Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 6dff441959e8cdb1eb5c52576309eb27f4f619c1 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 6dff441959e8cdb1eb5c52576309eb27f4f619c1 # timeout=10 Commit message: "Adjusting the value of C_invrs_tau_shear from 0.15 to 0.16 so that CLUBB (particularly the MC3E case) completes successfully for all compiler tests." > git rev-list --no-walk e000e918d50566e48e2e35d43e7c7ad76a0e38cd # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/ee117e4e991e6afcc9327cf8890439e1f90f86af. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_e000e918d50566e48e2e35d43e7c7ad76a0e38cd. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm_97 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing atex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf02_ds netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing gabls3_night netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing lba netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing rico netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing twp_ice netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2520:32: 2520 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:327:13: 327 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/6dff441959e8cdb1eb5c52576309eb27f4f619c1. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/ee117e4e991e6afcc9327cf8890439e1f90f86af. Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing arm_97 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing atex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing bomex netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf01 netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing dycoms2_rf02_ds netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing gabls3_night netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing lba netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing rico netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing twp_ice netCDF (*.nc) files Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Traceback (most recent call last): File "diff_netcdf_outputs.py", line 5, in <module> import netCDF4 ImportError: No module named netCDF4 Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (e000e918d50566e48e2e35d43e7c7ad76a0e38cd) ee117e4e991e6afcc9327cf8890439e1f90f86af 6dff441959e8cdb1eb5c52576309eb27f4f619c1 Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: ee117e4e991e6afcc9327cf8890439e1f90f86af Parsing message from commit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 Found: BIT_CHANGING Checking Commit: ee117e4e991e6afcc9327cf8890439e1f90f86af Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 Checking out ee117e4e991e6afcc9327cf8890439e1f90f86af Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from e000e918d50566e48e2e35d43e7c7ad76a0e38cd already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash ee117e4e991e6afcc9327cf8890439e1f90f86af latest_revision_validated_e000e918d50566e48e2e35d43e7c7ad76a0e38cd' Checking out 6dff441959e8cdb1eb5c52576309eb27f4f619c1 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from ee117e4e991e6afcc9327cf8890439e1f90f86af already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 6dff441959e8cdb1eb5c52576309eb27f4f619c1 ee117e4e991e6afcc9327cf8890439e1f90f86af' [33m WARNING: commit '6dff441959e8cdb1eb5c52576309eb27f4f619c1' was supposed to be BIT_CHANGING, but is not.[0m =============================== Test Results =============================== Commit Range Checked = e000e918d50566e48e2e35d43e7c7ad76a0e38cd...6dff441959e8cdb1eb5c52576309eb27f4f619c1 No new Unresolved commits found. Fake BIT_CHANGING Commits: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 6dff441959e8cdb1eb5c52576309eb27f4f619c1 =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: e000e918d50566e48e2e35d43e7c7ad76a0e38cd REMOVING: ee117e4e991e6afcc9327cf8890439e1f90f86af RENAMING 6dff441959e8cdb1eb5c52576309eb27f4f619c1 to latest_revision_validated_6dff441959e8cdb1eb5c52576309eb27f4f619c1 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS