Started by user Gunther Huebler Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/cam_gpu_test_branch@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_gpu_test/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_gpu_test_branch@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/cam6_4_183_clubb_silhs_merge^{commit} # timeout=10 Checking out Revision 73c94152623efb87f92db89bb6277c5c3d6fdbc8 (refs/remotes/origin/cam6_4_183_clubb_silhs_merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 73c94152623efb87f92db89bb6277c5c3d6fdbc8 # timeout=10 Commit message: "Updating scripts and custom ccs_config stuff - more of which is needed now due to recently updates" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/cam_gpu_test_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_gpu_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 73c94152623efb87f92db89bb6277c5c3d6fdbc8 (refs/remotes/origin/cam6_4_183_clubb_silhs_merge) > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/cam6_4_183_clubb_silhs_merge^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 73c94152623efb87f92db89bb6277c5c3d6fdbc8 # timeout=10 Commit message: "Updating scripts and custom ccs_config stuff - more of which is needed now due to recently updates" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. fms up to date. Recursively checking out submodules of fms ccs_config up to date. share up to date. cdeps up to date. Recursively checking out submodules of cdeps cmeps up to date. geoschem up to date. Recursively checking out submodules of geoschem mizuRoute up to date. Recursively checking out submodules of mizuRoute cice up to date. Recursively checking out submodules of cice tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. parallelio up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src clm up to date. Recursively checking out submodules of clm cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Running ne3 with OpenACC) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_gpu_test_branch/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_gpu_test_branch/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3125-g73c941526 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_FHISTC_LTso_cam7_ne3pg3_gpu_no_silhs_larson-group_nvhpc WARNING: Macros of the form COMPILER_MACHINE.cmake are deprecated and should be replaced with the form MACHINE_COMPILER.cmake Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_gpu_test_branch/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_gpu_test_branch/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_gpu_test_branch/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run Cmd('git') failed due to: exit code(128) cmdline: git commit -m "local git repository created" stderr: 'Author identity unknown *** Please tell me who you are. Run git config --global user.email "you@example.com" git config --global user.name "Your Name" to set your account's default identity. Omit --global to set the identity only in this repository. fatal: empty ident name (for <jenkins@pop-os.localdomain>) not allowed' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/cesm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/cesm.bldlog.*.gz: No such file or directory [Pipeline] echo WARNING: One or more of the build logs were not zipped, this means compilation did not finish [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/run/cesm.log.*.gz' gzip: /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/run/cesm.log.*.gz: No such file or directory [Pipeline] echo WARNING: One or more of the run logs were not zipped, this means the code did not run to completion [Pipeline] sh + cat '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*' cat: '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*': No such file or directory [Pipeline] echo WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE