Started by user agent_dev Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_branch_dash@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_dash/Jenkinsfile The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_branch_dash@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/codex/unified-json-inputs^{commit} # timeout=10 Checking out Revision ad5c77ff14b7ff0d021731828fc2d1d8bc9b5c06 (refs/remotes/origin/codex/unified-json-inputs) > git config core.sparsecheckout # timeout=10 > git checkout -f ad5c77ff14b7ff0d021731828fc2d1d8bc9b5c06 # timeout=10 Commit message: "Fix remaining JSON input paths and native tuner bounds" > git rev-list --no-walk 3152c64e32bb4731ba4337f0e170403d891ccb54 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on overlie in /home/jenkins/workspace/clubb_branch_dash [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_branch_dash # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision ad5c77ff14b7ff0d021731828fc2d1d8bc9b5c06 (refs/remotes/origin/codex/unified-json-inputs) Commit message: "Fix remaining JSON input paths and native tuner bounds" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Dash pytests) [Pipeline] withEnv [Pipeline] { [Pipeline] sh > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/codex/unified-json-inputs^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f ad5c77ff14b7ff0d021731828fc2d1d8bc9b5c06 # timeout=10 + export PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + node --version v22.23.3 + bash tests/run_pytests.sh -dash -include_generated --junitxml=/home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml --durations=10 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_branch_dash/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing dash requirements into /home/jenkins/workspace/clubb_branch_dash/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 72 packages in 721ms Downloading cryptography (4.5MiB) Downloading pygments (1.2MiB) Downloading numpy (16.0MiB) Downloading pillow (6.6MiB) Downloading kiwisolver (1.4MiB) Downloading plotly (9.5MiB) Downloading dash (7.6MiB) Downloading pydantic-core (2.1MiB) Downloading meson (1.1MiB) Downloading netcdf4 (10.1MiB) Downloading fonttools (5.2MiB) Downloading cftime (1.6MiB) Downloading scipy (33.7MiB) Downloading matplotlib (8.4MiB) Downloaded kiwisolver Downloaded cftime Downloaded pydantic-core Downloaded meson Downloaded pygments Downloaded cryptography Downloaded fonttools Downloaded pillow Downloaded dash Downloaded matplotlib Downloaded netcdf4 Downloaded numpy Downloaded plotly Downloaded scipy Prepared 72 packages in 1.86s Installed 72 packages in 133ms + annotated-types==0.8.0 + anyio==4.15.1 + attrs==26.1.0 + blinker==1.9.0 + certifi==2026.10.19 + cffi==2.1.1 + cftime==1.6.6.1 + charset-normalizer==3.5.2 + click==8.5.0 + contourpy==1.4.0 + cryptography==50.0.2 + cycler==0.12.1 + dash==3.4.0 + dill==0.4.1 + diskcache==5.6.3 + flask==3.1.3 + fonttools==4.67.0 + h11==0.16.0 + httpcore==1.0.9 + httpx==0.28.1 + httpx-sse==0.4.3 + idna==3.20 + importlib-metadata==9.0.1 + iniconfig==2.3.1 + itsdangerous==2.2.0 + jinja2==3.1.6 + jsonschema==4.26.0 + jsonschema-specifications==2025.9.1 + kiwisolver==1.5.1 + markupsafe==3.0.4 + matplotlib==3.10.9 + mcp==1.30.0 + meson==1.12.1 + multiprocess==0.70.19 + narwhals==2.27.1 + nest-asyncio==1.6.0 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pillow==12.3.0 + plotly==6.9.0 + pluggy==1.7.0 + psutil==7.2.2 + pycparser==3.11 + pydantic==2.14.1 + pydantic-core==2.50.1 + pydantic-settings==2.16.1 + pygments==2.21.0 + pyjwt==2.15.1 + pyparsing==3.3.3 + pytest==9.1.1 + python-dateutil==3.0.0 + python-dotenv==1.2.4 + python-multipart==0.0.32 + referencing==0.37.0 + requests==2.34.2 + retrying==1.4.2 + rpds-py==2026.9.1 + scipy==1.18.1 + setuptools==84.2.1 + six==1.17.0 + sse-starlette==3.5.0 + starlette==1.9.0 + tabulate==0.10.0 + typing-extensions==4.16.0 + typing-inspection==0.4.4 + tzdata==2026.5 + urllib3==2.8.0 + uvicorn==0.54.0 + werkzeug==3.1.9 + zipp==4.1.2 Ready: /home/jenkins/workspace/clubb_branch_dash/.venv-python/bin/python ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.7.0 rootdir: /home/jenkins/workspace/clubb_branch_dash plugins: dash-3.4.0, anyio-4.15.1 collected 648 items dash_app/pytests/auto_llm_generated_pytests/test_case_editor.py ........ [ 1%] ......... [ 2%] dash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.py . [ 2%] .............. [ 4%] dash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.py . [ 5%] [ 5%] dash_app/pytests/test_activity.py ......... [ 6%] dash_app/pytests/test_agent_integration.py .............. [ 8%] dash_app/pytests/test_agent_plot_actions.py ........ [ 9%] dash_app/pytests/test_agent_services.py ................................ [ 14%] ................. [ 17%] dash_app/pytests/test_agent_tab_registry.py ...... [ 18%] dash_app/pytests/test_agent_tuning.py ............ [ 20%] dash_app/pytests/test_analysis.py ..... [ 20%] dash_app/pytests/test_app_startup.py .......... [ 22%] dash_app/pytests/test_atlas.py . [ 22%] dash_app/pytests/test_bivariate_heatmap.py .. [ 22%] dash_app/pytests/test_callbacks_runs.py ............ [ 24%] dash_app/pytests/test_compile_tab_build_status.py ................. [ 27%] dash_app/pytests/test_custom_plot.py ........ [ 28%] dash_app/pytests/test_dashboard_activity_labels.py . [ 28%] dash_app/pytests/test_dashboard_lifecycle.py ... [ 29%] dash_app/pytests/test_dashboard_manager.py ...... [ 30%] dash_app/pytests/test_equations.py ... [ 30%] dash_app/pytests/test_fill_holes_viewer.py .... [ 31%] dash_app/pytests/test_jax_device.py ..................... [ 34%] dash_app/pytests/test_mcp_endpoint.py ... [ 35%] dash_app/pytests/test_misc_tab.py ... [ 35%] dash_app/pytests/test_netcdf.py ...... [ 36%] dash_app/pytests/test_output_directory_picker.py ...... [ 37%] dash_app/pytests/test_output_discovery.py ....... [ 38%] dash_app/pytests/test_pane_resize.py ... [ 38%] dash_app/pytests/test_param_disclosures.py ........ [ 40%] dash_app/pytests/test_pdf_contour_plot.py ...................... [ 43%] dash_app/pytests/test_performance_polling.py ....... [ 44%] dash_app/pytests/test_persistence.py .... [ 45%] dash_app/pytests/test_plot_case_cache.py .......... [ 46%] dash_app/pytests/test_plot_extraction.py ............................... [ 51%] [ 51%] dash_app/pytests/test_plot_grid_updates.py ..... [ 52%] dash_app/pytests/test_plot_help.py ... [ 52%] dash_app/pytests/test_plot_tasks.py .......... [ 54%] dash_app/pytests/test_plot_transitions.py ............. [ 56%] dash_app/pytests/test_profile_tab.py .............................. [ 60%] dash_app/pytests/test_profiles.py ...... [ 61%] dash_app/pytests/test_pyplotgen_export.py ...... [ 62%] dash_app/pytests/test_pyplotgen_output_handler.py . [ 62%] dash_app/pytests/test_reports_tab.py ....... [ 64%] dash_app/pytests/test_run_broker_simplification.py ..................... [ 67%] [ 67%] dash_app/pytests/test_run_callbacks_settings.py .............. [ 69%] dash_app/pytests/test_run_runtime.py ................................... [ 74%] ...................................... [ 80%] dash_app/pytests/test_runtime.py .. [ 81%] dash_app/pytests/test_runtime_logging.py ..... [ 81%] dash_app/pytests/test_runtime_loss_batches.py . [ 81%] dash_app/pytests/test_sam_3d_reference.py . [ 82%] dash_app/pytests/test_scm_override.py ...... [ 83%] dash_app/pytests/test_selected_build.py ..................... [ 86%] dash_app/pytests/test_state_persistence.py ............. [ 88%] dash_app/pytests/test_stats_selection.py ............................... [ 93%] [ 93%] dash_app/pytests/test_taylor_window_display.py ..... [ 93%] dash_app/pytests/test_tunable_config_save.py ............... [ 96%] dash_app/pytests/test_tune_callbacks_settings.py ............. [ 98%] dash_app/pytests/test_tutorial_tab.py .. [ 98%] dash_app/pytests/test_two_gaussian_model.py ...... [ 99%] dash_app/pytests/test_workspace_selection.py .... [100%] =============================== warnings summary =============================== dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_str = getattr(ast, "Str", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_str is not None and isinstance(node, legacy_str): dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_num = getattr(ast, "Num", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_num is not None and isinstance(node, legacy_num): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml - ============================= slowest 10 durations ============================= 1.52s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results 1.23s call dash_app/pytests/test_agent_services.py::test_mcp_stdio_discovery_and_structured_error_round_trip 1.06s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png 0.95s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process 0.73s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update 0.65s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations 0.56s call dash_app/pytests/test_run_broker_simplification.py::test_default_new_scenario_keeps_four_reservations_and_restarts_finished_case 0.45s call dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear 0.43s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages 0.43s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels ===================== 648 passed, 8242 warnings in 27.37s ====================== [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] junit Recording test results [Checks API] No suitable checks publisher found. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS