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Started by an SCM change

Started 1 mo 17 days ago

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Clubb JAX (#1351)

clubb_jax/README.md clubb_jax/src/Microphys/KK_microphys/parabolic_cylinder.py clubb_jax/src/CLUBB_core/pdf_params.py clubb_jax/tests/test_pdf_binormal_moments.py clubb_jax/src/CLUBB_core/err_info.py clubb_jax/src/clubb_standalone.py clubb_jax/tests/test_liq_water_path.py clubb_jax/src/Benchmark_cases/arm.py tests/run_python_vs_fortran_cases.py clubb_jax/tests/test_new_pdf_main.py clubb_jax/tests/test_grid_operators.py clubb_jax/tests/test_hydromet_pdf_parameter.py clubb_jax/tests/test_compute_rtp2_from_chi.py clubb_jax/tests/test_remapping_ppm.py clubb_jax/src/CLUBB_core/fill_holes.py clubb_jax/src/CLUBB_core/precipitation_fraction.py clubb_jax/src/Radiation/BUGSrad/bugsrad_planck.py clubb_jax/tests/test_pdf_moment_integrals.py LLM_prompts/port_underlying_fortran_to_other_languages.md clubb_jax/tests/test_hydrostatic.py clubb_jax/tests/test_luhar_3d_driver.py clubb_jax/tests/test_morrison_rates.py clubb_jax/tests/test_soil_vegetation.py clubb_jax/src/Benchmark_cases/diag_ustar_module.py clubb_jax/src/CLUBB_core/new_pdf_main.py clubb_jax/src/Benchmark_cases/arm_3year.py clubb_jax/io/surface.py clubb_jax/tests/test_sponge_damp_xp23.py clubb_jax/src/Microphys/KK_microphys/KK_utilities.py clubb_python_api/clubb_python/derived_types/err_info_converter.py clubb_jax/run_jax_wrapper.sh clubb_jax/tests/test_calc_liquid_cloud_frac_component.py clubb_jax/tests/test_simple_rad_lba.py clubb_jax/src/Microphys/KK_microphys/parameters_KK.py clubb_jax/src/Benchmark_cases/lba.py clubb_jax/src/CLUBB_core/corr_varnce_module.py clubb_jax/src/Microphys/KK_microphys/PDF_integrals_covar.py clubb_jax/src/Radiation/BUGSrad/two_rt_sw.py clubb_jax/src/Radiation/BUGSrad/bugs_swr.py clubb_jax/tests/test_new_pdf.py clubb_jax/tests/test_windm_edsclrm_rhs.py clubb_jax/tests/test_sunray_sw.py clubb_jax/tests/test_sfc_varnce.py clubb_jax/src/Radiation/bugsrad_driver.py clubb_jax/tests/test_spurious_source.py clubb_jax/src/Microphys/ice_dfsn_module.py clubb_jax/src/Radiation/BUGSrad/comscp1.py clubb_jax/tests/test_calc_wpxpyp_pdf.py clubb_jax/requirements.txt clubb_jax/src/CLUBB_core/new_hybrid_pdf.py clubb_jax/src/CLUBB_core/sclr_idx.py clubb_jax/tests/test_mpace_b_lba_tndcy.py clubb_jax/tests/test_compute_gamma_skw.py clubb_jax/src/Benchmark_cases/bomex.py clubb_jax/tests/test_wp2_wp3_lhs_terms.py clubb_jax/tests/test_bivar_NL_mean_eq.py clubb_jax/tests/test_calc_pdf_skewness_diagnostics.py clubb_jax/tests/test_sfc_flux.py clubb_jax/tests/test_precip_fraction.py clubb_jax/tests/test_simple_rad.py clubb_jax/src/CLUBB_core/advance_xp3_module.py clubb_jax/tests/test_no_dead_imports.py clubb_jax/src/CLUBB_core/mixing_length.py clubb_python_api/README.md clubb_jax/src/Benchmark_cases/dycoms2_rf02.py clubb_jax/src/Radiation/BUGSrad/rayle.py clubb_jax/tests/test_calc_wp4_pdf.py clubb_jax/io/namelist.py clubb_jax/tests/test_pressure_sounding_z.py clubb_jax/tests/test_calc_roots.py clubb_jax/tests/test_param_names.py clubb_jax/tests/test_xm_wpxp_terms.py clubb_jax/src/Radiation/rad_lwsw_module.py clubb_jax/src/Benchmark_cases/mpace_a.py clubb_jax/src/Benchmark_cases/cobra.py clubb_jax/tests/test_new_hybrid_pdf_main.py clubb_jax/src/CLUBB_core/advance_windm_edsclrm_module.py clubb_python_api/tests/test_udt_return_contract.py clubb_jax/tests/test_gabls3_night_stability.py clubb_jax/tests/test_no_dead_functions.py clubb_jax/src/CLUBB_core/T_in_K_module.py clubb_jax/src/Radiation/BUGSrad/bugsrad_physconst.py clubb_jax/src/clubb_case_initalization.py clubb_jax/src/CLUBB_core/turbulent_adv_pdf.py clubb_jax/src/CLUBB_core/file_functions.py clubb_python_api/clubb_python/clubb_api.py clubb_jax/src/Benchmark_cases/prescribe_forcings.py LLM_prompts/update_python_api_and_drivers.md clubb_jax/tests/test_calc_xpthvp_terms.py clubb_jax/src/Benchmark_cases/fire.py clubb_jax/tests/test_corr_varnce.py clubb_jax/tests/test_rad_extended_atmosphere.py clubb_jax/src/Benchmark_cases/twp_ice.py clubb_jax/src/CLUBB_core/diagnose_correlations_module.py clubb_jax/tests/test_cloud_drop_sed.py clubb_jax/tests/test_diagnose_upxp.py clubb_jax/src/Benchmark_cases/time_dependent_input.py clubb_jax/src/CLUBB_core/LY93_pdf.py clubb_jax/tests/test_skx_func.py clubb_jax/src/Radiation/BUGSrad/cloud_correlate.py clubb_jax/tests/test_mean_vert_vel_up_down.py clubb_jax/tests/test_saturation.py clubb_jax/tests/test_calc_comp_corrs_binormal.py clubb_jax/tests/test_component_corr_ip.py clubb_jax/src/CLUBB_core/advance_xm_wpxp_module.py clubb_jax/tests/test_denorm_transform_corr.py clubb_jax/JAX_CONVERSION_PLAN.md clubb_python_driver/clubb_case_initalization.py clubb_jax/tests/test_index_mapping.py clubb_jax/tests/test_xm_correction_wpxp_cl.py run_scripts/run_scm.py clubb_jax/src/CLUBB_core/mean_adv.py clubb_jax/tests/test_new_tsdadg_pdf.py clubb_jax/src/Input_fields/hydrostatic_module.py clubb_jax/src/CLUBB_core/clip_explicit.py clubb_jax/src/Microphys/kk_microphys_step.py clubb_jax/tests/test_stats_writer.py clubb_jax/src/Benchmark_cases/rico.py clubb_jax/src/CLUBB_core/new_pdf.py clubb_jax/src/CLUBB_core/__init__.py clubb_jax/clubb_standalone.py clubb_jax/tests/test_adg1_adg2_responder_params.py clubb_jax/src/CLUBB_core/remapping_module.py clubb_jax/tests/test_calc_corr_w_hm_n.py clubb_jax/advance_clubb_to_end.py clubb_jax/src/CLUBB_core/penta_lu_solver.py clubb_jax/tests/test_compute_sigma_sqd_w.py clubb_jax/tests/test_xpyp_term_ta_pdf.py clubb_jax/src/CLUBB_core/model_flags.py clubb_jax/src/Radiation/extended_atmosphere_module.py clubb_jax/src/CLUBB_core/grid_class.py clubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.py clubb_jax/tests/test_differentiability.py clubb_jax/src/Benchmark_cases/ekman.py tests/run_jax_vs_fortran_cases.py clubb_jax/src/Microphys/morrison_microphys_step.py clubb_jax/tests/test_pdf_utilities.py clubb_jax/tests/test_pdf_params_pack_roundtrip.py clubb_jax/src/Radiation/BUGSrad/gases_ckd_data.py clubb_jax/tests/test_quadrivar_covar_const_limits.py clubb_jax/src/advance_clubb_to_end.py clubb_jax/tests/test_cloud_correlate.py jenkins_tests/compare_jax_vs_fortran/Jenkinsfile clubb_jax/src/CLUBB_core/calc_pressure.py clubb_jax/tests/test_NNL_covar_const_vs_MM.py clubb_jax/advance_clubb_core.py clubb_jax/src/Microphys/gfdl_activation.py clubb_jax/tests/test_diagnostic_cache.py clubb_jax/src/CLUBB_core/new_tsdadg_pdf.py clubb_jax/tests/test_unsupported_config_guards.py clubb_jax/src/Benchmark_cases/jun25.py clubb_jax/src/CLUBB_core/Skx_module.py clubb_jax/src/CLUBB_core/numerical_check.py clubb_jax/src/Microphys/morrison_microphys_module.py clubb_jax/tests/test_standalone_jax.py clubb_jax/src/CLUBB_core/stats_netcdf.py clubb_jax/src/CLUBB_core/constants_clubb.py clubb_jax/src/CLUBB_core/setup_clubb_pdf_params.py clubb_jax/src/Radiation/__init__.py clubb_jax/src/CLUBB_core/parameters_tunable.py clubb_jax/tests/test_covar_KK_mixt_frac_linearity.py clubb_jax/radiation.py clubb_jax/tests/test_compute_uv_tndcy.py clubb_jax/tests/test_kk_rico_oracle.py clubb_jax/src/Input_fields/input_reader.py clubb_jax/src/Microphys/KK_microphys/kk_microphys_driver.py clubb_jax/tests/test_pdf_params_init.py .gitignore clubb_jax/src/Benchmark_cases/sfc_flux.py clubb_jax/tests/test_routine_placement.py clubb_jax/src/Microphys/cloud_sed_module.py clubb_jax/tests/test_error_code.py clubb_jax/tests/test_cholesky_corr_mtx_approx.py clubb_jax/tests/test_calc_xprcp_component.py clubb_jax/tests/test_morrison_differentiable.py clubb_jax/src/CLUBB_core/clubb_precision.py clubb_jax/tests/test_solver.py clubb_python_api/clubb_f2py.pyf clubb_jax/src/Input_fields/__init__.py clubb_jax/tests/test_advance_helper_extras.py clubb_python_api/tests/test_call_tree_mono_flux.py clubb_jax/src/CLUBB_core/interpolation.py clubb_jax/tests/test_numerical_check_setters.py clubb_jax/src/CLUBB_core/advance_wp2_wp3_module.py clubb_jax/src/Radiation/BUGSrad/gascon.py clubb_jax/tests/test_kk_upscaled_variances.py clubb_jax/tests/test_radiation_port_structure.py clubb_jax/tests/test_validation_checks.py clubb_jax/src/Benchmark_cases/arm_0003.py clubb_jax/tests/test_calc_ice_cloud_frac_component.py clubb_jax/__init__.py clubb_jax/tests/test_stats_output_time.py clubb_jax/src/Microphys/KK_microphys/PDF_integrals_all_MM.py clubb_jax/tests/test_update_xp2_mc.py src/CLUBB_core/stats_netcdf.F90 clubb_jax/tests/test_bivar_LL_covar_partial_rr_Nr.py clubb_jax/tests/test_quadrivar_NNLL_covar_eq_swap.py clubb_jax/tests/test_penta_solver.py clubb_jax/src/CLUBB_core/index_mapping.py clubb_jax/tests/test_comp_corr_norm.py clubb_jax/src/CLUBB_core/matrix_operations.py clubb_jax/tests/test_cloud_feedback_sfclyr.py clubb_jax/src/CLUBB_core/pos_definite_module.py clubb_jax/clubb_case_initalization.py clubb_jax/src/CLUBB_core/err_info_codes.py clubb_jax/tests/test_clip_covar.py clubb_jax/tests/test_component_precip_frac_specify.py clubb_jax/tests/test_windm_edsclrm_lhs.py clubb_jax/tests/test_radiation_module.py clubb_jax/tests/test_rcm_sat_adj.py clubb_jax/tests/test_smooth_heaviside.py clubb_jax/src/Radiation/cos_solar_zen_module.py clubb_jax/src/CLUBB_core/sigma_sqd_w_module.py clubb_jax/tests/test_adg2_driver.py clubb_jax/src/CLUBB_core/jax_stats.py clubb_jax/src/Benchmark_cases/neutral_case.py clubb_jax/tests/test_clip_skewness.py clubb_jax/src/Radiation/BUGSrad/cloudg.py clubb_jax/src/Benchmark_cases/atex_long.py clubb_jax/tests/test_trivar_NLL_mean_eq.py clubb_jax/src/Radiation/BUGSrad/bugs_lwr.py clubb_jax/tests/test_hydrometeor_mixed_moments.py clubb_jax/tests/test_calculate_thvm.py clubb_jax/src/CLUBB_core/config_flags.py clubb_jax/io/__init__.py clubb_jax/src/Microphys/KK_microphys/KK_local_means.py clubb_jax/src/Microphys/microphys_driver.py clubb_jax/tests/test_compute_xp3.py clubb_jax/src/Radiation/simple_rad_module.py clubb_jax/src/Benchmark_cases/gabls3.py clubb_jax/tests/test_T_in_K.py clubb_jax/src/Microphys/__init__.py clubb_jax/tests/test_kk_autoconversion.py clubb_jax/src/Benchmark_cases/dycoms2_rf01.py clubb_jax/src/Microphys/KK_microphys/KK_Nrm_tendencies.py clubb_jax/tests/test_bivar_LL_mean_const.py clubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.py clubb_jax/src/CLUBB_core/matrix_solver_wrapper.py clubb_jax/tests/test_kk_local_means.py clubb_jax/tests/test_diagnose_correlations.py clubb_jax/src/CLUBB_core/tridiag_lu_solver.py clubb_python_api/clubb_python/derived_types/err_info.py clubb_jax/src/Input_fields/input_names.py clubb_jax/src/Benchmark_cases/mpace_b.py clubb_jax/src/CLUBB_core/advance_xp2_xpyp_module.py clubb_jax/tests/test_advance_xp3_simplified.py clubb_jax/tests/test_calc_wp3_on_wp2.py clubb_jax/src/Radiation/BUGSrad/two_rt_lw.py clubb_jax/tests/test_nov11.py clubb_jax/src/CLUBB_core/calendar.py clubb_jax/src/CLUBB_core/advance_helper_module.py clubb_jax/tests/test_diffusion.py clubb_jax/src/Input_fields/surface.py clubb_jax/tests/test_fill_holes_mean.py clubb_jax/tests/test_lba_sfclyr.py clubb_jax/tests/test_max_cubic_root.py clubb_jax/src/Microphys/KK_microphys/KK_upscaled_means.py clubb_python_api/clubb_python/CLUBB_core/stats_netcdf.py clubb_jax/src/Microphys/KK_microphys/__init__.py clubb_jax/tests/test_calendar.py clubb_jax/tests/test_mixed_moment_pdf_integrals.py clubb_jax/src/Benchmark_cases/wangara.py clubb_jax/src/CLUBB_core/diffusion.py clubb_jax/tests/test_fill_holes_global.py clubb_jax/tests/test_hydrometp2_zt.py clubb_jax/tests/test_mirror_lower_triangular.py clubb_jax/tests/test_fill_holes_sliding_window.py clubb_jax/tests/test_pvertinterp.py clubb_jax/tests/test_w_up_in_cloud.py clubb_jax/src/Radiation/radiation_module.py clubb_jax/tests/test_luhar_params.py clubb_python_api/f2py_fortran_wrappers/error_code_wrapper.F90 clubb_jax/tests/test_f2py_advance_xm_wpxp.py clubb_jax/src/Radiation/BUGSrad/gases_ckd.py clubb_jax/tests/test_pdf_integrals_all_mm.py clubb_jax/src/CLUBB_core/advance_clubb_core_module.py clubb_jax/src/CLUBB_core/pdf_closure_module.py clubb_python_api/clubb_python/CLUBB_core/error_code.py clubb_jax/src/Benchmark_cases/spec_hum_to_mixing_ratio.py clubb_jax/tests/test_gfdl_activation.py clubb_jax/src/CLUBB_core/stats_clubb_utilities.py clubb_jax/src/Benchmark_cases/astex_a209.py clubb_jax/src/CLUBB_core/new_hybrid_pdf_main.py clubb_jax/tests/test_coefs_semiimpl.py clubb_jax/tests/test_cobra_sfclyr.py clubb_jax/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.py clubb_jax/tests/test_cos_solar_zen.py clubb_jax/tests/test_ly93_pdf.py clubb_python_api/JAX_INTEROPERABILITY_PROPOSAL.md clubb_jax/src/Benchmark_cases/gabls2.py clubb_jax/io/sounding.py clubb_jax/tests/test_calc_corr_norm_cholesky.py clubb_jax/tests/test_wp2_wp3_terms.py clubb_jax/src/Radiation/parameters_radiation.py clubb_jax/tests/test_Nc_Ncn_eqns.py clubb_jax/src/CLUBB_core/Nc_Ncn_eqns.py clubb_jax/src/CLUBB_core/parameter_indices.py clubb_jax/tests/test_cholesky_factor.py clubb_jax/tests/test_time_select.py clubb_jax/tests/test_mono_flux_limiter.py clubb_jax/tests/test_penta_faithful.py clubb_jax/tests/test_responder_params.py clubb_jax/tests/test_trivar_NNL_covar_eq.py clubb_python_driver/advance_clubb_core.py clubb_jax/src/Radiation/BUGSrad/newexp.py clubb_jax/src/Benchmark_cases/atex.py clubb_jax/src/CLUBB_core/tracer_numpy.py clubb_jax/src/Benchmark_cases/gabls3_night.py clubb_jax/tests/test_interpolation.py clubb_jax/tests/test_NNL_covar_const_limits.py clubb_jax/tests/test_inverse_hydrostatic.py clubb_jax/src/CLUBB_core/mono_flux_limiter.py clubb_jax/src/CLUBB_core/sponge_layer_damping.py clubb_jax/src/CLUBB_core/calc_roots.py clubb_jax/src/Microphys/Morrison_microphys/__init__.py LLM_prompts/SHORTCUTS.md clubb_jax/src/Benchmark_cases/nov11.py clubb_jax/tests/test_spec_hum_to_mixing_ratio.py clubb_jax/tests/test_pos_definite.py clubb_jax/src/Microphys/mixed_moment_PDF_integrals.py clubb_jax/tests/test_limits_f_x_responder.py clubb_jax/tests/test_xpyp_term_ta_godunov.py clubb_python_api/tests/test_stats.py clubb_jax/src/CLUBB_core/stats_metadata.py clubb_jax/tests/test_bivar_LL_covar_partial.py clubb_jax/src/Benchmark_cases/cloud_feedback.py clubb_jax/src/Benchmark_cases/arm_97.py clubb_jax/tests/test_KK_Nrm_tendencies.py clubb_jax/src/CLUBB_core/nu_vert_res_dep.py clubb_jax/tests/test_constants.py clubb_jax/tests/test_clip_variance.py clubb_python_api/clubb_python/CLUBB_core/clip_explicit.py clubb_jax/tests/test_xp2_xpyp_terms.py clubb_jax/src/CLUBB_core/error_code.py clubb_jax/src/CLUBB_core/pdf_utilities.py clubb_jax/tests/test_ice_dfsn.py clubb_jax/tests/test_jit_compile.py clubb_jax/tests/test_silhs_surface_schemes.py clubb_jax/src/Radiation/BUGSrad/bugs_rad.py clubb_jax/tests/test_mixing_length.py clubb_python_api/tests/argument_list_enforcer/argument_contract_audit.py clubb_jax/src/Microphys/KK_microphys_module.py clubb_jax/io/grid_file.py clubb_jax/src/Radiation/BUGSrad/__init__.py clubb_jax/clubb_constants.py clubb_jax/src/CLUBB_core/sfc_varnce_module.py clubb_jax/tests/test_setter_var_params.py clubb_jax/src/Microphys/KK_microphys/KK_upscaled_covariances.py clubb_jax/src/Microphys/Morrison_microphys/module_mp_graupel.py clubb_jax/tests/test_calculate_w_responder_params.py clubb_jax/src/Microphys/KK_microphys/PDF_integrals_means.py clubb_jax/src/Radiation/soil_vegetation.py clubb_jax/tests/test_NNL_covar_vs_MM.py clubb_jax/tests/test_morrison_special.py clubb_jax/src/Input_fields/namelist.py clubb_jax/tests/test_read_surface_var_for_bc.py clubb_jax/tests/test_transform_pdf_chi_eta_component.py clubb_jax/tests/test_pressure_coord_forcing.py clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py clubb_jax/src/__init__.py clubb_jax/requirements-cuda13.txt clubb_python_api/tests/test_init_sequence.py clubb_jax/src/Input_fields/grid_file.py clubb_jax/src/Microphys/KK_microphys/KK_upscaled_variances.py clubb_jax/tests/test_remapping_module.py clubb_jax/tests/test_calc_comp_mu_sigma_hm.py clubb_jax/src/CLUBB_core/saturation.py clubb_jax/tests/test_set_sfc_value_of_flux_profiles.py clubb_jax/tests/test_binormal_moments.py clubb_jax/tests/test_bugsrad.py clubb_jax/src/Input_fields/sounding.py clubb_jax/src/Radiation/BUGSrad/comscp2.py clubb_jax/src/Benchmark_cases/__init__.py clubb_jax/tests/test_calc_pdf_chi_mean_var.py clubb_jax/tests/test_config_flags_complete.py clubb_jax/src/Microphys/advance_microphys_module.py clubb_jax/tests/test_forcing_port_structure.py clubb_jax/src/CLUBB_core/hydromet_pdf_parameter_module.py clubb_jax/tests/test_mean_adv.py clubb_jax/tests/test_close_luhar_pdf.py

noreply at 1:15 PM 9/2/26