Started by user Gunther Huebler Obtained jenkins_tests/cam_BFB_coarse_res_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 231228a130cc514a9762e976d83229ba1d77003c (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 231228a130cc514a9762e976d83229ba1d77003c # timeout=10 Commit message: "Update to make compatible with new stats. (#214)" > git rev-list --no-walk fc2aea51f7e10943c7ba8a276138380f33cc0a23 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_r8029_flags_gfortran_test_config ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 C11_Skw_fnc is NON-ZERO C6rt_Skw_fnc is NON-ZERO C6thl_Skw_fnc is NON-ZERO C7_Skw_fnc is NON-ZERO Kh_zm is NON-ZERO Kh_zt is NON-ZERO Lscale is NON-ZERO Lscale_down is NON-ZERO Lscale_pert_2 is NON-ZERO Lscale_up is NON-ZERO Ncnm is NON-ZERO Skw_velocity is NON-ZERO T_in_K is NON-ZERO a3_coef is NON-ZERO a3_coef_zt is NON-ZERO chi_1 is NON-ZERO chi_2 is NON-ZERO cloud_cover is NON-ZERO cloud_frac is NON-ZERO cloud_frac_1 is NON-ZERO cloud_frac_2 is NON-ZERO cloud_frac_zm is NON-ZERO corr_chi_eta_1 is NON-ZERO corr_chi_eta_2 is NON-ZERO corr_rt_thl_1 is NON-ZERO covar_chi_eta_1 is NON-ZERO covar_chi_eta_2 is NON-ZERO crt_1 is NON-ZERO crt_2 is NON-ZERO cthl_1 is NON-ZERO cthl_2 is NON-ZERO em is NON-ZERO mean_w_down is NON-ZERO mean_w_up is NON-ZERO mixt_frac is NON-ZERO rc_1 is NON-ZERO rc_2 is NON-ZERO rcm is NON-ZERO rcm_in_cloud is NON-ZERO rcm_in_layer is NON-ZERO rcm_sd_mg_morr is NON-ZERO rcp2 is NON-ZERO rel_humidity is NON-ZERO rsat is NON-ZERO rsati is NON-ZERO rsatl_1 is NON-ZERO rsatl_2 is NON-ZERO rt_1 is NON-ZERO rt_2 is NON-ZERO rtm is NON-ZERO rtm_bt is NON-ZERO rtm_cl is NON-ZERO rtm_enter_mfl is NON-ZERO rtm_exit_mfl is NON-ZERO rtm_ma is NON-ZERO rtm_mfl is NON-ZERO rtm_mfl_max is NON-ZERO rtm_mfl_min is NON-ZERO rtm_old is NON-ZERO rtm_ta is NON-ZERO rtm_without_ta is NON-ZERO rtp2 is NON-ZERO rtp2_bt is NON-ZERO rtp2_cl is NON-ZERO rtp2_dp1 is NON-ZERO rtp2_dp2 is NON-ZERO rtp2_ma is NON-ZERO rtp2_pd is NON-ZERO rtp2_sf is NON-ZERO rtp2_ta is NON-ZERO rtp2_tp is NON-ZERO rtp2_zt is NON-ZERO rtprcp is NON-ZERO rtpthlp is NON-ZERO rtpthlp_bt is NON-ZERO rtpthlp_cl is NON-ZERO rtpthlp_dp1 is NON-ZERO rtpthlp_dp2 is NON-ZERO rtpthlp_ma is NON-ZERO rtpthlp_sf is NON-ZERO rtpthlp_ta is NON-ZERO rtpthlp_tp1 is NON-ZERO rtpthlp_tp2 is NON-ZERO rtpthlp_zt is NON-ZERO rtpthvp is NON-ZERO rvm is NON-ZERO sed_rcm is NON-ZERO shear is NON-ZERO sigma_sqd_w is NON-ZERO sigma_sqd_w_zt is NON-ZERO stdev_chi_1 is NON-ZERO stdev_chi_2 is NON-ZERO stdev_eta_1 is NON-ZERO stdev_eta_2 is NON-ZERO tau_zm is NON-ZERO tau_zt is NON-ZERO thl_1 is NON-ZERO thl_2 is NON-ZERO thlm is NON-ZERO thlm_bt is NON-ZERO thlm_enter_mfl is NON-ZERO thlm_exit_mfl is NON-ZERO thlm_ma is NON-ZERO thlm_mc is NON-ZERO thlm_mfl is NON-ZERO thlm_mfl_max is NON-ZERO thlm_mfl_min is NON-ZERO thlm_old is NON-ZERO thlm_ta is NON-ZERO thlm_without_ta is NON-ZERO thlp2 is NON-ZERO thlp2_bt is NON-ZERO thlp2_cl is NON-ZERO thlp2_dp1 is NON-ZERO thlp2_dp2 is NON-ZERO thlp2_ma is NON-ZERO thlp2_pd is NON-ZERO thlp2_sf is NON-ZERO thlp2_ta is NON-ZERO thlp2_tp is NON-ZERO thlp2_zt is NON-ZERO thlprcp is NON-ZERO thlpthvp is NON-ZERO thv_ds_zt is NON-ZERO thvm is NON-ZERO u_T_cm is NON-ZERO um is NON-ZERO um_bt is NON-ZERO um_cf is NON-ZERO um_ndg is NON-ZERO um_ta is NON-ZERO up2 is NON-ZERO up2_bt is NON-ZERO up2_cl is NON-ZERO up2_dp1 is NON-ZERO up2_dp2 is NON-ZERO up2_ma is NON-ZERO up2_pd is NON-ZERO up2_pr1 is NON-ZERO up2_pr2 is NON-ZERO up2_sf is NON-ZERO up2_ta is NON-ZERO up2_tp is NON-ZERO up2_zt is NON-ZERO upwp is NON-ZERO upwp_zt is NON-ZERO varnce_rt_1 is NON-ZERO varnce_rt_2 is NON-ZERO varnce_thl_1 is NON-ZERO varnce_thl_2 is NON-ZERO varnce_w_1 is NON-ZERO varnce_w_2 is NON-ZERO vm is NON-ZERO vm_bt is NON-ZERO vm_cf is NON-ZERO vm_ta is NON-ZERO vp2 is NON-ZERO vp2_bt is NON-ZERO vp2_cl is NON-ZERO vp2_dp1 is NON-ZERO vp2_dp2 is NON-ZERO vp2_ma is NON-ZERO vp2_pd is NON-ZERO vp2_pr1 is NON-ZERO vp2_pr2 is NON-ZERO vp2_sf is NON-ZERO vp2_ta is NON-ZERO vp2_tp is NON-ZERO vp2_zt is NON-ZERO vpwp is NON-ZERO vpwp_zt is NON-ZERO w_1 is NON-ZERO w_2 is NON-ZERO wp2 is NON-ZERO wp2_ac is NON-ZERO wp2_bp is NON-ZERO wp2_bt is NON-ZERO wp2_cl is NON-ZERO wp2_dp1 is NON-ZERO wp2_dp2 is NON-ZERO wp2_ma is NON-ZERO wp2_pd is NON-ZERO wp2_pr1 is NON-ZERO wp2_pr2 is NON-ZERO wp2_pr3 is NON-ZERO wp2_sf is NON-ZERO wp2_ta is NON-ZERO wp2_zt is NON-ZERO wp2rcp is NON-ZERO wp2rtp is NON-ZERO wp2thlp is NON-ZERO wp2thvp is NON-ZERO wp3 is NON-ZERO wp3_ac is NON-ZERO wp3_bp1 is NON-ZERO wp3_bt is NON-ZERO wp3_cl is NON-ZERO wp3_dp1 is NON-ZERO wp3_ma is NON-ZERO wp3_on_wp2 is NON-ZERO wp3_on_wp2_zt is NON-ZERO wp3_pr1 is NON-ZERO wp3_pr2 is NON-ZERO wp3_pr_turb is NON-ZERO wp3_ta is NON-ZERO wp3_tp is NON-ZERO wp3_zm is NON-ZERO wp4 is NON-ZERO wprcp is NON-ZERO wprtp is NON-ZERO wprtp2 is NON-ZERO wprtp_ac is NON-ZERO wprtp_bp is NON-ZERO wprtp_bt is NON-ZERO wprtp_cl is NON-ZERO wprtp_dp1 is NON-ZERO wprtp_enter_mfl is NON-ZERO wprtp_exit_mfl is NON-ZERO wprtp_ma is NON-ZERO wprtp_mfl is NON-ZERO wprtp_mfl_max is NON-ZERO wprtp_mfl_min is NON-ZERO wprtp_pr1 is NON-ZERO wprtp_pr2 is NON-ZERO wprtp_pr3 is NON-ZERO wprtp_ta is NON-ZERO wprtp_tp is NON-ZERO wprtp_zt is NON-ZERO wprtpthlp is NON-ZERO wpthlp is NON-ZERO wpthlp2 is NON-ZERO wpthlp_ac is NON-ZERO wpthlp_bp is NON-ZERO wpthlp_bt is NON-ZERO wpthlp_cl is NON-ZERO wpthlp_dp1 is NON-ZERO wpthlp_enter_mfl is NON-ZERO wpthlp_exit_mfl is NON-ZERO wpthlp_ma is NON-ZERO wpthlp_mfl is NON-ZERO wpthlp_mfl_max is NON-ZERO wpthlp_mfl_min is NON-ZERO wpthlp_pr1 is NON-ZERO wpthlp_pr2 is NON-ZERO wpthlp_pr3 is NON-ZERO wpthlp_ta is NON-ZERO wpthlp_tp is NON-ZERO wpthlp_zt is NON-ZERO wpthvp is NON-ZERO FAIL: There were some non-zero 3D fields. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .', '\nrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 231228a130cc514a9762e976d83229ba1d77003c Found: BIT_CHANGING Checking Commit: 231228a130cc514a9762e976d83229ba1d77003c Checking out 231228a130cc514a9762e976d83229ba1d77003c Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .' Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Checking out fc2aea51f7e10943c7ba8a276138380f33cc0a23 Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .' Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 231228a130cc514a9762e976d83229ba1d77003c fc2aea51f7e10943c7ba8a276138380f33cc0a23' Commit '231228a130cc514a9762e976d83229ba1d77003c' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = fc2aea51f7e10943c7ba8a276138380f33cc0a23...231228a130cc514a9762e976d83229ba1d77003c -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 231228a130cc514a9762e976d83229ba1d77003c =============================== Cleanup =============================== Removing all generated output REMOVING: fc2aea51f7e10943c7ba8a276138380f33cc0a23 REMOVING: 231228a130cc514a9762e976d83229ba1d77003c ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS