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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
pdf_implicit_coefs_terms%coef_wp2up_implicit =
pdf_implicit_coefs_terms%term_wp2up_explicit =
pdf_implicit_coefs_terms%coef_wp2vp_implicit =
pdf_implicit_coefs_terms%term_wp2vp_explicit =
Intent(inout)
rtm = 9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.450000000000000E-003
9.450000000000000E-003 9.450000000000000E-003 9.316219010590003E-003
8.546751735579245E-003 7.140885431088669E-003 5.730506216067530E-003
4.959512129299518E-003 4.825186993647962E-003 4.770000000000000E-003
4.716022227780776E-003 4.660000000000000E-003 4.610000000000000E-003
4.556954245307191E-003 4.508667540353867E-003 4.459759007115590E-003
4.410000000000000E-003 4.360000000000000E-003 4.312374010846654E-003
4.270000000000000E-003 4.220000000000000E-003 4.180000000000000E-003
4.139492481441124E-003 4.090000000000000E-003 4.050000000000000E-003
4.010000000000000E-003 3.970000000000000E-003 3.930000000000000E-003
3.894131059784144E-003 3.860000000000000E-003 3.820000000000000E-003
3.785101803701198E-003 3.750000000000000E-003 3.710000000000000E-003
3.680000000000000E-003 3.646542156454307E-003 3.610000000000000E-003
3.580000000000000E-003 3.550000000000000E-003 3.520000000000000E-003
3.490000000000000E-003 3.460000000000000E-003 3.430000000000000E-003
3.400483430285275E-003 3.372473298718733E-003 3.350000000000000E-003
3.320000000000000E-003 3.291969845211141E-003 3.270000000000000E-003
3.246291197501439E-003 3.220000000000000E-003 3.199659106525715E-003
3.170000000000000E-003 3.150000000000000E-003 3.129335146792353E-003
3.100000000000000E-003 3.080000000000000E-003 3.060000000000000E-003
3.040000000000000E-003 3.020000000000000E-003 3.000000000000000E-003
2.980000000000000E-003 2.960000000000000E-003 2.940000000000000E-003
2.920000000000000E-003 2.900000000000000E-003 2.889075445834069E-003
2.870000000000000E-003 2.850000000000000E-003 2.830031451723794E-003
2.820000000000000E-003 2.800000000000000E-003 2.784678462370640E-003
2.770000000000000E-003 2.753572291672273E-003 2.740000000000000E-003
2.722537633509804E-003 2.710000000000000E-003 2.700000000000000E-003
2.680000000000000E-003 2.670000000000000E-003 2.660000000000000E-003
2.640000000000000E-003 2.630000000000000E-003 2.620000000000000E-003
2.605761815374918E-003
wprtp = 3.074380165289256E-005 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
thlm = 288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300000000000 288.300000000000
288.300000000000 288.300004312275 288.582794392573
290.217215719318 293.203687538905 296.189876653393
297.824485276456 298.111625569418 298.419939961773
298.684037872093 298.914864632529 299.121280656015
299.308875150412 299.481395282122 299.641587092017
299.791412965513 299.932428132227 300.065796864175
300.192498785132 300.313299555223 300.428830511679
300.539659051911 300.646210000000 300.748905076268
300.848036395248 300.943922463357 301.036815136973
301.126924150722 301.214467240267 301.299604468786
301.382508444106 301.463299768420 301.542132143659
301.619105408452 301.694334639813 301.767895915582
301.839905444294 301.910425806157 301.979534237018
302.047299379840 302.113785204383 302.179052743170
302.243158695375 302.306146501096 302.368062210934
302.428958615054 302.488874255294 302.547842707943
302.605908232482 302.663093939283 302.719439383742
302.774980384453 302.829733195408 302.883735735418
302.937007662028 302.989569173032 303.041445257452
303.092672644597 303.143253386406 303.193213580752
303.242572879356 303.291346342270 303.339551716641
303.387206881290 303.434322515198 303.480926416909
303.527017485644 303.572615994179 303.617741783210
303.662394702797 303.706584325954 303.750338382078
303.793657271922 303.836555659138 303.879041910802
303.921125339432 303.962804667034 304.004112369743
304.045038520661 304.085606731795 304.125805483142
304.165659399857 304.205161024957 304.244331278864
304.283174756423
wpthlp = 1.316167547141626E-002 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
um = 3.02150613489726 3.06450372013652 3.10750143344710
3.15049914675768 3.19350272168575 3.23650043182847
3.27950200791639 3.32249959841054 3.36550446089228
3.40850473170571 3.45150430002923 3.49449660356170
3.53749908617207 3.58049787509763 3.62349813809797
3.66649867856391 3.70949930851407 3.75250020470804
3.79549672496245 3.83849908560311 3.88149519455253
