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lh_sequence_length = 1
lh_seed = 5489
l_fix_w_chi_eta_correlations = T
l_silhs_KK_convergence_adj_mean = F
importance_prob_thresh = 1.000000000000000E-008
host_dx = 1000000.00000000
host_dy = 1000000.00000000
hmp2_ip_on_hmm2_ip_slope%rr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%ri = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rs = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rg = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Nr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ng = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_intrcpt%rr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%ri = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rs = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rg = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Nr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ng = 0.540000000000000
Ncnp2_on_Ncnm2 = 1.00000000000000
C_evap = 0.860000000000000
r_0 = 2.500000000000000E-005
microphys_start_time = 0.000000000000000E+000
Nc0_in_cloud = 100000000.000000
ccnconst = 120.000000000000
ccnexpnt = 0.400000005960464
aer_rm1 = 1.100000002196566E-008
aer_rm2 = 5.999999785899490E-008
aer_n1 = 125000000.000000
aer_n2 = 65000000.0000000
aer_sig1 = 1.20000004768372
aer_sig2 = 1.70000004768372
pgam_fixed = 5.00000000000000
precip_frac_calc_type = 2
--------------------------------------------------
&SILHS_setting
--------------------------------------------------
Warning: missing correlation input file(s): ../input/case_setups/bomex_corr_arr
ay_cloud.in and/or ../input/case_setups/bomex_corr_array_below.in
The default correlation arrays will be used.
--------------------------------------------------
&radiation_setting
--------------------------------------------------
rad_scheme = simplified_bomex
sol_const = 1367.00000000000
alvdr = 0.100000000000000
alvdf = 0.100000000000000
alndr = 0.100000000000000
alndf = 0.100000000000000
radiation_top = 50000.0000000000
F0 = 100.000000000000
F1 = 20.0000000000000
kappa = 119.000000000000
gc = 0.860000000000000
omega = 0.996500000000000
slr = 1.00000000000000
l_rad_above_cloud = F
l_sw_radiation = F
l_fix_cos_solar_zen = F
l_use_default_std_atmosphere = T
Fs_values = 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
cos_solar_zen_values = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
cos_solar_zen_times = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
eff_drop_radius = 1.000000000000000E-005
--------------------------------------------------
&configurable_clubb_flags_nl
--------------------------------------------------
iiPDF_type = 1
ipdf_call_placement = 2
penta_solve_method = 1
tridiag_solve_method = 1
grid_remap_method = 1
grid_adapt_in_time_method = 0
l_use_precip_frac = T
l_predict_upwp_vpwp = T
l_ho_nontrad_coriolis = F
l_ho_trad_coriolis = F
l_min_wp2_from_corr_wx = F
l_min_xp2_from_corr_wx = T
l_C2_cloud_frac = F
l_diffuse_rtm_and_thlm = F
l_stability_correct_Kh_N2_zm = F
l_calc_thlp2_rad = T
l_upwind_xpyp_ta = T
l_upwind_xm_ma = T
l_uv_nudge = F
l_rtm_nudge = F
l_tke_aniso = T
l_vert_avg_closure = F
l_trapezoidal_rule_zt = F
l_trapezoidal_rule_zm = F
l_call_pdf_closure_twice = F
l_standard_term_ta = F
l_partial_upwind_wp3 = F
l_godunov_upwind_wpxp_ta = F
l_godunov_upwind_xpyp_ta = F
l_use_cloud_cover = F
l_diagnose_correlations = F
l_calc_w_corr = F
l_const_Nc_in_cloud = F
l_fix_w_chi_eta_correlations = T
l_stability_correct_tau_zm = F
l_damp_wp2_using_em = T
l_do_expldiff_rtm_thlm = F
l_Lscale_plume_centered = F
l_diag_Lscale_from_tau = T
l_use_C7_Richardson = T
l_use_C11_Richardson = F
l_use_shear_Richardson = F
l_brunt_vaisala_freq_moist = F
l_use_thvm_in_bv_freq = F
l_rcm_supersat_adj = T
l_damp_wp3_Skw_squared = T
l_prescribed_avg_deltaz = F
l_lmm_stepping = F
l_e3sm_config = F
l_vary_convect_depth = F
l_use_tke_in_wp3_pr_turb_term = T
l_use_tke_in_wp2_wp3_K_dfsn = F
l_use_wp3_lim_with_smth_Heaviside = F
l_smooth_Heaviside_tau_wpxp = T
l_modify_limiters_for_cnvg_test = F
l_enable_relaxed_clipping = F
l_linearize_pbl_winds = F
l_mono_flux_lim_thlm = T
l_mono_flux_lim_rtm = T
l_mono_flux_lim_um = T
l_mono_flux_lim_vm = T
l_mono_flux_lim_spikefix = T
l_host_applies_sfc_fluxes = F
l_wp2_fill_holes_tke = T
l_add_dycore_grid = F
--------------------------------------------------
git diff src/
--------------------------------------------------
See *setup.txt file in output folder
Path to sounding: bomex_sounding.in
File exists? T
Path to sclr_sounding: bomex_sclr_sounding.in
File exists? T
Path to edsclr_sounding: bomex_edsclr_sounding.in
File exists? T
Reading in sounding information
z = 0.000000000000000E+000 100.000000000000 200.000000000000
300.000000000000 400.000000000000 500.000000000000
520.000000000000 600.000000000000 700.000000000000
800.000000000000 900.000000000000 1000.00000000000
1100.00000000000 1200.00000000000 1300.00000000000
1400.00000000000 1480.00000000000 1500.00000000000
1600.00000000000 1700.00000000000 1800.00000000000
1900.00000000000 2000.00000000000 2099.90000000000
2100.00000000000 2200.00000000000 2300.00000000000
2400.00000000000 2500.00000000000 2600.00000000000
2700.00000000000 2800.00000000000 2900.00000000000
3000.00000000000 3100.00000000000 3200.00000000000
3300.00000000000 3400.00000000000 3500.00000000000
u = -8.75000000000000 -8.75000000000000 -8.75000000000000
-8.75000000000000 -8.75000000000000 -8.75000000000000
-8.75000000000000 -8.75000000000000 -8.75000000000000
-8.57000000000000 -8.39000000000000 -8.21000000000000
-8.03000000000000 -7.85000000000000 -7.67000000000000
-7.49000000000000 -7.34600000000000 -7.31000000000000
-7.13000000000000 -6.95000000000000 -6.77000000000000
-6.59000000000000 -6.41000000000000 -6.23018000000000
-6.23000000000000 -6.05000000000000 -5.87000000000000
-5.69000000000000 -5.51000000000000 -5.33000000000000
-5.15000000000000 -4.97000000000000 -4.79000000000000
-4.61000000000000 -4.43000000000000 -4.25000000000000
-4.07000000000000 -3.89000000000000 -3.71000000000000
v = 0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
ug = -10.0000000000000 -9.82000000000000 -9.64000000000000
-9.46000000000000 -9.28000000000000 -9.10000000000000
-9.06400000000000 -8.92000000000000 -8.74000000000000
-8.56000000000000 -8.38000000000000 -8.20000000000000
-8.02000000000000 -7.84000000000000 -7.66000000000000
-7.48000000000000 -7.33600000000000 -7.30000000000000
-7.12000000000000 -6.94000000000000 -6.76000000000000
-6.58000000000000 -6.40000000000000 -6.22018000000000
-6.22000000000000 -6.04000000000000 -5.86000000000000
-5.68000000000000 -5.50000000000000 -5.32000000000000
-5.14000000000000 -4.96000000000000 -4.78000000000000
-4.60000000000000 -4.42000000000000 -4.24000000000000
-4.06000000000000 -3.88000000000000 -3.70000000000000
vg = 0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
theta = 298.700000000000 298.700000000000
298.700000000000 298.700000000000 298.700000000000
298.700000000000 298.700000000000 299.008333333333
299.393750000000 299.779166666667 300.164583333333
300.550000000000 300.935416666667 301.320833333333
301.706250000000 302.091666666667 302.400000000000
302.630769230769 303.784615384615 304.938461538462
306.092307692308 307.246153846154 308.400000000000
308.751315000000 308.751666666667 309.103333333333
309.455000000000 309.806666666667 310.158333333333
310.510000000000 310.861666666667 311.213333333333
311.565000000000 311.916666666667 312.268333333333
312.620000000000 312.971666666667 313.323333333333
313.675000000000
rt = 1.729000000000000E-002 1.715153846153846E-002 1.701307692307692E-002
1.687461538461538E-002 1.673615384615385E-002 1.659769230769231E-002
1.657000000000000E-002 1.609000000000000E-002 1.549000000000000E-002
1.489128205128205E-002 1.429256410256410E-002 1.369384615384615E-002
1.309512820512821E-002 1.249641025641026E-002 1.189769230769231E-002
1.129897435897436E-002 1.082000000000000E-002 1.056615384615385E-002
9.296923076923076E-003 8.027692307692309E-003 6.758461538461538E-003
5.489230769230770E-003 4.220000000000000E-003 4.099454000000000E-003
4.099333333333333E-003 3.978666666666667E-003 3.858000000000000E-003
3.737333333333333E-003 3.616666666666666E-003 3.496000000000000E-003
3.375333333333333E-003 3.254666666666667E-003 3.134000000000000E-003
3.013333333333333E-003 2.892666666666667E-003 2.772000000000000E-003
2.651333333333333E-003 2.530666666666666E-003 2.410000000000000E-003
p_in_Pa = -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000
subs = 0.000000000000000E+000 -4.333333108108108E-004 -8.666666216216216E-004
-1.299999932432433E-003 -1.733333243243243E-003 -2.166666554054054E-003
-2.253333216216217E-003 -2.599999864864865E-003 -3.033333175675676E-003
-3.466666486486486E-003 -3.899999797297298E-003 -4.333333108108108E-003
-4.766666418918919E-003 -5.199999729729730E-003 -5.633333040540540E-003
-6.066666351351352E-003 -6.413333000000000E-003 -6.500000000000000E-003
-5.416666611101850E-003 -4.333333222203701E-003 -3.249999833305551E-003
-2.166666444407402E-003 -1.083333055509252E-003 -1.082999999999813E-006
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
stats_nsamp = 1
stats_nout = 1
When the l_diag_Lscale_from_tau flag is enabled, C2rt must have a value of 1.
C2rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2thl must have a value of 1.
C2thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rtthl must have a value of 1
.
C2rtthl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rt must have a value of 1.
C6rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rtb must have a value of 1.
C6rtb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thl must have a value of 1.
C6thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thlb must have a value of 1.
C6thlb = 2.00000000000000
Warning in check_clubb_settings_api
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CLUBB-TIMER time_loop_init = 0.0515
CLUBB-TIMER time_clubb_advance = 0.8256
CLUBB-TIMER time_clubb_pdf = 0.0005
CLUBB-TIMER time_SILHS = 0.0004
CLUBB-TIMER time_microphys_scheme = 0.0000
CLUBB-TIMER time_microphys_advance = 0.0000
CLUBB-TIMER time_loop_end = 0.0000
CLUBB-TIMER time_adapt_grid = 0.0000
CLUBB-TIMER time_total = 2.2300
Program exited normally
Wrote files with prefix 'bomex' in /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/output
- bomex_lh_zt.nc: 59 vars
- bomex_sfc.nc: 40 vars
- bomex_zm.nc: 252 vars
- bomex_lh_sfc.nc: 6 vars
- bomex_zt.nc: 434 vars
Skipped output files due to missing vertical grid in input:
- bomex_rad_zt.nc
- bomex_rad_zm.nc
- bomex_nl_lh_sample_points_2D.nc
- bomex_u_lh_sample_points_2D.nc
+ clubb/run_scripts/run_scm.py fire
- using executable: /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/run_scripts/../install/latest/clubb_standalone
=================== Running fire ===================
2026/02/18 02:45:12
--------------------------------------------------
Latest git log entry
--------------------------------------------------
A detailed git diff can be found at the end of this file
--------------------------------------------------
Tunable Parameters:
--------------------------------------------------
--------------------------------------------------
Preprocessing Directives:
--------------------------------------------------
-DNETCDF enabled
-DCOAMPS_MICRO enabled
-DTUNER disabled
-DSILHS enabled
-Dnooverlap enabled
-Draoffline enabled
-DUSE_BUGSrad_ocast_random disabled
-DBYTESWAP_IO disabled
--------------------------------------------------
&model_setting
--------------------------------------------------
runtype = fire
nzmax = 48
grid_type = 1
deltaz = 25.0000000000000
zm_init = 0.000000000000000E+000
zm_top = 1600.00000000000
zt_grid_fname =
zm_grid_fname =
day = 7
month = 7
year = 1987
lat_vals = 43.2300000000000
lon_vals = -125.000000000000
sfc_elevation = 0.000000000000000E+000
time_initial = 0.000000000000000E+000
time_final = 10800.0000000000
dt_main = 60.0000000000000
dt_rad = 60.0000000000000
sfctype = 1
T_sfc = 288.000000000000
p_sfc = 100000.000000000
sens_ht = 0.000000000000000E+000
latent_ht = 0.000000000000000E+000
fcor = 1.000000000000000E-004
fcor_y = 1.062604968991745E-004
T0 = 300.000000000000
ts_nudge = 86400.0000000000
forcings_file_path =
l_t_dependent = T
l_ignore_forcings = T
l_modify_ic_with_cubic_int = F
l_modify_bc_for_cnvg_test = F
l_input_xpwp_sfc = F
saturation_formula = 3
thlm_sponge_damp_settings%l_sponge_damping = F
rtm_sponge_damp_settings%l_sponge_damping = F
uv_sponge_damp_settings%l_sponge_damping = F
wp2_sponge_damp_settings%l_sponge_damping = F
wp3_sponge_damp_settings%l_sponge_damping = F
up2_vp2_sponge_damp_settings%l_sponge_damping = F
thlm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
thlm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
thlm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
rtm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
rtm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
rtm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
uv_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
uv_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
uv_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp3_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp3_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp3_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
up2_vp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
l_soil_veg = F
l_restart = F
l_input_fields = F
restart_path_case = restart/fire
time_restart = 0.000000000000000E+000
debug_level = 2
sclr_dim = 0
edsclr_dim = 0
iisclr_thl = -2
iisclr_rt = -1
iisclr_CO2 = -1
sclr_tol =
--------------------------------------------------
&stats_setting
--------------------------------------------------
l_stats = T
fname_prefix = fire
stats_fmt = netcdf
stats_tsamp = 60.0000000000000
stats_tout = 60.0000000000000
l_allow_small_stats_tout = F
Constant flags:
l_pos_def = F
l_gamma_Skw = T
l_byteswap_io = F
Constant tolerances [units]
rt_tol [kg/kg] = 1.000000000000000E-008
thl_tol [K] = 1.000000000000000E-002
w_tol [m/s] = 2.000000000000000E-002
Parameter Value
--------- -----
C1 = 1.00000000000000000000
C1b = 1.00000000000000000000
C1c = 1.00000000000000000000
C2rt = 2.00000000000000000000
C2thl = 2.00000000000000000000
C2rtthl = 2.00000000000000000000
C4 = 2.00000000000000000000
C_uu_shr = 0.40000000000000002220
C_uu_buoy = 0.29999999999999998890
C6rt = 2.00000000000000000000
C6rtb = 2.00000000000000000000
C6rtc = 1.00000000000000000000
C6thl = 2.00000000000000000000
C6thlb = 2.00000000000000000000
C6thlc = 1.00000000000000000000
C7 = 0.50000000000000000000
C7b = 0.50000000000000000000
C7c = 0.50000000000000000000
C8 = 0.50000000000000000000
C8b = 0.02000000000000000042
C10 = 3.29999999999999982236
C11 = 0.40000000000000002220
C11b = 0.40000000000000002220
C11c = 0.50000000000000000000
C12 = 1.00000000000000000000
C13 = 0.10000000000000000555
C14 = 1.00000000000000000000
C_wp2_pr_dfsn = 0.00000000000000000000
C_wp3_pr_tp = 0.00000000000000000000
C_wp3_pr_turb = 1.00000000000000000000
C_wp3_pr_dfsn = 0.00000000000000000000
C_wp2_splat = 0.00000000000000000000
C6rt_Lscale0 = 14.00000000000000000000
C6thl_Lscale0 = 14.00000000000000000000
C7_Lscale0 = 0.84999999999999997780
wpxp_L_thresh = 60.00000000000000000000
c_K = 0.20000000000000001110
c_K1 = 0.20000000000000001110
nu1 = 20.00000000000000000000
c_K2 = 0.02500000000000000139
nu2 = 1.00000000000000000000
c_K6 = 0.37500000000000000000
nu6 = 5.00000000000000000000
c_K8 = 5.00000000000000000000
nu8 = 20.00000000000000000000
c_K9 = 0.10000000000000000555
nu9 = 10.00000000000000000000
nu10 = 0.00000000000000000000
c_K_hm = 0.75000000000000000000
c_K_hmb = 0.75000000000000000000
K_hm_min_coef = 0.10000000000000000555
nu_hm = 1.50000000000000000000
slope_coef_spread_DG_means_w = 21.00000000000000000000
pdf_component_stdev_factor_w = 1.00000000000000000000
coef_spread_DG_means_rt = 0.80000000000000004441
coef_spread_DG_means_thl = 0.80000000000000004441
gamma_coef = 0.25000000000000000000
gamma_coefb = 0.25000000000000000000
gamma_coefc = 5.00000000000000000000
mu = 0.00100000000000000002
beta = 1.00000000000000000000
lmin_coef = 0.50000000000000000000
omicron = 0.50000000000000000000
zeta_vrnce_rat = 0.00000000000000000000
upsilon_precip_frac_rat = 0.55000000000000004441
lambda0_stability_coef = 0.02999999999999999889
mult_coef = 0.50000000000000000000
taumin = 90.00000000000000000000
taumax = 3600.00000000000000000000
Lscale_mu_coef = 2.00000000000000000000
Lscale_pert_coef = 0.10000000000000000555
alpha_corr = 0.14999999999999999445
Skw_denom_coef = 4.00000000000000000000
c_K10 = 1.00000000000000000000
c_K10h = 1.00000000000000000000
thlp2_rad_coef = 1.00000000000000000000
thlp2_rad_cloud_frac_thresh = 0.10000000000000000555
up2_sfc_coef = 4.00000000000000000000
Skw_max_mag = 10.00000000000000000000
C_invrs_tau_bkgnd = 1.10000000000000008882
C_invrs_tau_sfc = 0.10000000000000000555
C_invrs_tau_shear = 0.14999999999999999445
C_invrs_tau_N2 = 0.40000000000000002220
C_invrs_tau_N2_wp2 = 0.20000000000000001110
C_invrs_tau_N2_xp2 = 0.05000000000000000278
C_invrs_tau_N2_wpxp = 0.00000000000000000000
C_invrs_tau_N2_clear_wp3 = 1.00000000000000000000
C_invrs_tau_wpxp_Ri = 0.34999999999999997780
C_invrs_tau_wpxp_N2_thresh = 0.00033000000000000000
xp3_coef_base = 0.25000000000000000000
xp3_coef_slope = 0.01000000000000000021
altitude_threshold = 100.00000000000000000000
rtp2_clip_coef = 0.50000000000000000000
Cx_min = 0.33000000000000001554
Cx_max = 0.94999999999999995559
Richardson_num_min = 0.25000000000000000000
Richardson_num_max = 400.00000000000000000000
a3_coef_min = 1.00000000000000000000
a_const = 1.80000000000000004441
bv_efold = 5.00000000000000000000
wpxp_Ri_exp = 0.50000000000000000000
z_displace = 25.00000000000000000000
--------------------------------------------------
µphysics_setting
--------------------------------------------------
microphys_scheme = none
l_cloud_sed = F
sigma_g = 1.50000000000000
l_graupel = F
l_hail = F
l_seifert_beheng = F
l_predict_Nc = F
l_const_Nc_in_cloud = F
specify_aerosol = morrison_lognormal
l_subgrid_w = T
l_arctic_nucl = F
l_cloud_edge_activation = F
l_fix_pgam = F
l_in_cloud_Nc_diff = T
l_var_covar_src = T
l_upwind_diff_sed = F
lh_microphys_type = disabled
lh_num_samples = 2
lh_sequence_length = 1
lh_seed = 5489
l_fix_w_chi_eta_correlations = T
l_silhs_KK_convergence_adj_mean = F
importance_prob_thresh = 1.000000000000000E-008
host_dx = 1000000.00000000
host_dy = 1000000.00000000
hmp2_ip_on_hmm2_ip_slope%rr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%ri = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rs = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rg = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Nr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ng = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_intrcpt%rr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%ri = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rs = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rg = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Nr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ng = 0.540000000000000
Ncnp2_on_Ncnm2 = 1.00000000000000
C_evap = 0.860000000000000
r_0 = 2.500000000000000E-005
microphys_start_time = 0.000000000000000E+000
Nc0_in_cloud = 100000000.000000
ccnconst = 120.000000000000
ccnexpnt = 0.400000005960464
aer_rm1 = 1.100000002196566E-008
aer_rm2 = 5.999999785899490E-008
aer_n1 = 125000000.000000
aer_n2 = 65000000.0000000
aer_sig1 = 1.20000004768372
aer_sig2 = 1.70000004768372
pgam_fixed = 5.00000000000000
precip_frac_calc_type = 2
--------------------------------------------------
&SILHS_setting
--------------------------------------------------
Warning: missing correlation input file(s): ../input/case_setups/fire_corr_arra
y_cloud.in and/or ../input/case_setups/fire_corr_array_below.in
The default correlation arrays will be used.
--------------------------------------------------
&radiation_setting
--------------------------------------------------
rad_scheme = simplified
sol_const = 1367.00000000000
alvdr = 0.100000000000000
alvdf = 0.100000000000000
alndr = 0.100000000000000
alndf = 0.100000000000000
radiation_top = 50000.0000000000
F0 = 74.0000000000000
F1 = 0.000000000000000E+000
kappa = 130.000000000000
gc = 0.860000000000000
omega = 0.996500000000000
slr = 1.00000000000000
l_rad_above_cloud = F
l_sw_radiation = F
l_fix_cos_solar_zen = F
l_use_default_std_atmosphere = T
Fs_values = 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
cos_solar_zen_values = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
cos_solar_zen_times = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
eff_drop_radius = 1.000000000000000E-005
--------------------------------------------------
&configurable_clubb_flags_nl
--------------------------------------------------
iiPDF_type = 1
ipdf_call_placement = 2
penta_solve_method = 1
tridiag_solve_method = 1
grid_remap_method = 1
grid_adapt_in_time_method = 0
l_use_precip_frac = T
l_predict_upwp_vpwp = T
l_ho_nontrad_coriolis = F
l_ho_trad_coriolis = F
l_min_wp2_from_corr_wx = F
l_min_xp2_from_corr_wx = T
l_C2_cloud_frac = F
l_diffuse_rtm_and_thlm = F
l_stability_correct_Kh_N2_zm = F
l_calc_thlp2_rad = T
l_upwind_xpyp_ta = T
l_upwind_xm_ma = T
l_uv_nudge = F
l_rtm_nudge = F
l_tke_aniso = T
l_vert_avg_closure = F
l_trapezoidal_rule_zt = F
l_trapezoidal_rule_zm = F
l_call_pdf_closure_twice = F
l_standard_term_ta = F
l_partial_upwind_wp3 = F
l_godunov_upwind_wpxp_ta = F
l_godunov_upwind_xpyp_ta = F
l_use_cloud_cover = F
l_diagnose_correlations = F
l_calc_w_corr = F
l_const_Nc_in_cloud = F
l_fix_w_chi_eta_correlations = T
l_stability_correct_tau_zm = F
l_damp_wp2_using_em = T
l_do_expldiff_rtm_thlm = F
l_Lscale_plume_centered = F
l_diag_Lscale_from_tau = T
l_use_C7_Richardson = T
l_use_C11_Richardson = F
l_use_shear_Richardson = F
l_brunt_vaisala_freq_moist = F
l_use_thvm_in_bv_freq = F
l_rcm_supersat_adj = T
l_damp_wp3_Skw_squared = T
l_prescribed_avg_deltaz = F
l_lmm_stepping = F
l_e3sm_config = F
l_vary_convect_depth = F
l_use_tke_in_wp3_pr_turb_term = T
l_use_tke_in_wp2_wp3_K_dfsn = F
l_use_wp3_lim_with_smth_Heaviside = F
l_smooth_Heaviside_tau_wpxp = T
l_modify_limiters_for_cnvg_test = F
l_enable_relaxed_clipping = F
l_linearize_pbl_winds = F
l_mono_flux_lim_thlm = T
l_mono_flux_lim_rtm = T
l_mono_flux_lim_um = T
l_mono_flux_lim_vm = T
l_mono_flux_lim_spikefix = T
l_host_applies_sfc_fluxes = F
l_wp2_fill_holes_tke = T
l_add_dycore_grid = F
--------------------------------------------------
git diff src/
--------------------------------------------------
See *setup.txt file in output folder
Path to sounding: fire_sounding.in
File exists? T
Path to sclr_sounding: fire_sclr_sounding.in
File exists? T
Path to edsclr_sounding: fire_edsclr_sounding.in
File exists? T
Reading in sounding information
z = 0.000000000000000E+000 690.000000000000 785.000000000000
1000.00000000000 1500.00000000000 2000.00000000000
u = 2.00000000000000 2.00000000000000 2.00000000000000
2.00000000000000 2.00000000000000 2.00000000000000
v = -4.00000000000000 -4.00000000000000 -4.00000000000000
-4.00000000000000 -4.00000000000000 -4.00000000000000
ug = 2.00000000000000 2.00000000000000 2.00000000000000
2.00000000000000 2.00000000000000 2.00000000000000
vg = -4.00000000000000 -4.00000000000000 -4.00000000000000
-4.00000000000000 -4.00000000000000 -4.00000000000000
theta = 288.000000000000 288.320000000000
294.400000000000 295.300000000000 297.350000000000
299.400000000000
rt = 8.100000000000000E-003 8.100000000000000E-003 3.500000000000000E-003
3.370000000000000E-003 3.090000000000000E-003 2.810000000000000E-003
p_in_Pa = -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000
subs = 0.000000000000000E+000 -3.450000000000000E-003 -3.925000000000000E-003
-4.999999999999999E-003 -7.500000000000000E-003 0.000000000000000E+000
stats_nsamp = 1
stats_nout = 1
When the l_diag_Lscale_from_tau flag is enabled, C2rt must have a value of 1.
C2rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2thl must have a value of 1.
C2thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rtthl must have a value of 1
.
C2rtthl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rt must have a value of 1.
C6rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rtb must have a value of 1.
C6rtb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thl must have a value of 1.
C6thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thlb must have a value of 1.
C6thlb = 2.00000000000000
Warning in check_clubb_settings_api
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CLUBB-TIMER time_loop_init = 0.0195
CLUBB-TIMER time_clubb_advance = 0.3592
CLUBB-TIMER time_clubb_pdf = 0.0002
CLUBB-TIMER time_SILHS = 0.0002
CLUBB-TIMER time_microphys_scheme = 0.0000
CLUBB-TIMER time_microphys_advance = 0.0000
CLUBB-TIMER time_loop_end = 0.0000
CLUBB-TIMER time_adapt_grid = 0.0000
CLUBB-TIMER time_total = 1.0078
Program exited normally
Wrote files with prefix 'fire' in /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/output
- fire_lh_zt.nc: 59 vars
- fire_sfc.nc: 40 vars
- fire_zm.nc: 252 vars
- fire_lh_sfc.nc: 6 vars
- fire_zt.nc: 434 vars
Skipped output files due to missing vertical grid in input:
- fire_rad_zt.nc
- fire_rad_zm.nc
- fire_nl_lh_sample_points_2D.nc
- fire_u_lh_sample_points_2D.nc
+ clubb/run_scripts/run_scm.py wangara
- using executable: /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/run_scripts/../install/latest/clubb_standalone
=================== Running wangara ===================
2026/02/18 02:45:18
--------------------------------------------------
Latest git log entry
--------------------------------------------------
A detailed git diff can be found at the end of this file
--------------------------------------------------
Tunable Parameters:
--------------------------------------------------
--------------------------------------------------
Preprocessing Directives:
--------------------------------------------------
-DNETCDF enabled
-DCOAMPS_MICRO enabled
-DTUNER disabled
-DSILHS enabled
-Dnooverlap enabled
-Draoffline enabled
-DUSE_BUGSrad_ocast_random disabled
-DBYTESWAP_IO disabled
--------------------------------------------------
&model_setting
--------------------------------------------------
runtype = wangara
nzmax = 50
grid_type = 1
deltaz = 40.0000000000000
zm_init = 0.000000000000000E+000
zm_top = 2300.00000000000
zt_grid_fname =
zm_grid_fname =
day = 15
month = 8
year = 1967
lat_vals = -34.6000000000000
lon_vals = 145.072222000000
sfc_elevation = 0.000000000000000E+000
time_initial = 82800.0000000000
time_final = 111600.000000000
dt_main = 60.0000000000000
dt_rad = 60.0000000000000
sfctype = 1
T_sfc = 288.000000000000
p_sfc = 102300.000000000
sens_ht = 0.000000000000000E+000
latent_ht = 0.000000000000000E+000
fcor = -8.210000000000000E-005
fcor_y = 1.200462079805330E-004
T0 = 300.000000000000
ts_nudge = 86400.0000000000
forcings_file_path =
l_t_dependent = T
l_ignore_forcings = T
l_modify_ic_with_cubic_int = T
l_modify_bc_for_cnvg_test = T
l_input_xpwp_sfc = F
saturation_formula = 3
thlm_sponge_damp_settings%l_sponge_damping = F
rtm_sponge_damp_settings%l_sponge_damping = F
uv_sponge_damp_settings%l_sponge_damping = F
wp2_sponge_damp_settings%l_sponge_damping = F
wp3_sponge_damp_settings%l_sponge_damping = F
up2_vp2_sponge_damp_settings%l_sponge_damping = F
thlm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
thlm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
thlm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
rtm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
rtm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
rtm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
uv_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
uv_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
uv_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp3_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp3_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp3_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
up2_vp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
l_soil_veg = F
l_restart = F
l_input_fields = F
restart_path_case = restart/wangara
time_restart = 0.000000000000000E+000
debug_level = 2
sclr_dim = 0
edsclr_dim = 0
iisclr_thl = -2
iisclr_rt = -1
iisclr_CO2 = -1
sclr_tol =
--------------------------------------------------
&stats_setting
--------------------------------------------------
l_stats = T
fname_prefix = wangara
stats_fmt = netcdf
stats_tsamp = 60.0000000000000
stats_tout = 60.0000000000000
l_allow_small_stats_tout = F
Constant flags:
l_pos_def = F
l_gamma_Skw = T
l_byteswap_io = F
Constant tolerances [units]
rt_tol [kg/kg] = 1.000000000000000E-008
thl_tol [K] = 1.000000000000000E-002
w_tol [m/s] = 2.000000000000000E-002
Parameter Value
--------- -----
C1 = 1.00000000000000000000
C1b = 1.00000000000000000000
C1c = 1.00000000000000000000
C2rt = 2.00000000000000000000
C2thl = 2.00000000000000000000
C2rtthl = 2.00000000000000000000
C4 = 2.00000000000000000000
C_uu_shr = 0.40000000000000002220
C_uu_buoy = 0.29999999999999998890
C6rt = 2.00000000000000000000
C6rtb = 2.00000000000000000000
C6rtc = 1.00000000000000000000
C6thl = 2.00000000000000000000
C6thlb = 2.00000000000000000000
C6thlc = 1.00000000000000000000
C7 = 0.50000000000000000000
C7b = 0.50000000000000000000
C7c = 0.50000000000000000000
C8 = 0.50000000000000000000
C8b = 0.02000000000000000042
C10 = 3.29999999999999982236
C11 = 0.40000000000000002220
C11b = 0.40000000000000002220
C11c = 0.50000000000000000000
C12 = 1.00000000000000000000
C13 = 0.10000000000000000555
C14 = 1.00000000000000000000
C_wp2_pr_dfsn = 0.00000000000000000000
C_wp3_pr_tp = 0.00000000000000000000
C_wp3_pr_turb = 1.00000000000000000000
C_wp3_pr_dfsn = 0.00000000000000000000
C_wp2_splat = 0.00000000000000000000
C6rt_Lscale0 = 14.00000000000000000000
C6thl_Lscale0 = 14.00000000000000000000
C7_Lscale0 = 0.84999999999999997780
wpxp_L_thresh = 60.00000000000000000000
c_K = 0.20000000000000001110
c_K1 = 0.20000000000000001110
nu1 = 20.00000000000000000000
c_K2 = 0.02500000000000000139
nu2 = 1.00000000000000000000
c_K6 = 0.37500000000000000000
nu6 = 5.00000000000000000000
c_K8 = 5.00000000000000000000
nu8 = 20.00000000000000000000
c_K9 = 0.10000000000000000555
nu9 = 10.00000000000000000000
nu10 = 0.00000000000000000000
c_K_hm = 0.75000000000000000000
c_K_hmb = 0.75000000000000000000
K_hm_min_coef = 0.10000000000000000555
nu_hm = 1.50000000000000000000
slope_coef_spread_DG_means_w = 21.00000000000000000000
pdf_component_stdev_factor_w = 1.00000000000000000000
coef_spread_DG_means_rt = 0.80000000000000004441
coef_spread_DG_means_thl = 0.80000000000000004441
gamma_coef = 0.25000000000000000000
gamma_coefb = 0.25000000000000000000
gamma_coefc = 5.00000000000000000000
mu = 0.00100000000000000002
beta = 1.00000000000000000000
lmin_coef = 0.50000000000000000000
omicron = 0.50000000000000000000
zeta_vrnce_rat = 0.00000000000000000000
upsilon_precip_frac_rat = 0.55000000000000004441
lambda0_stability_coef = 0.02999999999999999889
mult_coef = 0.50000000000000000000
taumin = 90.00000000000000000000
taumax = 3600.00000000000000000000
Lscale_mu_coef = 2.00000000000000000000
Lscale_pert_coef = 0.10000000000000000555
alpha_corr = 0.14999999999999999445
Skw_denom_coef = 4.00000000000000000000
c_K10 = 1.00000000000000000000
c_K10h = 1.00000000000000000000
thlp2_rad_coef = 1.00000000000000000000
thlp2_rad_cloud_frac_thresh = 0.10000000000000000555
up2_sfc_coef = 4.00000000000000000000
Skw_max_mag = 10.00000000000000000000
C_invrs_tau_bkgnd = 1.10000000000000008882
C_invrs_tau_sfc = 0.10000000000000000555
C_invrs_tau_shear = 0.14999999999999999445
C_invrs_tau_N2 = 0.40000000000000002220
C_invrs_tau_N2_wp2 = 0.20000000000000001110
C_invrs_tau_N2_xp2 = 0.05000000000000000278
C_invrs_tau_N2_wpxp = 0.00000000000000000000
C_invrs_tau_N2_clear_wp3 = 1.00000000000000000000
C_invrs_tau_wpxp_Ri = 0.34999999999999997780
C_invrs_tau_wpxp_N2_thresh = 0.00033000000000000000
xp3_coef_base = 0.25000000000000000000
xp3_coef_slope = 0.01000000000000000021
altitude_threshold = 100.00000000000000000000
rtp2_clip_coef = 0.50000000000000000000
Cx_min = 0.33000000000000001554
Cx_max = 0.94999999999999995559
Richardson_num_min = 0.25000000000000000000
Richardson_num_max = 400.00000000000000000000
a3_coef_min = 1.00000000000000000000
a_const = 1.80000000000000004441
bv_efold = 5.00000000000000000000
wpxp_Ri_exp = 0.50000000000000000000
z_displace = 25.00000000000000000000
--------------------------------------------------
µphysics_setting
--------------------------------------------------
microphys_scheme = none
l_cloud_sed = F
sigma_g = 1.50000000000000
l_graupel = F
l_hail = F
l_seifert_beheng = F
l_predict_Nc = F
l_const_Nc_in_cloud = F
specify_aerosol = morrison_lognormal
l_subgrid_w = T
l_arctic_nucl = F
l_cloud_edge_activation = F
l_fix_pgam = F
l_in_cloud_Nc_diff = T
l_var_covar_src = F
l_upwind_diff_sed = F
lh_microphys_type = disabled
lh_num_samples = 2
lh_sequence_length = 1
lh_seed = 5489
l_fix_w_chi_eta_correlations = T
l_silhs_KK_convergence_adj_mean = F
importance_prob_thresh = 1.000000000000000E-008
host_dx = 1000000.00000000
host_dy = 1000000.00000000
hmp2_ip_on_hmm2_ip_slope%rr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%ri = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rs = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rg = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Nr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ng = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_intrcpt%rr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%ri = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rs = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rg = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Nr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ng = 0.540000000000000
Ncnp2_on_Ncnm2 = 1.00000000000000
C_evap = 0.860000000000000
r_0 = 2.500000000000000E-005
microphys_start_time = 0.000000000000000E+000
Nc0_in_cloud = 100000000.000000
ccnconst = 120.000000000000
ccnexpnt = 0.400000005960464
aer_rm1 = 1.100000002196566E-008
aer_rm2 = 5.999999785899490E-008
aer_n1 = 125000000.000000
aer_n2 = 65000000.0000000
aer_sig1 = 1.20000004768372
aer_sig2 = 1.70000004768372
pgam_fixed = 5.00000000000000
precip_frac_calc_type = 2
--------------------------------------------------
&SILHS_setting
--------------------------------------------------
Warning: missing correlation input file(s): ../input/case_setups/wangara_corr_a
rray_cloud.in and/or ../input/case_setups/wangara_corr_array_below.in
The default correlation arrays will be used.
--------------------------------------------------
&radiation_setting
--------------------------------------------------
rad_scheme = none
sol_const = 1367.00000000000
alvdr = 0.100000000000000
alvdf = 0.100000000000000
alndr = 0.100000000000000
alndf = 0.100000000000000
radiation_top = 50000.0000000000
F0 = 100.000000000000
F1 = 20.0000000000000
kappa = 119.000000000000
gc = 0.860000000000000
omega = 0.996500000000000
slr = 1.00000000000000
l_rad_above_cloud = F
l_sw_radiation = F
l_fix_cos_solar_zen = F
l_use_default_std_atmosphere = T
Fs_values = 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
cos_solar_zen_values = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
cos_solar_zen_times = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
eff_drop_radius = 1.000000000000000E-005
--------------------------------------------------
&configurable_clubb_flags_nl
--------------------------------------------------
iiPDF_type = 1
ipdf_call_placement = 2
penta_solve_method = 1
tridiag_solve_method = 1
grid_remap_method = 1
grid_adapt_in_time_method = 0
l_use_precip_frac = T
l_predict_upwp_vpwp = T
l_ho_nontrad_coriolis = F
l_ho_trad_coriolis = F
l_min_wp2_from_corr_wx = F
l_min_xp2_from_corr_wx = T
l_C2_cloud_frac = F
l_diffuse_rtm_and_thlm = F
l_stability_correct_Kh_N2_zm = F
l_calc_thlp2_rad = F
l_upwind_xpyp_ta = T
l_upwind_xm_ma = T
l_uv_nudge = F
l_rtm_nudge = F
l_tke_aniso = T
l_vert_avg_closure = F
l_trapezoidal_rule_zt = F
l_trapezoidal_rule_zm = F
l_call_pdf_closure_twice = F
l_standard_term_ta = F
l_partial_upwind_wp3 = F
l_godunov_upwind_wpxp_ta = F
l_godunov_upwind_xpyp_ta = F
l_use_cloud_cover = F
l_diagnose_correlations = F
l_calc_w_corr = F
l_const_Nc_in_cloud = F
l_fix_w_chi_eta_correlations = T
l_stability_correct_tau_zm = F
l_damp_wp2_using_em = T
l_do_expldiff_rtm_thlm = F
l_Lscale_plume_centered = F
l_diag_Lscale_from_tau = T
l_use_C7_Richardson = T
l_use_C11_Richardson = F
l_use_shear_Richardson = F
l_brunt_vaisala_freq_moist = F
l_use_thvm_in_bv_freq = F
l_rcm_supersat_adj = T
l_damp_wp3_Skw_squared = T
l_prescribed_avg_deltaz = F
l_lmm_stepping = F
l_e3sm_config = F
l_vary_convect_depth = F
l_use_tke_in_wp3_pr_turb_term = T
l_use_tke_in_wp2_wp3_K_dfsn = F
l_use_wp3_lim_with_smth_Heaviside = F
l_smooth_Heaviside_tau_wpxp = T
l_modify_limiters_for_cnvg_test = F
l_enable_relaxed_clipping = F
l_linearize_pbl_winds = F
l_mono_flux_lim_thlm = T
l_mono_flux_lim_rtm = T
l_mono_flux_lim_um = T
l_mono_flux_lim_vm = T
l_mono_flux_lim_spikefix = T
l_host_applies_sfc_fluxes = F
l_wp2_fill_holes_tke = T
l_add_dycore_grid = F
--------------------------------------------------
git diff src/
--------------------------------------------------
See *setup.txt file in output folder
Path to sounding: wangara_sounding.in
File exists? T
Path to sclr_sounding: wangara_sclr_sounding.in
File exists? T
Path to edsclr_sounding: wangara_edsclr_sounding.in
File exists? T
Reading in sounding information
z = 0.000000000000000E+000 50.0000000000000 100.000000000000
150.000000000000 200.000000000000 250.000000000000
300.000000000000 350.000000000000 400.000000000000
500.000000000000 550.000000000000 600.000000000000
700.000000000000 750.000000000000 800.000000000000
850.000000000000 900.000000000000 950.000000000000
1000.00000000000 1100.00000000000 1200.00000000000
1300.00000000000 1400.00000000000 1500.00000000000
1600.00000000000 1700.00000000000 1800.00000000000
1900.00000000000 2000.00000000000 2100.00000000000
2200.00000000000 2300.00000000000
u = 0.000000000000000E+000 -2.84000000000000 -2.92000000000000
-2.90000000000000 -2.79000000000000 -2.79000000000000
-3.12000000000000 -3.39000000000000 -3.09000000000000
-2.49000000000000 -2.66000000000000 -2.58333333333333
-2.43000000000000 -2.42000000000000 -2.45000000000000
-2.41000000000000 -2.28000000000000 -2.29000000000000
-2.55000000000000 -2.29000000000000 -1.93000000000000
-2.10000000000000 -1.45000000000000 -1.20000000000000
-1.19000000000000 -1.49000000000000 -0.700000000000000
5.000000000000004E-002 0.500000000000000 0.500000000000000
0.500000000000000 0.500000000000000
v = 0.000000000000000E+000 3.000000000000000E-002 -0.380000000000000
-0.620000000000000 -0.570000000000000 -0.510000000000000
-0.510000000000000 -0.530000000000000 -0.476666666666667
-0.370000000000000 -0.300000000000000 -0.316666666666667
-0.350000000000000 -0.440000000000000 -0.480000000000000
-0.620000000000000 -0.760000000000000 -0.910000000000000
-1.16000000000000 -1.41000000000000 -0.900000000000000
-0.280000000000000 6.999999999999995E-002 9.000000000000000E-002
0.260000000000000 1.15000000000000 1.72000000000000
1.47000000000000 1.10000000000000 1.10000000000000
1.10000000000000 1.10000000000000
ug = -5.50000000000000 -5.36000000000000 -5.21000000000000
-5.07000000000000 -4.92000000000000 -4.78000000000000
-4.63000000000000 -4.49000000000000 -4.34333333333333
-4.05000000000000 -3.90000000000000 -3.75666666666667
-3.47000000000000 -3.32000000000000 -3.18000000000000
-3.03000000000000 -2.89000000000000 -2.74000000000000
-2.60000000000000 -2.46000000000000 -2.32000000000000
-2.18000000000000 -2.04000000000000 -1.90000000000000
-1.76000000000000 -1.62000000000000 -1.48000000000000
-1.34000000000000 -1.20000000000000 -1.20000000000000
-1.20000000000000 -1.20000000000000
vg = 0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000
theta = 276.850000000000 276.910000000000
277.680000000000 279.830000000000 280.810000000000
281.400000000000 281.680000000000 281.970000000000
281.970000000000 281.970000000000 281.970000000000
281.973333333333 281.980000000000 282.290000000000
282.620000000000 282.840000000000 283.060000000000
283.190000000000 283.620000000000 284.720000000000
285.420000000000 285.920000000000 287.170000000000
288.340000000000 288.890000000000 289.560000000000
290.570000000000 290.950000000000 291.020000000000
291.090000000000 291.160000000000 291.230000000000
rt = 4.200000000000000E-003 3.700000000000000E-003 3.500000000000000E-003
3.800000000000000E-003 3.800000000000000E-003 3.800000000000000E-003
3.700000000000000E-003 3.600000000000000E-003 3.500000000000000E-003
3.300000000000000E-003 3.200000000000000E-003 3.100000000000000E-003
2.900000000000000E-003 2.700000000000000E-003 2.500000000000000E-003
2.300000000000000E-003 2.200000000000000E-003 2.100000000000000E-003
2.000000000000000E-003 1.800000000000000E-003 1.500000000000000E-003
1.200000000000000E-003 8.000000000000000E-004 1.000000000000000E-003
8.000000000000000E-004 7.000000000000000E-004 7.000000000000000E-004
7.000000000000000E-004 5.999999999999999E-004 5.000000000000000E-004
5.000000000000000E-004 4.000000000000000E-004
p_in_Pa = -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
subs = 0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000
stats_nsamp = 1
stats_nout = 1
When the l_diag_Lscale_from_tau flag is enabled, C2rt must have a value of 1.
C2rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2thl must have a value of 1.
C2thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rtthl must have a value of 1
.
C2rtthl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rt must have a value of 1.
C6rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rtb must have a value of 1.
C6rtb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thl must have a value of 1.
C6thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thlb must have a value of 1.
C6thlb = 2.00000000000000
Warning in check_clubb_settings_api
iteration: 1 / 480 -- time = 82860.0 / 111600.0
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CLUBB-TIMER time_loop_init = 0.0420
CLUBB-TIMER time_clubb_advance = 0.8874
CLUBB-TIMER time_clubb_pdf = 0.0006
CLUBB-TIMER time_SILHS = 0.0005
CLUBB-TIMER time_microphys_scheme = 0.0000
CLUBB-TIMER time_microphys_advance = 0.0000
CLUBB-TIMER time_loop_end = 0.0000
CLUBB-TIMER time_adapt_grid = 0.0000
CLUBB-TIMER time_total = 2.5167
Program exited normally
Wrote files with prefix 'wangara' in /home/jenkins/workspace/wrf_clubb_plot_ifort/clubb/output
- wangara_lh_zt.nc: 59 vars
- wangara_sfc.nc: 40 vars
- wangara_zm.nc: 252 vars
- wangara_lh_sfc.nc: 6 vars
- wangara_zt.nc: 434 vars
Skipped output files due to missing vertical grid in input:
- wangara_rad_zt.nc
- wangara_rad_zm.nc
- wangara_nl_lh_sample_points_2D.nc
- wangara_u_lh_sample_points_2D.nc
+ mv clubb/output CLUBB
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Plot)
[Pipeline] sh
+ clubb/postprocessing/pyplotgen/pyplotgen.py -r -l --wrf WRF/test/em_quarter_ss/WRF_CLUBB --clubb CLUBB -o 07ee067
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/pub/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
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-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/wrf_clubb_plot_ifort/07ee067/index.html with a web browser
Pyplotgen ran in 12 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-02-18 02:45:39.828 proc_id: 3620227 Warning! Averaging over heights is not yet implemented.
[Pipeline] sh
+ ssh carson 'mkdir -p /home/pub/web_plots/wrf_clubb_plots/master'
[Pipeline] sh
+ scp -r 07ee067 carson:/home/pub/web_plots/wrf_clubb_plots/master
[Pipeline] sh
+ ssh carson '/home/pub/web_plots/generate_plot_directory_page.py /home/pub/web_plots/wrf_clubb_plots/'
/home/pub/web_plots/wrf_clubb_plots/ updated successfully.
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
