad5cf6 )
Gunther Huebler at
Adding an error prints subroutine to advance_microphys_module.F90
( ab27fc3 )
bmg2 at

#179 (Jan 17, 2022, 3:11:24 AM)

Add l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zm
( 2f3a8a9 )
noreply at

#178 (Jan 15, 2022, 3:11:23 AM)

Adding script that checks if two nc files contain different output fields, rather than just checking bit-for-bitness between the two. Also making our run_bin_diff script use this new nc comparator instead of linux diff.
( ee117e4 )
Gunther Huebler at
Adjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so that
( 6dff441 )
bmg2 at

#177 (Jan 14, 2022, 3:11:24 AM)

Removing sed command as it is unnessecary. larson-group/sys_admin#763
( 8072476 )
noreply at
This should be BIT_CHANGING, but only because the value of Cx_min should change in the netcdf file. This will not be answer changing.
( 31351cc )
Gunther Huebler at
Change value of Cx_min to match what is in parameters_tunable.F90
( bcb2962 )
noreply at
Adding flags and parameters to the r8029 backwards compatible lists. These do not change the backwards compatible results, so that we aren't relying on source code default values.
( 067d5ca )
Gunther Huebler at
Changing the value of C_invrs_tau_shear from 0.02 to 0.15.
( 3f4e669 )
bmg2 at
Avoiding stats call for variables that are not set when l_diag_Lscale_from_tau is not true.
( 108f6ea )
Gunther Huebler at
Adding line to readme because previous commit will be BIT_CHANGING:108f6ea2c8b3d9357cf551b11a85a2d9a4becc47 in the backwards compatibility run since it will prevent NaNs in the .nc files.
( e000e91 )
Gunther Huebler at

#176 (Jan 13, 2022, 3:11:24 AM)

Making some paramters_silhs variables available from the silhs api
( 9915baa )
Gunther Huebler at
Comment out setting of fatal error
( 6f037c8 )
noreply at
Adding a step to remove idio proofing into backwards compatibility test. larson-group/sys_admin#763
( fc4a639 )
pbroels at
Fixing character conflict with sed string in jenkinsfile.
( 1cda981 )
pbroels at

#175 (Jan 11, 2022, 3:29:40 PM)

Making api version of setup_grid. larson-group/clubb#972
( efea5cc )
Gunther Huebler at

#174 (Jan 11, 2022, 3:11:25 AM)

Insert print about overwriting default flags with namelist values
( 2a9a0f2 )
noreply at
Insert print about overwriting default parameters with namelist values
( ae798c4 )
noreply at
Note that source-code flags and parameter values are overwritten by namelist values
( 8c4c900 )
noreply at
Clarify comments in README
( 1460a66 )
noreply at

#173 (Jan 1, 2022, 3:11:24 AM)

Modifying the generate subcolumn panels function to smoothly plot both CLUBB and WRF-LASSO SILHS subcolumns.
( 722d0f5 )
benjamin.andrew.stephens at

#172 (Dec 30, 2021, 3:11:22 AM)

I am adding more arguments to the argument list for advance_clubb_core
( 9cc76af )
bmg2 at

#171 (Dec 29, 2021, 3:11:24 AM)

Updating CLUBB to pass uprcp and vprcp into and out of advance_clubb_core.
( 74c5428 )
bmg2 at
Now that uprcp and vprcp have been passed through advance_clubb_core,
( 517dd59 )
bmg2 at

#170 (Dec 23, 2021, 3:11:27 AM)

Adding new four-case tuner script and also some minor updates to error.F90 that avoid the "LES is zero" error for the cloud water and cloud fraction.
( 32af472 )
59519056+bstephens82 at
Adding comments and minor cleanup for my last commit about the tuner update.
( f983171 )
59519056+bstephens82 at
Updating error.F90 to include the error statement about LES field being zero as a check.
( c665567 )
59519056+bstephens82 at

#169 (Dec 21, 2021, 3:11:22 AM)

Updates to SAM-style budget plots for CLUBB output.
( ea5b570 )
benjamin.andrew.stephens at

#168 (Dec 18, 2021, 3:11:25 AM)

These changes allow you to call the 4 clubb "advance" subroutines in any
( a7c6126 )
Brian Griffin at
Placing the order variables in a nice, convenient place for testing use.
( 35d03fc )
Brian Griffin at
I reordered advance_clubb_core so that the "Advance xp3" (which is a
( 05a0c45 )
Brian Griffin at
I am committing the idiot-proofing code that forces l_min_xp2_from_corr_wx
( ab8d447 )
Brian Griffin at
I am indenting the portion of the code where the advance subroutines
( 9b22e11 )
Brian Griffin at
Temporarily commenting out the idiot proofing in order to run some tests ...
( 71ab332 )
Brian Griffin at
Now official reinstating the idiot-proofing and turning off the
( 06d48b1 )
bmg2 at
I am committing some idiot proofing in regards to the advance
( fa5559b )
bmg2 at

#167 (Dec 17, 2021, 3:11:23 AM)

Removing a line to trigger the nightly tests. larson-group/sys_admin#763
( 13e9359 )
noreply at

#166 (Dec 16, 2021, 3:11:23 AM)

Adding a line to the readme to trigger the nightly tests.
( 01983ed )
noreply at

#165 (Dec 7, 2021, 3:11:26 AM)

Add "subcolumns" key to LASSO cases in pyplotgen.
( 25efa00 )
noreply at

#164 (Dec 4, 2021, 3:11:25 AM)

Remove clipping from a3_coef.
( 4d88fc6 )
noreply at

#163 (Dec 3, 2021, 3:11:25 AM)

See ticket
( 799c039 )
jan.gruenenwald at
added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk
( 92c6ab4 )
jan.gruenenwald at
See respective messages on the issue 958 on date 10/12/2021
( f5e493c )
jan.gruenenwald at
Added WSUP from SAM to the VariableGroupWs.py in pyplotgen
( a4edc26 )
jan.gruenenwald at
Added sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90
( dc4d9fa )
jan.gruenenwald at
Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details
( b98df1d )
jan.gruenenwald at
Included a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge
( 49c2984 )
jan.gruenenwald at
fixed a typo in pdf_closure_module.f90, line 1284
( 939fbbd )
jan.gruenenwald at
fixed compiler warning regarding w_up_in_cloud
( 01902a4 )
jan.gruenenwald at

#162 (Nov 16, 2021, 3:11:07 AM)

Passing w_up_in_cloud out of advance_clubb_core
( 1c77ed3 )
bmg2 at

#161 (Nov 12, 2021, 3:11:10 AM)

See ticket
( cea625c )
68997723+JanGrn at
added some documentation in pdf_close_module.f90 and started writing of w_up_in_cloud to disk
( 6aa4ad3 )
68997723+JanGrn at
See respective messages on the issue 958 on date 10/12/2021
( e33002f )
68997723+JanGrn at
Added WSUP from SAM to the VariableGroupWs.py in pyplotgen
( 7a8e16c )
68997723+JanGrn at
Added sam file name to DYCOMS_RF02_DO case, fixed the clipping in calc_w_up_in_cloud in pdf_closure_module.f90, and changed long name of w_up_in_cloud in stats_zt_module.f90
( f7cd1d8 )
68997723+JanGrn at
Resolved any issues in the pull request. See https://github.com/larson-group/clubb/pull/970 for details
( 202f781 )
68997723+JanGrn at
Included a check in pdf_closure_module.f90 to check if flag for iw_up_in_cloud is set. Removed iw_up_in_cloud from standard_stats.in to prevent binary diffs in CLUBB output files after merge
( df3b263 )
68997723+JanGrn at
fixed a typo in pdf_closure_module.f90, line 1284
( 335d83b )
68997723+JanGrn at

#160 (Nov 11, 2021, 3:11:11 AM)

Turn off l_Lscale_vert_avg because this flag has been deprecated.
( 1c59a50 )
noreply at

#159 (Nov 9, 2021, 3:11:07 AM)

Add 3 new features to dashboard:
( ae68193 )
Vince Larson at
Updating tolerance_check.py to Python3.
( a931651 )
pbroels at

#158 (Nov 6, 2021, 3:11:07 AM)

I have turned the nu_vert_res_dep family of variables into a derived
( 1b4ca12 )
bmg2 at

#157 (Nov 2, 2021, 3:11:06 AM)

Fixing a minor accounting bug related to the changes in https://github.com/larson-group/clubb/commit/987d63de489d2baa09ad6e1538b2c6dbb7551690. There was some overcounting of the relevant terms.
( cf9db3f )
benjamin.andrew.stephens at

#156 (Oct 31, 2021, 3:11:08 AM)

I forgot to add this necessary subroutine call to the clubb API.
( 3c47dcd )
bmg2 at

#155 (Oct 30, 2021, 3:11:07 AM)

I have passed clubb_params down into advance_xm_wpxp_module.F90.
( f1d888a )
bmg2 at
I have passed down CLUBB's tunable parameters into advance_wp2_wp3_module.F90.
( a73978a )
bmg2 at
I passed down CLUBB's tunable parameters into advance_xp2_xpyp_module.F90
( 438fbd1 )
bmg2 at
Passing down more of CLUBB's tunable parameters.
( fe0fc9f )
bmg2 at
I accidentally removed an important comment in the previous commit.
( cdcc03b )
bmg2 at
Passing down more CLUBB tunable parameters.
( 3c7feca )
bmg2 at
More passing down CLUBB parameters ... whoop-de-doo
( 66af005 )
bmg2 at
Passing down more tunable parameters and removing references to
( 55a47e4 )
bmg2 at
Handling the abomination that is lmin.
( 7c8ad62 )
bmg2 at
Passing tunable parameters into the new tau code.
( 8f26dce )
bmg2 at
Passed down more parameters. Results are bit-for-bit.
( b3b3c90 )
bmg2 at
Passing through more clubb parameters. Bit-for-bit
( a4ea476 )
bmg2 at
Passing down CLUBB's tunable parameters into the setup_pdf_parameters and
( 253982d )
bmg2 at
I passed down CLUBB's tunable parameters into the advance_microphys portion of
( 3a9d575 )
bmg2 at
Passing down CLUBB's tunable parameters into the remainder of the
( 83b29b9 )
bmg2 at
I passed down the forgotten thlp2_rad_coef tunable parameter.
( 7a306fe )
bmg2 at
Passing down CLUBB's tunable parameters into CLUBB's
( b4d5fb7 )
bmg2 at
I am passing down the forgotten parameter, altitude threshold, in
( ae462c9 )
bmg2 at
I am committing the final stage of the "pass-down params" project.
( bb06897 )
bmg2 at
Adding an option to use invrs_tau_N2_iso for C4 terms. The same invrs_tau had been used for C4 and C14 terms, so some adjustments had to be made to separate them out (this was started with an earlier commit: https://github.com/larson-group/clubb/commit/ef3be1b1378bcd1a447f3866c9f88f8cc4764233). The flag is currently set to false so results will be b4b.
( edb7bc8 )
59519056+bstephens82 at
Renaming invrs_tau_zt and invrs_tauw3t to "invrs_tau_wp3_zt" in advance_wp2_wp3 to avoid confusion. This variable is only used for the wp3 C8 term, so one consistent name is simpler, and the name "invrs_tau_zt" is already used by another variable in advance_clubb_core.
( 17d242a )
59519056+bstephens82 at
Adding comments for clarity.
( a29c355 )
59519056+bstephens82 at

#154 (Oct 28, 2021, 3:11:08 AM)

Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.
( 987d63d )
59519056+bstephens82 at
Updates as requested to the l_use_tke_in_K_dfsn code:
( 79bc651 )
59519056+bstephens82 at

#153 (Oct 27, 2021, 3:11:07 AM)

Uncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables.
( 9f1e1ad )
benjamin.andrew.stephens at

#152 (Oct 23, 2021, 3:11:11 AM)

These updates incorporate some of Shixuan Zhang's changes, including:
( 95d7773 )
benjamin.andrew.stephens at

#151 (Oct 22, 2021, 3:11:10 AM)

Adding jenkins file
( 5fccf76 )
Gunther Huebler at
Changing name of jenkins tests. larson-group/clubb#960
( f47ad90 )
Gunther Huebler at
Renaming
( 39843be )
Gunther Huebler at

#150 (Oct 21, 2021, 3:11:08 AM)

Add a scatterplot of residual biases versus default-simulation biases.
( 8c2d853 )
Vince Larson at

#149 (Oct 15, 2021, 3:11:09 AM)

Commented out the k=1 boundary conditions in diffusion_zm_lhs and diffusion_zt_lhs, since these are not currently fed into the final LHS matrix. I included comments to describe why this was done. Results are b4b.
( 41d4534 )
benjamin.andrew.stephens at
Adding Jenkinsfile for new clubb backwards compatibility test. larson-group#960
( 0fdf13c )
Gunther Huebler at
Modifying jenkins script. larson-group/clubb#960
( edf396c )
Gunther Huebler at

#148 (Oct 13, 2021, 3:11:11 AM)

Removing line to trigger the nightly tests for all repos.
( 33d4755 )
noreply at

#147 (Oct 8, 2021, 3:11:08 AM)

Update README.md
( 8a4711c )
noreply at

#146 (Oct 5, 2021, 3:11:08 AM)

Add a blank line to trigger nightly tests.
( 7db479d )
noreply at

#145 (Oct 2, 2021, 3:11:07 AM)

Updates to separate out C4 and C14 in advance_xp2 module. This will make it easier to control which invrs_tau_* variable multiplies each term for example.
( ef3be1b )
59519056+bstephens82 at
Changing the name of dummy_1d variables for clarity.
( 3d3b367 )
59519056+bstephens82 at

#144 (Sep 25, 2021, 3:11:06 AM)

I am fixing a bug that was introduced in 6b0348e, where the logical
( 74d565b )
bmg2 at

#143 (Sep 23, 2021, 3:11:08 AM)

Updates to pyplotgen to include LASSO cases. Currently the WRF benchmark file path is not going to be generally valid. We will probably want to add the WRF-LASSO benchmark files to the benchmark repo, but they will need some additional processing to get rid of large 3D variables that we don't need, or possibly add some additional variables that we want.
( 511bcf1 )
59519056+bstephens82 at
Some updates to the paths for the WRF-LASSO benchmark files, and some minor updates so that a few more variables will show up from both the WRF-CLUBB runs and the WRF-LASSO benchmark runs.
( 381d439 )
59519056+bstephens82 at
Adding wpuiui to VariableGroupWs.py
( f6afded )
59519056+bstephens82 at

#142 (Sep 22, 2021, 3:11:09 AM)

Add a blurb on plotting CAM output to the pyplotgen README.
( 25b614d )
noreply at

#141 (Sep 17, 2021, 3:11:08 AM)

Adding in helper scripts to replace variables as in ticket #886 and ticket #733.
( 0957eb9 )
rhodesk at

#140 (Sep 16, 2021, 3:11:06 AM)

Add space to trigger nightly tests. For larson-group/sys_admin#755.
( ca98418 )
noreply at

#139 (Sep 14, 2021, 3:11:08 AM)

Remove space to trigger autoupdate. larson-group/sys_admin#755
( a1a93a8 )
noreply at

#138 (Sep 11, 2021, 3:11:08 AM)

Adding space to trigger autoupdate. larson-group/sys_admin#755
( b203a41 )
Gunther Huebler at

#137 (Sep 3, 2021, 3:11:09 AM)

Pushing k loop down through clip_variance_level.
( 645764f )
rhodesk at
Udpates to make it possible for us to keep certain parameters equal to each other during tuning.
( 15b0b34 )
59519056+bstephens82 at
Updates to improve error checking for the tuner, updates to comments.
( 3fd43e5 )
59519056+bstephens82 at
Getting rid of a duplication of code.
( 5d39682 )
59519056+bstephens82 at
Updating name of l_vary_params_together flag to l_keep_params_equal, since this is probably more clear and also is more consistent with my comments in the code.
( f616391 )
59519056+bstephens82 at
Further tuner updates. These updates introduce the option to give a minimum value for tuned parameters. Error checks are included.
( 7b4081b )
59519056+bstephens82 at
Removing an old comment
( a5d0b30 )
59519056+bstephens82 at
Updating some comments related to the tuner updates.
( b26df40 )
59519056+bstephens82 at
Update README
( dba1ee7 )
59519056+bstephens82 at
Minor updates requested in pull request: renaming a variable and adding some comments.
( 6958fdf )
59519056+bstephens82 at

#136 (Sep 2, 2021, 3:11:07 AM)

Removing a couple of unused parameters from use statement.
( da8e999 )
noreply at

#135 (Sep 1, 2021, 3:11:10 AM)

Removing blank line...
( 5e8c1c5 )
noreply at

#134 (Aug 31, 2021, 3:11:08 AM)

Adding in l_vary_convect_depth as requested.
( 728531a )
72510114+RhodesKeegan at

#133 (Aug 28, 2021, 3:11:07 AM)

Change normalization of sensitivity matrix.
( 6074d7b )
Vince Larson at

#132 (Aug 26, 2021, 3:11:09 AM)

Updating the surface clipping coefficient...
( 1656d87 )
noreply at
Adding blank line to note that my previous commit was BIT_CHANGING.
( e8cfbf1 )
noreply at

#131 (Aug 25, 2021, 3:11:08 AM)

Updates to tuner to print the improvement in the individual variables at the end of the tuner run, in addition to the total improvement.
( 02cccd2 )
59519056+bstephens82 at
Changing the denominator in the variable-by-variable expression so that the individual terms add up to the total percent improvement.
( 8901b7c )
59519056+bstephens82 at

#130 (Aug 21, 2021, 3:11:08 AM)

Eliminating l_upwind_wpxp_ta flag.
( fe04ac9 )
rhodesk at

#129 (Aug 20, 2021, 3:11:09 AM)

Fixing compilation error caused by flag removal
( ab1dfbe )
rhodesk at

#128 (Aug 18, 2021, 3:11:09 AM)

Eliminating l_update_pressure flag.
( 9616340 )
rhodesk at

#127 (Aug 17, 2021, 3:11:09 AM)

Update argument list of analyzeSensMatrix in the unit tests
( afd382b )
Vince Larson at

#126 (Aug 14, 2021, 3:11:09 AM)

Removing exit command left by mistake
( 69bb201 )
noreply at
Eliminating l_single_C2_Skw flag.
( 50c4f28 )
72510114+RhodesKeegan at
Update to run_tuner.bash to save the contents of the error_*.in file to the tuner log at the end of the run.
( 7c99d3b )
59519056+bstephens82 at
Eliminating l_include_ice and sat_ice_ratio.
( 1bdc13a )
rhodesk at

#125 (Aug 13, 2021, 3:11:07 AM)

Eliminating l_use_wp3_pr3 flag.
( 6426212 )
rhodesk at
Eliminating l_clip_semi_implicit flag.
( 828253e )
rhodesk at
Adding intent labels for subroutines throughout clubb.
( f09a7aa )
rhodesk at
Replacing all mentions of /usr/local/les_and_clubb_benchmark_runs with the new/home/pub location. larson-goup/sys_admin#750
( 4ebb5de )
pbroels at
Updates to tuner script to prevent it from moving output files that have not been tuned.
( 70fd151 )
59519056+bstephens82 at
BIT_CHANGING:af17ebf83826423f24165dab46ce098bf39444dd
( d4f17af )
noreply at

#124 (Aug 12, 2021, 3:11:07 AM)

Changing ifort environment variable file to new ifort file. larson-group/sys_admin#750
( e167731 )
pbroels at
Eliminating l_apply_rule_to_pdf_params flag.
( 6b0348e )
rhodesk at
Removing incorrect name from COAMPS variable list
( 4ec95c3 )
noreply at
Eliminating l_ub_const_deriv flag.
( 707b86b )
rhodesk at
Eliminating l_equation_21 flag.
( 3eee722 )
rhodesk at
Adding additional ifort environment script to test to fix compile errors. larson-group/sys_admin#750
( 7d1479a )
pbroels at
Adding ifort environment script to the compile step for all ifort scripts.
( 188ccd1 )
pbroels at
Eliminating l_wp3_2nd_buoyancy flag.
( 17bf905 )
rhodesk at
Updates to pyplotgen that will include all invrs_tau_* lines in a single plot, and also updates to prevent SAM and COAMPS lines from being plotted when those models will never have the variables being plotted.
( 55cfb66 )
59519056+bstephens82 at
Updates to include all invrs_tau_* variables in the output stats files, and pyplotgen updates to plot all of the invrs_tau_* variables on two separate plots along with the other "base" variables.
( af17ebf )
59519056+bstephens82 at
Eliminating l_refine_grid_in_cloud and l_interactive_refined.
( f24ca42 )
rhodesk at
Updating the tuner README to clarify how the user should set the initmax values.
( ec659b0 )
benjamin.andrew.stephens at
Eliminating l_use_experimental_term_pr2 and l_use_vert_avg_winds
( 815079a )
rhodesk at
Updating run_tuner.bash so that it will run the tuner test cases with the initial tunable_parameters.in (i.e. before tuning) to make it easier to compare the optimized runs with the initial runs. The initial runs are saved in a separate directory.
( c2fc8c5 )
59519056+bstephens82 at
Removing superfluous bash script commands.
( e8130a5 )
59519056+bstephens82 at

#123 (Aug 11, 2021, 3:11:09 AM)

Attempt to add error bars to the metrics predictions
( 735794b )
Vince Larson at
Eliminating l_nu_grid_dependent as requested.
( 404e28e )
rhodesk at
Eliminating l_use_buoy_mod_Km_zm.
( 709d54d )
rhodesk at
Eliminating l_iter_xp2_xpyp flag.
( 37847d5 )
rhodesk at

#122 (Aug 10, 2021, 3:11:10 AM)

Include comment about current tuner compiler issue
( c3513bf )
noreply at

#121 (Aug 5, 2021, 3:11:07 AM)

Updates to help run multiple tuner cases. The date/time assertion check in error.F90 was not working correctly for multiple cases, since instead of updating the CLUBB date/time based on the case, it was just using one CLUBB case for all LES cases and crashing.
( f6a2c0f )
59519056+bstephens82 at
Fix typo
( 2c9bdf2 )
noreply at

#120 (Aug 4, 2021, 3:11:08 AM)

Adding some new, but still simple, parsing capabilities to input_netcdf.F90 so that the tuner will not crash if netcdf dates are in a slightly different format. Now, instead of assuming the format of the string, the code will search for the positions of the two hyphens and the two colons and get the date and time based on that.
( 369b0fe )
59519056+bstephens82 at
Adding some spaces to make the code a little nicer.
( a503896 )
59519056+bstephens82 at
Adding comments and renaming variables per Vince's comments. Some minor cleaning.
( 1120328 )
59519056+bstephens82 at
Adding intent labels for subroutines throughout clubb.
( 5e293e1 )
rhodesk at
Removing unnecessary constant from use statement
( 885de7c )
noreply at

#119 (Aug 3, 2021, 3:11:09 AM)

Adding comments labeling subroutine calls with intent.
( 67dc789 )
rhodesk at
Removing dependency on /home/pub and moving it to /home/jenkins larson-group/sys_admin#735
( 1abe50b )
pbroels at

#118 (Jul 31, 2021, 3:11:07 AM)

Removing l_interp_prescribed_params from setup_clubb_pdf_params.
( d42ffb8 )
rhodesk at
Modifying run_timestep_tests.bash to run only 10 minute and above timesteps and exit immediately if the 10 mintue timestep fails. larson-group/sys_admin#749
( 70e26ca )
pbroels at
Adding new timestep test to clubb jenkins tests. larson-group/sys_admin#749
( c07e805 )
pbroels at
Fixing false printing of "All cases ran to completion."
( c00a83f )
noreply at
Updating clubb_tuner.F90 to resolve an issue where the optimized tunable_parameter_*.in file was not being created by default. Now it will always be created when the tuner is run, as it should be.
( cdc1c0f )
59519056+bstephens82 at
Updating wording
( a6feee3 )
59519056+bstephens82 at
Adding in the Mstandard flag to the pgi compiler settings.
( c75c501 )
rhodesk at
Updating pyplotgen.py and README to clarify file name mismatch error and how to resolve it.
( b19fddf )
59519056+bstephens82 at
Fixing typo.
( 9a6b7d7 )
59519056+bstephens82 at
Clarifying README.
( 6d8db4b )
59519056+bstephens82 at
Placing line breaks in the new error message and minor wording updates.
( f5e75e3 )
59519056+bstephens82 at

#117 (Jul 30, 2021, 3:11:07 AM)

Fixing coding standard viloation of lines exceeding 100 characters.
( 2c846a5 )
rhodesk at
Adding wp3_pr_tp (aka "negative nose" term) to wp3 equation. Related to #920.
( 9e4a950 )
59519056+bstephens82 at
Changing the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine. Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero.
( fa20b10 )
59519056+bstephens82 at
Adding the new pressure-related terms, wp2_pr_dfsn and wp3_pr_tp, to the --sam-style-budgets option in Pyplotgen.
( be8c34c )
benjamin.andrew.stephens at

#116 (Jul 29, 2021, 9:05:38 AM)

Modifying run_full_api_diagnostics.bash, create_module_table.py, and usage_analyzer.py to create and save tables similar to the nightly tests. larson-group/sys_admin#749
( 228f3ae )
pbroels at
Modigying jenkins test to display tables after test run. larson-group/sys_admin#749
( 05678fb )
pbroels at

#115 (Jul 29, 2021, 3:11:06 AM)

Reverting accidental change to Jenkinsfile. larson-group/e3sm#38
( e49cd5f )
Gunther Huebler at
Updating new Jenkinsfile. larson-group/e3sm#38
( 9c5247b )
Gunther Huebler at
Updating Jenkinsfile because sys_admin files changed names.
( 011c588 )
Gunther Huebler at

#114 (Jul 28, 2021, 3:11:06 AM)

Moving the stats variables to module variables of clubb_driver.
( 2665ccc )
72510114+RhodesKeegan at
Fixing missing comment
( e867703 )
72510114+RhodesKeegan at
Adding new Jenkinsfile for new bit diff test for clubb. larson-group/e3sm#38
( 524d1f7 )
Gunther Huebler at
Making Jenkinsfile not a directory... larson-group/e3sm#38
( 6da4178 )
Gunther Huebler at
Changing job name in jenkins file. larson-group/e3sm#38
( 92d538a )
Gunther Huebler at

#113 (Jul 27, 2021, 3:11:07 AM)

Code changes to introduce wp2_pr_dfsn, the wp2 pressure diffusion term, consistent with Lumley 1978. Related to #920.
( 3f9d6b4 )
59519056+bstephens82 at
Fixing comment for the wp2_term_pr_dfsn subroutine. Related to #920.
( 6440a7c )
59519056+bstephens82 at
Updating wp3 pressure diffusion term to be consistent with the Lumley 1978 formula for the perturbation pressure. For #920.
( e96cf0f )
59519056+bstephens82 at
Making requested changes to the wp2 pressure diffuion additions, including correcting some grid-level related issues. Related to #920.
( de859ba )
59519056+bstephens82 at
Fixing some comments.
( fd3e807 )
59519056+bstephens82 at
Correcting a typo bug and adding some descriptive comments to two new variables. This is a BIT_CHANGING commit becuase it will affect the newly calculated variables and descriptions in the output files, but it won't affect any plotted results. Related to #920.
( e786f8c )
benjamin.andrew.stephens at

#112 (Jul 24, 2021, 3:11:08 AM)

Add new plots and calculations to dashboard.
( 3320eef )
Vince Larson at
I changed the name to calc_responder_driver because I thought that
( a25fce6 )
bmg2 at

#111 (Jul 23, 2021, 3:11:08 AM)

Feeding stats variables through the argument lists of needed subroutines.
( 5776f23 )
72510114+RhodesKeegan at
Fixing spacing issues along with placing the stats varibales on their own lines.
( 5659a5e )
72510114+RhodesKeegan at
Changing more subroutines to include stats vars in their arg lists.
( 2450be6 )
72510114+RhodesKeegan at
Fixing incorrect subroutine arg list
( cfbd34d )
72510114+RhodesKeegan at
Fixing host models not compiling.
( 914e5a0 )
72510114+RhodesKeegan at
Fixing argument list so that way the coding standard is upheld.
( 23323e4 )
72510114+RhodesKeegan at

#110 (Jul 16, 2021, 3:11:10 AM)

Feeding gr through arg list for functions outside of CLUBB_core.
( e14ae2a )
rhodesk at
Reflecting changes made to clubb_api_module's subroutine's argument lists. #886.
( 266e64b )
rhodesk at
Moving gr from being a public variable in clubb_driver to being defined locally.
( 203e873 )
rhodesk at
Defining gr at the top level main as a local variable and feeding it down as needed.
( b3a0884 )
rhodesk at
Removing hardcoded references to passwords. larson-group/sys_admin#733
( 1453b46 )
pbroels at
The purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. Please ignore this commit unless everything breaks, in which case this is the reason why everything is broken.
( f36d52a )
rhodesk at
Changing jenkins test directory names to be the same as the test name. larson-group/sys_admin#735
( 3b4e050 )
pbroels at
Delete blank line in order to trigger nightly tests.
( 51416c2 )
noreply at
Adding name specific functionality to prevent workspace removal and emails. larson-group/sys_admin#735
( 6b6ac37 )
pbroels at
Fixing syntax error preventing jenkins tests from running. larson-group/sys_admin#727
( 775ce91 )
pbroels at
Add error header for CLUBB in CAM
( cb7db4b )
noreply at
Adding some preprocessor directives
( e201897 )
noreply at
Fixing the ordering of gr in the arg list and dropping usage of grid_class.
( 6c039b2 )
rhodesk at
Fixing the ordering of gr in the clubb_api arg list for affected subroutines.
( b19b677 )
rhodesk at
Add blank line to trigger nightly tests.
( 6cf3881 )
noreply at
Fixing coding standard violations
( 2196f2d )
rhodesk at
Removing a few lines from wangara_sounding.in to be consistent with SAM "snd" and "lsf" files.
( 381f3bd )
benjamin.andrew.stephens at
Removing blank line to note that yesterday's changes to the Wangara sounding file was BIT_CHANGING.
( 908d888 )
noreply at
Adding new SAM-LES WANGARA benchmark file to Pyplotgen.
( cb5d433 )
benjamin.andrew.stephens at
Add to dashboard outputs related to observations.
( b877d82 )
Vince Larson at
Improving error messages in setup_clubb_core. larson-group/e3sm#38
( 6b03a70 )
Gunther Huebler at
Changing if conditional statements to the name of the tests to ensure all features work as intended. larson-group/sys_admin#735
( 8ce7991 )
pbroels at
Fixing error in clubb_error_handling_gfortran_test Jenkinsfile from previous commit to allow for the test to run.
( 658573b )
pbroels at
Changing Pillow version number in requirements.txt to solve issue brought up by dependabot. larson-group/sys_admin#741
( 1240714 )
pbroels at

#107 (Jul 13, 2021, 3:11:08 AM)

Changing Pillow version number in requirements.txt to solve issue brought up by dependabot. larson-group/sys_admin#741
( 1240714 )
pbroels at

#104 (Jul 10, 2021, 3:11:07 AM)

Fixing error in clubb_error_handling_gfortran_test Jenkinsfile from previous commit to allow for the test to run.
( 658573b )
pbroels at

#103 (Jul 9, 2021, 3:11:08 AM)

Changing if conditional statements to the name of the tests to ensure all features work as intended. larson-group/sys_admin#735
( 8ce7991 )
pbroels at

#102 (Jul 8, 2021, 3:11:07 AM)

Improving error messages in setup_clubb_core. larson-group/e3sm#38
( 6b03a70 )
Gunther Huebler at

#101 (Jul 7, 2021, 3:11:10 AM)

Add to dashboard outputs related to observations.
( b877d82 )
Vince Larson at

#97 (Jul 3, 2021, 3:11:07 AM)

Fixing the ordering of gr in the arg list and dropping usage of grid_class.
( 6c039b2 )
rhodesk at
Fixing the ordering of gr in the clubb_api arg list for affected subroutines.
( b19b677 )
rhodesk at
Fixing coding standard violations
( 2196f2d )
rhodesk at
Removing blank line to note that yesterday's changes to the Wangara sounding file was BIT_CHANGING.
( 908d888 )
noreply at
Adding new SAM-LES WANGARA benchmark file to Pyplotgen.
( cb5d433 )
benjamin.andrew.stephens at

#96 (Jul 2, 2021, 3:11:07 AM)

Adding some preprocessor directives
( e201897 )
noreply at
Removing a few lines from wangara_sounding.in to be consistent with SAM "snd" and "lsf" files.
( 381f3bd )
benjamin.andrew.stephens at

#95 (Jul 1, 2021, 12:24:14 PM)

Add blank line to trigger nightly tests.
( 6cf3881 )
noreply at

#92 (Jun 30, 2021, 11:56:52 AM)

Feeding gr through arg list for functions outside of CLUBB_core.
( e14ae2a )
rhodesk at
Reflecting changes made to clubb_api_module's subroutine's argument lists. #886.
( 266e64b )
rhodesk at
Moving gr from being a public variable in clubb_driver to being defined locally.
( 203e873 )
rhodesk at
Defining gr at the top level main as a local variable and feeding it down as needed.
( b3a0884 )
rhodesk at
Delete blank line in order to trigger nightly tests.
( 51416c2 )
noreply at
Adding name specific functionality to prevent workspace removal and emails. larson-group/sys_admin#735
( 6b6ac37 )
pbroels at
Fixing syntax error preventing jenkins tests from running. larson-group/sys_admin#727
( 775ce91 )
pbroels at

#92 (Jun 30, 2021, 11:56:52 AM)

Feeding gr through arg list for functions outside of CLUBB_core.
( e14ae2a )
rhodesk at
Reflecting changes made to clubb_api_module's subroutine's argument lists. #886.
( 266e64b )
rhodesk at
Moving gr from being a public variable in clubb_driver to being defined locally.
( 203e873 )
rhodesk at
Defining gr at the top level main as a local variable and feeding it down as needed.
( b3a0884 )
rhodesk at
Delete blank line in order to trigger nightly tests.
( 51416c2 )
noreply at
Adding name specific functionality to prevent workspace removal and emails. larson-group/sys_admin#735
( 6b6ac37 )
pbroels at
Fixing syntax error preventing jenkins tests from running. larson-group/sys_admin#727
( 775ce91 )
pbroels at
Add error header for CLUBB in CAM
( cb7db4b )
noreply at

#90 (Jun 29, 2021, 3:11:06 AM)

Changing jenkins test directory names to be the same as the test name. larson-group/sys_admin#735
( 3b4e050 )
pbroels at

#85 (Jun 25, 2021, 3:11:08 AM)

Moving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB.
( e0c9e84 )
rhodesk at

#84 (Jun 22, 2021, 3:11:11 AM)

Adding a line to the README to trigger the nightly tests.
( 58e4ef4 )
noreply at

#83 (Jun 17, 2021, 3:11:11 AM)

Fixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format.
( a4f5f73 )
benjamin.andrew.stephens at
Fixing a typo from an earlier commit.
( 110e594 )
noreply at

#82 (Jun 16, 2021, 3:11:10 AM)

Removing gr as a module variable from grid_class.
( cf466bc )
rhodesk at

#81 (Jun 11, 2021, 3:11:07 AM)

Feeding gr through the arg list where need only in the CLUBB_core dir.
( ddd58c6 )
rhodesk at
Reverted changes to clubb_api. For #886
( d90832a )
rhodesk at
Replacing use gr statements with feeding gr throught the arg list.
( a6a774f )
rhodesk at
Fixed spacing issue when adding in gr. BFB identical. For #886.
( fead6c4 )
rhodesk at

#80 (Jun 9, 2021, 3:11:08 AM)

Adding proper indentation to needed files.
( bb056a9 )
rhodesk at
Fixing spacing issue on blank lines. #886
( e2bc683 )
rhodesk at
Fixed comment changes. #886
( dc41c66 )
rhodesk at
Fixed incorrect spacing on use
( 76d990d )
rhodesk at
Revert "Fixed incorrect spacing on use"
( 781232f )
rhodesk at
Fixed spacing
( 41dc0c6 )
rhodesk at
Fixed spacing going too far
( 1c0d64c )
rhodesk at
Fixed comments being pushed over
( 30ef379 )
rhodesk at
Fixed not all variables being indented properly
( 49f5b9c )
rhodesk at
Fixed indentation going beyond variables
( 03ef4fb )
rhodesk at
Fixed file_functions indentation being off
( fde84a9 )
rhodesk at
Fixed indentation on operations being wrong
( 0ff79a5 )
rhodesk at
Reverted incorrect changes to new_pdf and new_hybrid_pdf
( 9a1a10e )
rhodesk at
Replacing the hardcoded path variables with larson-group.sh variable definitions, see here https://github.com/larson-group/sys_admin/blob/master/set_larson-group_paths/larson-group.sh)
( 4db3def )
pbroels at

#79 (Jun 3, 2021, 3:11:10 AM)

Changed some elements of clubb to allow for better script execution
( 746a6ed )
rhodesk at
Fixed clubb not compiling
( 3f740c1 )
rhodesk at
Revert "Update Case_definitions.py"
( ad963d9 )
isenfireldc at

#78 (Jun 2, 2021, 3:11:11 AM)

Update coding standard on indentation.
( 4c6aa5c )
noreply at

#77 (May 29, 2021, 3:11:11 AM)

Add "coding standards" so that github search can find this wiki page.
( 6fcac51 )
noreply at
Fixing fortran standards violation causing compiler errors with nvfortran. See larson-group/clubb#900 and larson-group/clubb#928.
( 60f9ff5 )
Gunther Huebler at

#76 (May 28, 2021, 3:11:08 AM)

Add rule to name subroutines using verbs.
( b0feee8 )
noreply at

#75 (May 26, 2021, 3:11:07 AM)

Makes surface clipping of wp3 consistent with clipping aloft, per #921. This is BIT_CHANGING since it affects how clipping is applied near the surface.
( 5e53e0c )
59519056+bstephens82 at
Deleting comments around the old "magic number" for the near-surface clipping.
( e908c38 )
59519056+bstephens82 at

#74 (May 24, 2021, 3:11:11 AM)

Update Case_definitions.py
( 0a67773 )
noreply at

#73 (May 23, 2021, 3:11:09 AM)

Added intent comments.
( 2550ba1 )
rhodesk at
Added intent comments.
( a00e509 )
rhodesk at
Added intent comments for advance_xp2_xpyp_module.F90.
( 7887bf5 )
rhodesk at

#72 (May 15, 2021, 3:11:10 AM)

Introduce user-chosen scaling factor for dashboard plots.
( 6598213 )
Vince Larson at
Removing one instance of "l_input_fields"...
( cd1b872 )
noreply at

#71 (May 14, 2021, 3:11:08 AM)

Plot fractional approximate biases based on log-transformed parameter values.
( 0239e20 )
Vince Larson at
Removing some "use" statement variables from advance_clubb_core, since they are no longer used here but are now used in mixing_length.F90.
( 3070dc3 )
benjamin.andrew.stephens at
Fixed comment regarding wp3 splatting term.
( 6fa16e4 )
benjamin.andrew.stephens at
Pyplotgen update: adding an "if" statement to correct a problem when plotting movies of SAM budgets.
( d848bcb )
benjamin.andrew.stephens at

#70 (May 13, 2021, 3:11:06 AM)

Renamed unit_var_test --> uninit_var_test to reflect the purpose of the test.
( 5907978 )
benjamin.andrew.stephens at
Setting l_update_pressure = .false. since it was causing a problem with the MC3E test and is turned off in all host models anyway.
( a21e1e8 )
benjamin.andrew.stephens at
Removing "if" statement around calculation of wp4 in pdf_closure_module.F90 and the same "if" statement around some further manipulation of wp4 in advance_clubb_core. Results are bit-for-bit with this change, since normally all cases calculate wp4 anyway since the "if" condition was always satisfied in normal runs (but not, for example, in some tuning runs). This was done because the new wp3_pr_dfsn term needs wp4 in its current formulation so it needs to always be calculated.
( 0e8ed5d )
benjamin.andrew.stephens at

#69 (May 12, 2021, 3:11:08 AM)

Adding some new code that puts the diffusion term d(wp2*em)/dz into a new function, creates a new wp3 budget term (wp3_pr_dfsn), and adds that new budget term to pyplotgen.
( 3523145 )
59519056+bstephens82 at
Adding new coefficient to control the wp3 pressure diffusion term.
( d1363bc )
59519056+bstephens82 at
Some minor updates to advance_wp2_wp3 relevant to the pr_turb and pr_dfsn terms.
( ea19b31 )
59519056+bstephens82 at
Converting em*d(em)/dz to d(em^2)/dz in the wp3_pr_turb term and fixing a typo.
( 513df8d )
59519056+bstephens82 at
Renaming C_wp3_turb --> C_wp3_pr_turb (BIT_CHANGING due to name change in netcdf output).
( c5e4581 )
59519056+bstephens82 at
Resetting C_wp3_pr_dfsn constant to zero in two tunable_parameters.in files since it was set to 0.1 by mistake.
( 40e9f58 )
59519056+bstephens82 at
Pyplotgen update:
( 59f2105 )
59519056+bstephens82 at
These changes add the new fourth-order moment variables wp2up2 and wp2vp2 to the CLUBB code. This requires a new function in pdf_closure_module since they must be calculated separately with a new formula, and they are fed through into advance_wp2_wp3 for use with the pr_dfsn subroutine. They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING.
( 9a63bd6 )
59519056+bstephens82 at
Renaming parameter C_wp3_turb-->C_wp3_pr_turb in the alternative tunable_parameters files.
( 6e1d9b0 )
59519056+bstephens82 at
Putting the wp3_pr_turb formulation back to its d(rho*wp2*em)/dz form. This would be a BIT_CHANGING commit since it would change the answers for the pr_turb term. However once this branch is merged into the master branch, results should be bit-for-bit since this term was only modified in the alternate branch.
( 9864f9b )
59519056+bstephens82 at
Pyplotgen updates: adding new wp3_pr_dfsn term to SAM style budgets.
( a922aca )
benjamin.andrew.stephens at
Added intent comments for the following files:
( 103b65d )
rhodesk at

#68 (May 5, 2021, 3:11:11 AM)

Add extra example to pyplotgen quickstart guide
( a39500c )
noreply at
Changed safeguard threshold in sigma_sqd_w.
( e9bf3c5 )
rhodesk at
This commit is not BIT_CHANGING
( 72aec8f )
noreply at

#67 (May 4, 2021, 3:11:07 AM)

Add parameter value spread to dashboard plots.
( c0d6d8c )
Vince Larson at
Added in sqrt_Ri_zm to all_stats.in #909
( 8f5917c )
rhodesk at
clubb warnings introduced from merge have been removed #909
( 97afa09 )
rhodesk at
moved sqrt_Ri_zm from vars_zt to vars_zm in all_stats.in #909
( 105a83f )
rhodesk at

#66 (May 1, 2021, 3:11:09 AM)

Pushing loops related to pdf_params down. larson-group/cam#129
( 24a8863 )
Gunther Huebler at

#65 (Apr 30, 2021, 3:11:10 AM)

Pyplotgen updates:
( 9533778 )
59519056+bstephens82 at
Pyplotgen updates:
( 765cfc2 )
59519056+bstephens82 at
Pyplotgen update: Edit titles and axis titles for new SAM stats
( d562676 )
59519056+bstephens82 at
Adding second dimension to allocatable arrays in pdf_parameter type. This also requires lots of dummy dimensions in clubb where pdf_params is used, since clubb only works over a single column, but silhs does not need such a dummy dimension. larson-group/cam#129
( dcb8277 )
Gunther Huebler at
Fixing lines that exceed 100 characters.
( 2470a3d )
Gunther Huebler at
Pass parameter error bars up to dashboard.
( 3603e92 )
Vince Larson at
Update netcdf sensitivity files in dashboard.
( 506e1b3 )
Vince Larson at

#64 (Apr 28, 2021, 3:11:09 AM)

Changed ustar from an array to a scalar issue #909
( 0e4d2fd )
rhodesk at
Renamed Ri_zm to sqrt_Ri_zm and iRi_zm to isqrt_Ri_zm #909
( bf8daf8 )
rhodesk at
Created new subroutine and ensured it's BFB. All cases run sucessfully #909
( 25198f3 )
rhodesk at
added in missing flag which was causing memory errors #909
( 3a95678 )
rhodesk at
confirmed BFB with e3sam flag set to false and true, no other issues detected in mixing_length #909
( d8c2f72 )
rhodesk at
Add error estimate for parameter values. Still incomplete.
( 8f782b2 )
Vince Larson at
Reformatted mixing length to be more compliant with the coding standard #909
( 04e11e0 )
rhodesk at
added a reference to new subroutine #909
( 8c8ef1f )
rhodesk at

#63 (Apr 24, 2021, 3:11:10 AM)

Formatting and condensing if statements. All bit-for-bit. larson-group/cam#129
( 221817c )
Gunther Huebler at
Making hydromet_pdf_params optional in setup_pdf_parameters. larson-group/cam#129
( 8edf8d7 )
Gunther Huebler at

#62 (Apr 23, 2021, 3:11:11 AM)

Separating precip fractions from hyrdromet_pdf_params and creating a type of it's own for it. This is bit-for-bit. larson-group/cam#129
( a01f2fd )
Gunther Huebler at

#61 (Apr 22, 2021, 3:11:07 AM)

Add sensitivity .nc files for new P3 parameters
( ba75fa6 )
Vince Larson at
Add metric error plot to dashboard.
( 048fd0d )
Vince Larson at
Update stats_zm_module.F90
( 910fbc7 )
noreply at
Update README
( 00620fc )
noreply at
Adding dummy dimensions to calls to procedures that operate over 2 dimensions now, and remove 1D versions of those procedures. larson-group/cam#129
( 6b4d4d2 )
Gunther Huebler at

#60 (Apr 20, 2021, 3:11:06 AM)

Add new sensitivity runs to dashboard
( 48f4b54 )
Vince Larson at

#59 (Apr 17, 2021, 3:11:06 AM)

Add principal components line to dashboard plots.
( bca7031 )
Vince Larson at

#58 (Apr 16, 2021, 3:11:11 AM)

This commit adds several new statistics output variables, including <w'^2p'>, and a new subroutine to compute bivariate 4th-order moments. The new variables are added to the default RUNDATA/lst file.
( 3d5fd80 )
benjamin.andrew.stephens at

#57 (Apr 14, 2021, 3:11:10 AM)

Plot fractional biases and parameter value changes on dashboard.
( 4082846 )
Vince Larson at
Simplify entry of metrics and parameter values.
( 9420aae )
Vince Larson at

#56 (Apr 13, 2021, 3:11:08 AM)

Pyplotgen changes:
( 25706ff )
benjamin.andrew.stephens at
Updating output variables with DIFF to DFSN to clarify that they are diffusion variables.
( 08356aa )
59519056+bstephens82 at

#55 (Apr 12, 2021, 3:11:09 AM)

Scale normalized sensitivity matrix by parameter values
( e303a20 )
Vince Larson at
Create README file for the benefit of external users.
( f0956b2 )
noreply at
Add data from global runs to dashboard
( de755d3 )
Vince Larson at

#54 (Apr 11, 2021, 3:11:08 AM)

Connect dashboard with analyze_sensitivity_matrix.
( ad27e6d )
Vince Larson at
Move sensitivity matrix files to their own directory.
( 5b5d277 )
Vince Larson at

#53 (Apr 10, 2021, 3:11:07 AM)

Add new driver code that creates a web dashboard
( 445f45d )
Vince Larson at
Performance improvements from chaning loop orderings and redundant operation reduction. All bit-for-bit. larson-group/cam#129
( 38fc413 )
Gunther Huebler at
Reordering dimensions on some arrays. This is bit-for-bit. larson-group/cam#129
( 21e024a )
Gunther Huebler at
Reducing operations. All bit-for-bit. larson-group/cam#129
( b290f70 )
Gunther Huebler at
Adding 2D subroutine versions of some functions to improve performance. This is all bit-for-bit. larson-group/cam#129
( 8737619 )
Gunther Huebler at
Some small cleanup, all just formatting. larson-group/cam#129
( 37af005 )
Gunther Huebler at

#52 (Apr 9, 2021, 3:11:07 AM)

Reordering dimensions of mu, sigma, corr_arrays, and cholesky matrices. This makes the dimension ordering more consistent with similar arrays and should help to reduce computational cost by reducing array slicing. This is all bit-for-bit. larson-group/cam#129
( 4c2742e )
Gunther Huebler at

#51 (Apr 8, 2021, 4:20:35 PM)

Reducing the number of calls to Cholesky_factor. This is bit-for-bit for all standalone cases and our coarse res version of cam. larson-group/cam#129
( c1e00c3 )
Gunther Huebler at

#50 (Apr 8, 2021, 3:11:10 AM)

Moving use statement for one_half inside ifdef, since it is only needed if compilation with MKL functions is enabled.
( 05836e2 )
Gunther Huebler at
Adding new code to create lumped budgets to make comparisons easier between SAM and CLUBB. See #895.
( 458acbf )
59519056+bstephens82 at
Updates to sam-style-budgets option.
( 916cdc3 )
59519056+bstephens82 at
Additional updates to make CLUBB budgets look like SAM budgets.
( b5af806 )
59519056+bstephens82 at
Pyplotgen changes:
( edab867 )
59519056+bstephens82 at
Update VariableGroupBaseBudgetsSamStyle.py
( 921cbbd )
59519056+bstephens82 at
Update VariableGroupBaseBudgetsSamStyle.py
( 59ebf4f )
59519056+bstephens82 at
Updates to address pull request comments.
( 43124ce )
59519056+bstephens82 at
Update VariableGroupBaseBudgetsSamStyle.py
( 9c1470d )
59519056+bstephens82 at

#49 (Apr 7, 2021, 3:11:09 AM)

Adding comments explaining why component_corr_x_hm_n_ip uses corr_array_n_cloud twice. larson-group/cam#129
( afbca95 )
Gunther Huebler at
More loop pushing, all bit-for-bit. larson-group/cam#129
( ef4a681 )
Gunther Huebler at
Adding one_half to use statement. This was a bug preventing compilation when using the ifort compiler with the MKL functions.
( cddbd90 )
Gunther Huebler at

#48 (Apr 6, 2021, 3:11:08 AM)

Fix bug in variable transformation, add linear-solution printout,
( 2e06d8f )
Vince Larson at
Add diagnostic on defaultBiasesOrigApprox
( 6108404 )
noreply at

#47 (Apr 2, 2021, 3:11:10 AM)

Print sensMatrixOrig and omit svdInvrsNormlzdWeighted.
( 7ea516d )
Vince Larson at
More loop pushing. All bit-for-bit. larson-group/cam#129
( b93d8c3 )
Gunther Huebler at

#46 (Apr 1, 2021, 3:11:10 AM)

Test how well SVD solves matrix equation.
( 682869f )
Vince Larson at
More loop pushing. All bit-for-bit. larson-group/cam#129
( cf3bc2a )
Gunther Huebler at

#45 (Mar 31, 2021, 3:11:10 AM)

More pushing loops down. All bit-for-bit. larson-group/cam#129
( 43e54c5 )
Gunther Huebler at

#44 (Mar 30, 2021, 3:11:10 AM)

Eliminate normalization by default parameter values
( 02388e1 )
noreply at
Fix error related to comparing 2 numpy arrays
( acedea7 )
noreply at

#43 (Mar 28, 2021, 3:11:11 AM)

Allow parameters to be transformed from [0,inf] to [-inf,inf].
( 62ecace )
Vince Larson at

#42 (Mar 27, 2021, 3:11:11 AM)

Add 2 more unit tests to test_analyzeSensMatrix.py
( ef13fcd )
Vince Larson at
De-weight metrics that needn't be matched closely.
( fa171f9 )
Vince Larson at
Pushed down some more loops in setup_pdf_params. All bit-for-bit. larson-group/cam#129
( bc4a46d )
Gunther Huebler at

#41 (Mar 25, 2021, 3:11:10 AM)

Print more variables and add assertion checks
( f04e934 )
Vince Larson at
Change "print" to "sys.exit".
( 0547b8c )
Vince Larson at
Pushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129
( ee8146a )
Gunther Huebler at
Broke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129
( 0158f1f )
Gunther Huebler at
Fixed typo bug. larson-group/cam#129
( f388044 )
Gunther Huebler at

#40 (Mar 24, 2021, 3:11:07 AM)

Fix a bug in the calculation of dparamsSoln
( 97ef48b )
Vince Larson at

#39 (Mar 23, 2021, 3:11:09 AM)

Changed surface to sfc in all instances where requested
( 840022e )
rhodesk at
Reverted surface to sfc change where applicable
( 900bc9a )
noreply at
Undid sfc change in stats_sfc_module.F90
( c32a024 )
noreply at
Undid sfc change to grid_class.F90
( 27036f9 )
noreply at
Undid sfc change in numerical_check.F90
( 2872818 )
noreply at
This is a unit test for function analyzeSensMatrix
( 52bc77f )
noreply at
Normalize and transform parameters.
( 8117904 )
Vince Larson at
Add function that plots sensitivity matrix elements
( 9c664a4 )
noreply at
Call function to plot sensitivity matrix
( 059aad6 )
noreply at
Print params and metrics names rather than numbers
( 03427bb )
noreply at

#38 (Mar 20, 2021, 3:11:11 AM)

Add two assertion checks. One checks that the sensitivity
( 4b96ded )
Vince Larson at

#37 (Mar 19, 2021, 3:11:09 AM)

Observations value for global mean and regional mean.
( af0840e )
guozhun at
Fix 3 bugs: change "numMetrics" to "numParams" in invrsBiasesMatrix,
( daa87c6 )
noreply at
Remove inadvertent introduction of pdb.set_trace()
( 5d76a4e )
noreply at

#36 (Mar 18, 2021, 3:11:09 AM)

This commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. In other words, up2_dp1 <---> up2_pr1 and vp2_dp1 <---> vp2_pr1. This makes the terms in these equations more consistent with the terms in the wp2 equation. I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped).
( f3172b2 )
Vince Larson at
Sensitivity matrix code now reads netcdf files by default.
( f0542d4 )
Vince Larson at
Create new driver function, analyzeSensMatrix.
( f7434b8 )
Vince Larson at
Change netcdf package to netCDF4. Now Zhun's
( 37fef27 )
Vince Larson at

#35 (Mar 17, 2021, 3:11:08 AM)

Break sensitivity matrix calculations into functions.
( ea9a055 )
Vince Larson at
I put more sensitivity matrix code into functions,
( 8519687 )
Vince Larson at

#34 (Mar 16, 2021, 3:11:08 AM)

Add sample commands to read in metrics and parameter values
( cc1c7fb )
Vince Larson at

#33 (Mar 14, 2021, 3:11:10 AM)

Initial commit of code to analyze sensitivity to parameter values.
( 8472b44 )
noreply at

#32 (Mar 12, 2021, 3:11:08 AM)

Update run_scm_all.bash to print an all good message. larson_group/sys_admin#689
( b189e6b )
noreply at

#31 (Mar 11, 2021, 3:11:07 AM)

Update README
( 17ed37c )
noreply at

#30 (Mar 10, 2021, 3:11:07 AM)

Adding "em" as a standard output variable in Pyplotgen.
( 2f82f6b )
benjamin.andrew.stephens at
I added an option to improve dry, convecting boundary layers.
( a4ee16b )
Vince Larson at

#29 (Mar 8, 2021, 3:11:07 AM)

I removed a blank line from the README
( a89cd1c )
noreply at

#28 (Mar 7, 2021, 3:11:07 AM)

Changed the variable up2_vp2_factor to up2_sfc_coef in all files
( fe19cce )
rhodesk at

#27 (Mar 4, 2021, 3:11:06 AM)

Adding the Mac test to production.
( 21e91a1 )
pbroels at
Adds restart_silhs_test and edits run_restart_test script
( 9ac15dc )
Vince Larson at
Edits Jenkinsfile for restart_test to work with edits
( 5bd4094 )
Vince Larson at
Adds code to send email on failure to Jenkinsfile
( a7d625e )
Vince Larson at
Making a change to minimize mac test run time.
( 1e78db4 )
noreply at

#26 (Mar 3, 2021, 3:11:07 AM)

Update checkBudget.py
( 026203b )
noreply at

#25 (Mar 2, 2021, 3:11:06 AM)

Turning on wp3 pr_turb term.
( 27433da )
benjamin.andrew.stephens at

#24 (Feb 28, 2021, 3:11:10 AM)

Update README
( 790ba8c )
noreply at

#23 (Feb 27, 2021, 3:11:09 AM)

Added a md file for coding standards
( 2b552ab )
noreply at
Deleted clubb_coding_standards.md
( 8df3784 )
noreply at
Added clubb_coding_standards.md
( 8d49d8d )
noreply at
Fixed missing header identifying authors
( 1d9cb58 )
noreply at
Centered header for coding_standards
( 288825c )
noreply at
Reverted previous changes
( fffa4c5 )
noreply at
Adding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902.
( 94f3fbd )
59519056+bstephens82 at
Made slight formatting changes
( f5c0b57 )
noreply at
Replaced with clubb_coding_standards.md
( abda013 )
noreply at

#22 (Feb 25, 2021, 3:11:06 AM)

To fix the G_unit tuner tests, I increased the maximum iterations
( 4cb48dd )
Vince Larson at

#21 (Feb 24, 2021, 3:11:10 AM)

I changed the tuner's configuration of three cloud cases
( 5bf6e63 )
Vince Larson at
Update VariableGroupSamBudgets.py
( 57ede3b )
noreply at

#20 (Feb 21, 2021, 3:11:08 AM)

Changes error handling in error.f90 for the fire tuner
( b0ef19a )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( 2b062f3 )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( fa7f0df )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( 6d18959 )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( 4aebbf6 )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( 0479b8d )
Vince Larson at
Changes non-success `stop` statements to `error stop`
( 06771f5 )
Vince Larson at
Edits the Jenkinsfile for uninit_var_test to allow it to run
( 34a8c01 )
Vince Larson at

#19 (Feb 20, 2021, 3:11:07 AM)

Adding new Jenkinsfile for the clubb restart test. See #898.
( 46d970e )
benjamin.andrew.stephens at
I removed mentions of "svn" or replaced them with "git".
( 2556cb7 )
noreply at

#18 (Feb 17, 2021, 3:11:08 AM)

Changing dimension order of rand_pool to make consistent with previous reorderings. This is BIT_CHANGING for silhs cases since it changes the order in which random numbers are used. larson-group/cam#129
( 475dc0c )
Gunther Huebler at

#17 (Feb 13, 2021, 3:11:11 AM)

I'm adding BIT_CHANGING here because the word was mistyped
( a8d1a8e )
noreply at
I moved the pyplotgen example commands to the top of the README.
( c2c3d3b )
noreply at

#16 (Feb 12, 2021, 3:11:06 AM)

Revert "Changes error handling within error.f90 for the fire tuner"
( 0485d72 )
isenfireldc at

#15 (Feb 11, 2021, 3:11:07 AM)

Adding email on fail functionaity to all tests.
( da03ca5 )
pbroels at
Changes error handling within error.f90 for the fire tuner
( 612ed86 )
isenfireldc at

#14 (Feb 5, 2021, 3:11:09 AM)

Moving the acc update host directive to after the wait directives in silhs. Since silhs runs with asyncronous kernel calls the update was occasionally happening before some clipping was finished, causing problems in assert_correct_cloud_normal. This is only a problem when compiling with OpenACC enabled, so it should be bit identical for all our tests. larson-group/cam#129
( 91292e2 )
Gunther Huebler at
Reording vertical and subcolumn dimensions in SILHS. This is BIT_CHANING in some cases, seemly due to an outputting error for the precip_rate field, but plotted results are identical. larson-group/cam#129
( 2bc9e52 )
Gunther Huebler at

#13 (Feb 4, 2021, 3:11:09 AM)

I clarified the recipe to do tuning runs.
( 2ab61df )
noreply at

#12 (Feb 2, 2021, 3:11:08 AM)

Changed error_test back, it was already failing when it should
( 53506b0 )
isenfireldc at

#11 (Jan 29, 2021, 3:33:11 AM)

Update parameters_tunable.F90
( 078e790 )
noreply at
Adding restart test file so I don't have to store it locally. I think it works fine, but additional testing couldn't hurt.
( 105dfc8 )
benjamin.andrew.stephens at
Update run_restart_test.bash
( d388c44 )
noreply at

#10 (Jan 28, 2021, 3:33:11 AM)

Updating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term.
( fc11fca )
benjamin.andrew.stephens at
Edited error_test so that it can fail
( a5875dc )
isenfireldc at

#9 (Jan 27, 2021, 3:33:10 AM)

Incorporating Shixuan Zhang's and Chris Vogl's "l_godunov_upwind_wpxp_ta" flag and related code. The flag is set to false by default so results are unaffected. See #902.
( b68d065 )
benjamin.andrew.stephens at
Update configurable_model_flags.in
( 667a723 )
noreply at
Pyplotgen update:
( 97ed99b )
benjamin.andrew.stephens at

#8 (Jan 26, 2021, 3:33:07 AM)

Revert "I'm adding the api entry for read_silhs_parameters, called"
( 785a18e )
bmg2 at
Revert "Fixed a preprocessor command."
( 7ca99a9 )
bmg2 at
Revert "This will allow for a better interface of SILHS parameter"
( 778133a )
bmg2 at
I updated silhs_api_module so that vert_decorr_coef is publically available
( c689c7e )
bmg2 at

#7 (Jan 23, 2021, 3:33:07 AM)

Create linux_x86_64_gfortran_compy.bash
( abd2c7a )
noreply at
Create linux_x86_64_ifort_compy.bash
( f941d86 )
noreply at

#6 (Jan 22, 2021, 3:33:10 AM)

I deleted an unneeded identification file left over from svn.
( 04ce8d4 )
noreply at
Adding the github_nightly_update_scripts to production. Also editted error_test to have more descriptive stage names.
( 4817d3a )
pbroels at
Removing Jenkinsfile from root directory.
( f46edb4 )
pbroels at
This will allow for a better interface of SILHS parameter
( 47032b7 )
bmg2 at
Fixed a preprocessor command.
( b349140 )
bmg2 at
I'm adding the api entry for read_silhs_parameters, called
( f2dc5c2 )
bmg2 at

#5 (Jan 21, 2021, 3:33:09 AM)

I increased the max length of filenames in the tuner
( fcd0874 )
noreply at
Adding check_budget_balance to production.
( 0de67af )
pbroels at
Updating backwards compatibility parameter values because the name of the C5 parameter changed. #901
( 5394962 )
pbroels at
I added comments on parameters for Gunther's esa_driver.
( 54cab0b )
noreply at
This commit renames the wp3 budget term from "bp2" to "pr_turb", and renames the related parameter "C15" to "C_wp3_turb". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files.
( 7387870 )
benjamin.andrew.stephens at