3.92450560430521 3.96750171206226 4.01050212062257
4.05349822957198 4.09649433852140 4.13949672966815
4.18250420724368 4.22549743687442 4.26850314928363
4.31149609688969 4.35450098084241 4.39749961572582
4.44049826327319 4.48349797567326 4.52649910235920
4.56950022010692 4.61250011208426 4.65549541189299
4.69849764052166 4.74150252362078 4.78450428233664
4.82749318129188 4.87049572357560 4.91349867974173
4.95650122861456 4.99950078251110 5.04250180240147
5.08550474521795 5.12849956521831 5.17149756769417
5.21450120302686 5.25750345206792 5.30050455340025
5.34350399540247 5.38650298538315 5.42950266034199
5.47250000000000 5.51550159790966 5.55850305215799
5.60149633513294 5.64449935846979 5.68750274145938
5.73049817596023 5.77349959104071 5.81650089813062
5.85950186197387 5.90249733792831 5.94549951674190
5.98850113971063 6.03149815940515 6.07449531174538
6.11750308221678 6.16050020771567 6.20349789694034
6.24649496568348 6.28949862931709 6.33250315167892
6.37549882940965 6.41849950124688 6.46150001641719
6.50450587160282 6.54750198254364 6.59049803427691
6.63349800587625 6.67650486013544 6.71950244633850
6.76250057545633 6.80549916937459 6.84849552974911
6.89150086756031 6.93449681101576 6.97750068132198
7.02049950429091 7.06349998294919 7.10649799688397
7.14949476740103 7.19250000000000 7.23549914427099
7.27849855203620 7.32150511790925 7.36449687498541
7.40750106821896 7.45049516388353 7.49349778280543
7.53650484151223 7.57949633484163 7.62250276018100
7.66549436358194 7.70850108188904 7.75150164826494
7.79450153788484 7.83750461450479 7.88050277837838
7.92350120000000 7.96649962162162 8.00949793387505
8.05250076756757 8.09549918918919 8.13849761081081
8.18149571786990 8.22449845684683 8.26749657255522
8.31049826455983 8.35349960499224 8.39650042673671
8.43950194941582 8.48250372675772 8.52550345639327
8.56850049519825 8.61149854314013 8.65449760690020
8.69750162631077 8.74050021127133 8.78350196604463
8.82650425146107 8.86950020258661 8.91249667169001
8.95549890846686 8.99850067601866 9.04150309510041
9.08449507294686 9.12749621097056 9.17049818039273
9.21350020629854 9.25650241945779 9.29950171194109
9.34249640219774 9.38549974663662 9.42850208908662
9.47149839195750 9.51449794214278 9.55750118290525
9.60050391312031 9.64349735015529 9.68649934356594
9.72950261348842 9.77249438379765 9.81549806055610
9.85850155940508
upwp = -2.068544965659917E-002 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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vm = -8.97199788791151 -8.91599976109215 -8.86000146757679
-8.80399857901068 -8.74799999135384 -8.69200399137688
-8.63599539354729 -8.57999781170855 -8.52399752527692
-8.46799483153397 -8.41199653159258 -8.35600414538534
-8.30000067154134 -8.24400105708245 -8.18799887949260
-8.13199656878163 -8.07599408106727 -8.02000243614896
-7.96400559303409 -7.90800268482490 -7.85200155642023
-7.79599474948530 -7.74000438669664 -7.68399696498054
-7.62799902065281 -7.57200485793234 -7.51600375160726
-7.45999590990991 -7.40400108108108 -7.34800092585401
-7.29200178068930 -7.23600125791137 -7.17999551444218
-7.12400495542373 -7.06800135551480 -7.01200426148650
-6.95600688202328 -6.90000258821843 -6.84400301169721
-6.78800287895240 -6.73199611584490 -6.67599872702854
-6.62000650802849 -6.56400181271355 -6.50799515451357
-6.45199960359344 -6.39599766658226 -6.34000381949881
-6.28399746699705 -6.22799522334603 -6.17199669905717
-6.11599664211319 -6.05999689506617 -6.00399759763702
-5.94799854652099 -5.89199888114137 -5.83599782378355
-5.78000000000000 -5.72400439989657 -5.66799865858456
-5.61200281260045 -5.55599689848073 -5.50000095276190
-5.44399501198042 -5.38799895386096 -5.33199452485705
-5.27599757003312 -5.21999805517597 -5.16399680563075
-5.10800548771643 -5.05200404921530 -4.99600243790969
-4.94000057955514 -4.88399844499427 -4.82799989441900
-4.77200375192876 -4.71600133793398 -4.66000335411471
-4.60400128605748 -4.54799528678304 -4.49199905236908
-4.43599717545378 -4.38000098503741 -4.32400475062344
-4.26799838100281 -4.21199668329177 -4.15599851650787
-4.09999948074613 -4.04399949650052 -3.98800327402135
-3.93199716488731 -3.87600105575326 -3.81999494661922
-3.76399883748517 -3.70799161367812 -3.65200237007481
-3.59600618948931 -3.54000000000000 -3.48399452488688
-3.42800538106774 -3.37199901647773 -3.31599929864253
-3.25999702955688 -3.20400394796380 -3.14800407239819
-3.09199859728507 -3.03599872171946 -2.98000330657698
-2.92400337104072 -2.86800040000000 -2.81200160000000
-2.75600283533066 -2.69999806453899 -2.64399960000000
-2.58800080000000 -2.53200200000000 -2.47600334234353
-2.41999880000000 -2.36400000000000 -2.30800120000000
-2.25200280940550 -2.19599970661003 -2.14000260737574
-2.08399515481130 -2.02799770881049 -1.97200072519038
-1.91600398693738 -1.85999759689878 -1.80399873706004
-1.74800174260388 -1.69200349360434 -1.63600552073247
-1.57999695069715 -1.52400000194682 -1.46799794313589
-1.41199907978889 -1.35600424067623 -1.29999819757777
-1.24400273816326 -1.18799653702373 -1.13200171613827
-1.07600537496706 -1.02000046774795 -0.964004879146460
-0.907998899879041 -0.852003002622308 -0.795999124369359
-0.740002576922925 -0.683999154599351 -0.627995847892670
-0.572002923674663 -0.515999219428352 -0.459997327643027
-0.404002307681728 -0.347997532677515 -0.292002115135504
-0.236001343419721 -0.179997680235046 -0.124004889345354
-6.800095207262653E-002
vpwp = 5.897764129315703E-002 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
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0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not av
ailable. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90
to 90 degrees, Longitude range from -180 to 180 degrees
Error calling advance_xm_wpxp in advance_clubb_core
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not av
ailable. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90
to 90 degrees, Longitude range from -180 to 180 degrees
Fatal error advance_clubb_core in API module
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not av
ailable. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90
to 90 degrees, Longitude range from -180 to 180 degrees
Fatal error in advance_clubb_core, check your parameter values and timestep
Writing timing results to: /home/jenkins/workspace/clubb_plots@2/output/solver_compare/bicgstab_output/dycoms2_rf02_ds.timing
Fatal error in clubb, check your parameter values and timestep
--------------------------------------------------
run_scm.py total runtime: 0.59 s
--------------------------------------------------
overlie seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
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mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
overlie is back online
mitch is back online
overlie seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
overlie is back online
mitch is back online
mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
overlie seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- atex
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- arm
COMPLETE -- wangara
COMPLETE -- mpace_b
COMPLETE -- rico
COMPLETE -- cgils_s6
COMPLETE -- cgils_s11
COMPLETE -- cgils_s12
COMPLETE -- gabls3_night
COMPLETE -- lba
COMPLETE -- twp_ice
COMPLETE -- arm_97
=================== Runs Complete ===================
dycoms2_rf01 failure
dycoms2_rf02_ds failure
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mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
mitch is back online
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mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
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[Pipeline] }
ERROR: script returned exit code 1
[Pipeline] // catchError
[Pipeline] sh
+ rm output/solver_compare/bicgstab_output/dycoms2_rf02_ds_log output/solver_compare/bicgstab_output/dycoms2_rf02_ds_setup.txt output/solver_compare/bicgstab_output/dycoms2_rf02_ds_stats.nc
[Pipeline] sh
+ rm output/solver_compare/bicgstab_output/dycoms2_rf01_fixed_sst.in output/solver_compare/bicgstab_output/dycoms2_rf01_fixed_sst_log output/solver_compare/bicgstab_output/dycoms2_rf01_fixed_sst_setup.txt output/solver_compare/bicgstab_output/dycoms2_rf01_fixed_sst_stats.nc output/solver_compare/bicgstab_output/dycoms2_rf01_fixed_sst.timing output/solver_compare/bicgstab_output/dycoms2_rf01_log output/solver_compare/bicgstab_output/dycoms2_rf01_setup.txt output/solver_compare/bicgstab_output/dycoms2_rf01_stats.nc
[Pipeline] sh
+ python postprocessing/pyplotgen/pyplotgen.py -les -clubb output/solver_compare/lapack_output output/solver_compare/custom_lu_output output/solver_compare/bicgstab_output -output_dir output/c47faf3_solver
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots@2/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots@2/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots@2/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 1.17s
Building fpdf==1.7.2
Downloading pygments (1.2MiB)
Downloading pandas (10.3MiB)
Downloading pillow (6.6MiB)
Downloading matplotlib (8.4MiB)
Downloading meson (1.1MiB)
Downloading netcdf4 (10.1MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading numpy (16.0MiB)
Downloading fonttools (5.2MiB)
Downloading cftime (1.6MiB)
Downloading kiwisolver (1.4MiB)
Downloaded kiwisolver
Downloaded cftime
Built fpdf==1.7.2
Downloaded meson
Downloaded pygments
Downloaded pillow
Downloaded fonttools
Downloaded matplotlib
Downloaded netcdf4
Downloaded numpy
Downloaded opencv-python-headless
Downloaded pandas
Prepared 25 packages in 1.73s
Installed 25 packages in 38ms
+ certifi==2026.7.22
+ cftime==1.6.6.1
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.67.0
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.7.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots@2/.venv-python/bin/python
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mitch is back online
mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
overlie seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
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/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots@2/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots@2/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
----------
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COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- dycoms2_rf01
COMPLETE -- arm
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_do
COMPLETE -- fire
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- gabls3_night
COMPLETE -- neutral
COMPLETE -- jun25_altocu
COMPLETE -- gabls2
COMPLETE -- lba
COMPLETE -- nov11_altocu
COMPLETE -- wangara
COMPLETE -- rico_silhs
COMPLETE -- rico
=================== Runs Complete ===================
All cases ran to completion.
+ python3 postprocessing/pyplotgen/pyplotgen.py -les -clubb output/jax_vs_fortran/fortran_c47faf3 output/jax_vs_fortran/jax_c47faf3 -output_dir output/c47faf3_jax_vs_fortran
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots/.venv-python
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots/.venv-python
Using Python 3.12.13 environment at: .venv-python
Resolved 25 packages in 1.64s
Building fpdf==1.7.2
Downloading meson (1.1MiB)
Downloading fonttools (5.2MiB)
Downloading pillow (6.6MiB)
Downloading pandas (10.3MiB)
Downloading pygments (1.2MiB)
Downloading numpy (16.0MiB)
Downloading kiwisolver (1.4MiB)
Downloading cftime (1.6MiB)
Downloading netcdf4 (10.1MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading matplotlib (8.4MiB)
Built fpdf==1.7.2
Downloaded kiwisolver
Downloaded cftime
Downloaded meson
Downloaded pillow
Downloaded pygments
Downloaded fonttools
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded opencv-python-headless
Downloaded pandas
Prepared 25 packages in 2.47s
Installed 25 packages in 49ms
+ certifi==2026.7.22
+ cftime==1.6.6.1
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.67.0
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.7.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
----------
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-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CLEX9_OCT14: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DO: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
DYCOMS2_RF02_SO: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
GABLS2: SUCCESS --> Images found.
GABLS2_NIGHTLY: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
JUN25_ALTOCU: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
NEUTRAL: SUCCESS --> Images found.
NOV11_ALTOCU: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
RICO_SILHS: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots/output/c47faf3_jax_vs_fortran/index.html with a web browser
Pyplotgen ran in 35 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-17 06:01:50.176 proc_id: 3953642 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/clubb_jax_plots/master'
[Pipeline] sh
+ scp -r output/c47faf3_jax_vs_fortran carson:/home/pub/web_plots/clubb_jax_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/clubb_jax_plots/'
/home/pub/web_plots/clubb_jax_plots/ updated successfully.
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // parallel
[Pipeline] }
[Pipeline] // stage
[Pipeline] End of Pipeline
Finished: ABORTED
