Started by user Peter Roels Obtained jenkins_tests/sam_clubb_build/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/sam_clubb_pgi_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/sam_clubb_pgi_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 4ae40f0b88ce93736d241cb018de65d9283edbd4 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4ae40f0b88ce93736d241cb018de65d9283edbd4 # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" > git rev-list --no-walk 4ae40f0b88ce93736d241cb018de65d9283edbd4 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/RESTART ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OBJ ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OBJ OBJ cat if ( -e /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/sam_clubb_pgi_build/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/sam_clubb_pgi_build/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/model_flags.F90; /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/error_code.F90; /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/clubb_precision.F90; /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfixed -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SIMULATORS/MISR_simulator.f -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler pgfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: error_code.o] Error 1 gmake: *** Waiting for unfinished jobs.... -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler pgfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler pgfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler pgfortran in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:698: MISR_simulator.o] Error 1 gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: model_flags.o] Error 1 gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: clubb_precision.o] Error 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE