Started by user Gunther Huebler
Obtained jenkins_tests/cam_BFB_coarse_res_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 231228a130cc514a9762e976d83229ba1d77003c (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 231228a130cc514a9762e976d83229ba1d77003c # timeout=10
Commit message: "Update to make compatible with new stats.  (#214)"
 > git rev-list --no-walk fc2aea51f7e10943c7ba8a276138380f33cc0a23 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_r8029_flags_gfortran_test_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
C11_Skw_fnc is NON-ZERO
C6rt_Skw_fnc is NON-ZERO
C6thl_Skw_fnc is NON-ZERO
C7_Skw_fnc is NON-ZERO
Kh_zm is NON-ZERO
Kh_zt is NON-ZERO
Lscale is NON-ZERO
Lscale_down is NON-ZERO
Lscale_pert_2 is NON-ZERO
Lscale_up is NON-ZERO
Ncnm is NON-ZERO
Skw_velocity is NON-ZERO
T_in_K is NON-ZERO
a3_coef is NON-ZERO
a3_coef_zt is NON-ZERO
chi_1 is NON-ZERO
chi_2 is NON-ZERO
cloud_cover is NON-ZERO
cloud_frac is NON-ZERO
cloud_frac_1 is NON-ZERO
cloud_frac_2 is NON-ZERO
cloud_frac_zm is NON-ZERO
corr_chi_eta_1 is NON-ZERO
corr_chi_eta_2 is NON-ZERO
corr_rt_thl_1 is NON-ZERO
covar_chi_eta_1 is NON-ZERO
covar_chi_eta_2 is NON-ZERO
crt_1 is NON-ZERO
crt_2 is NON-ZERO
cthl_1 is NON-ZERO
cthl_2 is NON-ZERO
em is NON-ZERO
mean_w_down is NON-ZERO
mean_w_up is NON-ZERO
mixt_frac is NON-ZERO
rc_1 is NON-ZERO
rc_2 is NON-ZERO
rcm is NON-ZERO
rcm_in_cloud is NON-ZERO
rcm_in_layer is NON-ZERO
rcm_sd_mg_morr is NON-ZERO
rcp2 is NON-ZERO
rel_humidity is NON-ZERO
rsat is NON-ZERO
rsati is NON-ZERO
rsatl_1 is NON-ZERO
rsatl_2 is NON-ZERO
rt_1 is NON-ZERO
rt_2 is NON-ZERO
rtm is NON-ZERO
rtm_bt is NON-ZERO
rtm_cl is NON-ZERO
rtm_enter_mfl is NON-ZERO
rtm_exit_mfl is NON-ZERO
rtm_ma is NON-ZERO
rtm_mfl is NON-ZERO
rtm_mfl_max is NON-ZERO
rtm_mfl_min is NON-ZERO
rtm_old is NON-ZERO
rtm_ta is NON-ZERO
rtm_without_ta is NON-ZERO
rtp2 is NON-ZERO
rtp2_bt is NON-ZERO
rtp2_cl is NON-ZERO
rtp2_dp1 is NON-ZERO
rtp2_dp2 is NON-ZERO
rtp2_ma is NON-ZERO
rtp2_pd is NON-ZERO
rtp2_sf is NON-ZERO
rtp2_ta is NON-ZERO
rtp2_tp is NON-ZERO
rtp2_zt is NON-ZERO
rtprcp is NON-ZERO
rtpthlp is NON-ZERO
rtpthlp_bt is NON-ZERO
rtpthlp_cl is NON-ZERO
rtpthlp_dp1 is NON-ZERO
rtpthlp_dp2 is NON-ZERO
rtpthlp_ma is NON-ZERO
rtpthlp_sf is NON-ZERO
rtpthlp_ta is NON-ZERO
rtpthlp_tp1 is NON-ZERO
rtpthlp_tp2 is NON-ZERO
rtpthlp_zt is NON-ZERO
rtpthvp is NON-ZERO
rvm is NON-ZERO
sed_rcm is NON-ZERO
shear is NON-ZERO
sigma_sqd_w is NON-ZERO
sigma_sqd_w_zt is NON-ZERO
stdev_chi_1 is NON-ZERO
stdev_chi_2 is NON-ZERO
stdev_eta_1 is NON-ZERO
stdev_eta_2 is NON-ZERO
tau_zm is NON-ZERO
tau_zt is NON-ZERO
thl_1 is NON-ZERO
thl_2 is NON-ZERO
thlm is NON-ZERO
thlm_bt is NON-ZERO
thlm_enter_mfl is NON-ZERO
thlm_exit_mfl is NON-ZERO
thlm_ma is NON-ZERO
thlm_mc is NON-ZERO
thlm_mfl is NON-ZERO
thlm_mfl_max is NON-ZERO
thlm_mfl_min is NON-ZERO
thlm_old is NON-ZERO
thlm_ta is NON-ZERO
thlm_without_ta is NON-ZERO
thlp2 is NON-ZERO
thlp2_bt is NON-ZERO
thlp2_cl is NON-ZERO
thlp2_dp1 is NON-ZERO
thlp2_dp2 is NON-ZERO
thlp2_ma is NON-ZERO
thlp2_pd is NON-ZERO
thlp2_sf is NON-ZERO
thlp2_ta is NON-ZERO
thlp2_tp is NON-ZERO
thlp2_zt is NON-ZERO
thlprcp is NON-ZERO
thlpthvp is NON-ZERO
thv_ds_zt is NON-ZERO
thvm is NON-ZERO
u_T_cm is NON-ZERO
um is NON-ZERO
um_bt is NON-ZERO
um_cf is NON-ZERO
um_ndg is NON-ZERO
um_ta is NON-ZERO
up2 is NON-ZERO
up2_bt is NON-ZERO
up2_cl is NON-ZERO
up2_dp1 is NON-ZERO
up2_dp2 is NON-ZERO
up2_ma is NON-ZERO
up2_pd is NON-ZERO
up2_pr1 is NON-ZERO
up2_pr2 is NON-ZERO
up2_sf is NON-ZERO
up2_ta is NON-ZERO
up2_tp is NON-ZERO
up2_zt is NON-ZERO
upwp is NON-ZERO
upwp_zt is NON-ZERO
varnce_rt_1 is NON-ZERO
varnce_rt_2 is NON-ZERO
varnce_thl_1 is NON-ZERO
varnce_thl_2 is NON-ZERO
varnce_w_1 is NON-ZERO
varnce_w_2 is NON-ZERO
vm is NON-ZERO
vm_bt is NON-ZERO
vm_cf is NON-ZERO
vm_ta is NON-ZERO
vp2 is NON-ZERO
vp2_bt is NON-ZERO
vp2_cl is NON-ZERO
vp2_dp1 is NON-ZERO
vp2_dp2 is NON-ZERO
vp2_ma is NON-ZERO
vp2_pd is NON-ZERO
vp2_pr1 is NON-ZERO
vp2_pr2 is NON-ZERO
vp2_sf is NON-ZERO
vp2_ta is NON-ZERO
vp2_tp is NON-ZERO
vp2_zt is NON-ZERO
vpwp is NON-ZERO
vpwp_zt is NON-ZERO
w_1 is NON-ZERO
w_2 is NON-ZERO
wp2 is NON-ZERO
wp2_ac is NON-ZERO
wp2_bp is NON-ZERO
wp2_bt is NON-ZERO
wp2_cl is NON-ZERO
wp2_dp1 is NON-ZERO
wp2_dp2 is NON-ZERO
wp2_ma is NON-ZERO
wp2_pd is NON-ZERO
wp2_pr1 is NON-ZERO
wp2_pr2 is NON-ZERO
wp2_pr3 is NON-ZERO
wp2_sf is NON-ZERO
wp2_ta is NON-ZERO
wp2_zt is NON-ZERO
wp2rcp is NON-ZERO
wp2rtp is NON-ZERO
wp2thlp is NON-ZERO
wp2thvp is NON-ZERO
wp3 is NON-ZERO
wp3_ac is NON-ZERO
wp3_bp1 is NON-ZERO
wp3_bt is NON-ZERO
wp3_cl is NON-ZERO
wp3_dp1 is NON-ZERO
wp3_ma is NON-ZERO
wp3_on_wp2 is NON-ZERO
wp3_on_wp2_zt is NON-ZERO
wp3_pr1 is NON-ZERO
wp3_pr2 is NON-ZERO
wp3_pr_turb is NON-ZERO
wp3_ta is NON-ZERO
wp3_tp is NON-ZERO
wp3_zm is NON-ZERO
wp4 is NON-ZERO
wprcp is NON-ZERO
wprtp is NON-ZERO
wprtp2 is NON-ZERO
wprtp_ac is NON-ZERO
wprtp_bp is NON-ZERO
wprtp_bt is NON-ZERO
wprtp_cl is NON-ZERO
wprtp_dp1 is NON-ZERO
wprtp_enter_mfl is NON-ZERO
wprtp_exit_mfl is NON-ZERO
wprtp_ma is NON-ZERO
wprtp_mfl is NON-ZERO
wprtp_mfl_max is NON-ZERO
wprtp_mfl_min is NON-ZERO
wprtp_pr1 is NON-ZERO
wprtp_pr2 is NON-ZERO
wprtp_pr3 is NON-ZERO
wprtp_ta is NON-ZERO
wprtp_tp is NON-ZERO
wprtp_zt is NON-ZERO
wprtpthlp is NON-ZERO
wpthlp is NON-ZERO
wpthlp2 is NON-ZERO
wpthlp_ac is NON-ZERO
wpthlp_bp is NON-ZERO
wpthlp_bt is NON-ZERO
wpthlp_cl is NON-ZERO
wpthlp_dp1 is NON-ZERO
wpthlp_enter_mfl is NON-ZERO
wpthlp_exit_mfl is NON-ZERO
wpthlp_ma is NON-ZERO
wpthlp_mfl is NON-ZERO
wpthlp_mfl_max is NON-ZERO
wpthlp_mfl_min is NON-ZERO
wpthlp_pr1 is NON-ZERO
wpthlp_pr2 is NON-ZERO
wpthlp_pr3 is NON-ZERO
wpthlp_ta is NON-ZERO
wpthlp_tp is NON-ZERO
wpthlp_zt is NON-ZERO
wpthvp is NON-ZERO
FAIL: There were some non-zero 3D fields.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test

Using /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test with origin https://github.com/larson-group/cam.git

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

CheckRange = False: only comparing baseline to final commit.

Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc

Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .', '\nrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh']

Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: 231228a130cc514a9762e976d83229ba1d77003c
	Found: BIT_CHANGING

Checking Commit: 231228a130cc514a9762e976d83229ba1d77003c
	Checking out 231228a130cc514a9762e976d83229ba1d77003c
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .'
	Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'
	Checking out fc2aea51f7e10943c7ba8a276138380f33cc0a23
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .'
	Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'
	Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 231228a130cc514a9762e976d83229ba1d77003c fc2aea51f7e10943c7ba8a276138380f33cc0a23'
	Commit '231228a130cc514a9762e976d83229ba1d77003c' is BIT_CHANGING and properly labelled as such.

=============================== Test Results ===============================

Commit Range Checked = fc2aea51f7e10943c7ba8a276138380f33cc0a23...231228a130cc514a9762e976d83229ba1d77003c
-- CheckRange was set to False, no intermediate commits checked

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 231228a130cc514a9762e976d83229ba1d77003c

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: fc2aea51f7e10943c7ba8a276138380f33cc0a23
	REMOVING: 231228a130cc514a9762e976d83229ba1d77003c

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS