Started by user Vince Larson Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 2f3a8a9c995174067f2a6687aff1fa96de2452e3 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 2f3a8a9c995174067f2a6687aff1fa96de2452e3 # timeout=10 Commit message: "Add l_smooth_Heaviside_tau_wpxp to smooth discontinuity in invrs_tau_wpxp_zm" > git rev-list --no-walk 6dff441959e8cdb1eb5c52576309eb27f4f619c1 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 842 : write(iunit,*) "l_fix_w_chi_eta_correlations = ", clubb_config_flags%l_fix_w_chi_eta_correlations CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 859 : write(iunit,*) "l_use_tke_in_wp3_pr_turb_term = ", clubb_config_flags%l_use_tke_in_wp3_pr_turb_term CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/model_flags.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/2f3a8a9c995174067f2a6687aff1fa96de2452e3. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_6dff441959e8cdb1eb5c52576309eb27f4f619c1. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm_97 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing atex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf02_ds netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing gabls3_night netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing lba netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing rico netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing twp_ice netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (6dff441959e8cdb1eb5c52576309eb27f4f619c1) 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Checking Commit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Running: final commit to check, not labelled BIT_CHANGING Checking out 2f3a8a9c995174067f2a6687aff1fa96de2452e3 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 6dff441959e8cdb1eb5c52576309eb27f4f619c1 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 2f3a8a9c995174067f2a6687aff1fa96de2452e3 latest_revision_validated_6dff441959e8cdb1eb5c52576309eb27f4f619c1' =============================== Test Results =============================== Commit Range Checked = 6dff441959e8cdb1eb5c52576309eb27f4f619c1...2f3a8a9c995174067f2a6687aff1fa96de2452e3 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 2f3a8a9c995174067f2a6687aff1fa96de2452e3 =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 RENAMING 2f3a8a9c995174067f2a6687aff1fa96de2452e3 to latest_revision_validated_2f3a8a9c995174067f2a6687aff1fa96de2452e3 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS