Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 4d88fc65090fc186ee942d5247fbb43ddfa67a82 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4d88fc65090fc186ee942d5247fbb43ddfa67a82 # timeout=10 Commit message: "Remove clipping from a3_coef." > git rev-list --no-walk 01902a482d8d51667174e18551fad475b57dc98c # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2518:32: 2518 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: 132 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13: 323 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/01902a482d8d51667174e18551fad475b57dc98c. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/01902a482d8d51667174e18551fad475b57dc98c. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: 132 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/4d88fc65090fc186ee942d5247fbb43ddfa67a82. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/01902a482d8d51667174e18551fad475b57dc98c. Diffing arm netCDF (*.nc) files *** Differences detected in arm_zt.nc! *** *** Differences detected in arm_zm.nc! *** *** Differences detected in arm_sfc.nc! *** Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files *** Differences detected in atex_zt.nc! *** *** Differences detected in atex_zm.nc! *** *** Differences detected in atex_sfc.nc! *** Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** *** Differences detected in bomex_zm.nc! *** *** Differences detected in bomex_sfc.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** *** Differences detected in dycoms2_rf01_zm.nc! *** *** Differences detected in dycoms2_rf01_sfc.nc! *** Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files *** Differences detected in gabls3_night_zt.nc! *** *** Differences detected in gabls3_night_zm.nc! *** *** Differences detected in gabls3_night_sfc.nc! *** Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files *** Differences detected in wangara_zt.nc! *** *** Differences detected in wangara_zm.nc! *** *** Differences detected in wangara_sfc.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (01902a482d8d51667174e18551fad475b57dc98c) 4d88fc65090fc186ee942d5247fbb43ddfa67a82 Making list from 'UnresolvedCommits': - 1c59a5018700023f704a46b68ad581445427d51f - e33002f85d35ee72f9b155437f36e9c103765cc3 - f7cd1d8ccc310129bfb3ceb243b0c47284eaccf5 - 202f78110b0f343f565b8ac1ea633ded7b27ee11 - df3b263c7525b030ed469116534560eb74ae8ddf Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 4d88fc65090fc186ee942d5247fbb43ddfa67a82 Found: BIT_CHANGING Checking Commit: 4d88fc65090fc186ee942d5247fbb43ddfa67a82 Checking out 01902a482d8d51667174e18551fad475b57dc98c Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Output from 01902a482d8d51667174e18551fad475b57dc98c already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 01902a482d8d51667174e18551fad475b57dc98c 01902a482d8d51667174e18551fad475b57dc98c' Checking out 4d88fc65090fc186ee942d5247fbb43ddfa67a82 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Output from 01902a482d8d51667174e18551fad475b57dc98c already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 4d88fc65090fc186ee942d5247fbb43ddfa67a82 01902a482d8d51667174e18551fad475b57dc98c' Commit '4d88fc65090fc186ee942d5247fbb43ddfa67a82' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 01902a482d8d51667174e18551fad475b57dc98c...4d88fc65090fc186ee942d5247fbb43ddfa67a82 No new Unresolved commits found. No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 1c59a5018700023f704a46b68ad581445427d51f e33002f85d35ee72f9b155437f36e9c103765cc3 f7cd1d8ccc310129bfb3ceb243b0c47284eaccf5 202f78110b0f343f565b8ac1ea633ded7b27ee11 df3b263c7525b030ed469116534560eb74ae8ddf =============================== Updating Config File =============================== Saving into UnresolvedCommits: 1c59a5018700023f704a46b68ad581445427d51f e33002f85d35ee72f9b155437f36e9c103765cc3 f7cd1d8ccc310129bfb3ceb243b0c47284eaccf5 202f78110b0f343f565b8ac1ea633ded7b27ee11 df3b263c7525b030ed469116534560eb74ae8ddf Saving into BaselineCommit: 4d88fc65090fc186ee942d5247fbb43ddfa67a82 =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: 01902a482d8d51667174e18551fad475b57dc98c RENAMING 4d88fc65090fc186ee942d5247fbb43ddfa67a82 to latest_revision_validated_4d88fc65090fc186ee942d5247fbb43ddfa67a82 ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 1c59a5018700023f704a46b68ad581445427d51f e33002f85d35ee72f9b155437f36e9c103765cc3 f7cd1d8ccc310129bfb3ceb243b0c47284eaccf5 202f78110b0f343f565b8ac1ea633ded7b27ee11 df3b263c7525b030ed469116534560eb74ae8ddf Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE