Started by user Gunther Huebler Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/standards_fix^{commit} # timeout=10 Checking out Revision e57eec5720f3e0b1a4c828ee3b7c0f9260a466a6 (refs/remotes/origin/standards_fix) > git config core.sparsecheckout # timeout=10 > git checkout -f e57eec5720f3e0b1a4c828ee3b7c0f9260a466a6 # timeout=10 Commit message: "Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/standards_fix^{commit} # timeout=10 Checking out Revision e57eec5720f3e0b1a4c828ee3b7c0f9260a466a6 (refs/remotes/origin/standards_fix) > git config core.sparsecheckout # timeout=10 > git checkout -f e57eec5720f3e0b1a4c828ee3b7c0f9260a466a6 # timeout=10 Commit message: "Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision CMake Error at CMakeLists.txt:25 (include): include could not find requested file: VendorWarnings -- Found PkgConfig: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/pkgconf-2.2.0-5yfc5u2idq4y27sxxkurcul66iyq7axu/bin/pkg-config (found version "2.2.0") -- Checking for module 'netcdf-fortran' -- Found netcdf-fortran, version 4.5.3 -- netcdf-fortran found via pkg-config -- Include dirs: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include;/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-c-4.9.2-vfbwjy5rcwhozcnzui7joyfxgxpytu5a/include -- Libraries: netcdff -- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir CMake Error at src/Radiation/BUGSrad/CMakeLists.txt:28 (disable_compiler_warnings): Unknown CMake command "disable_compiler_warnings". -- Configuring incomplete, errors occurred! See also "/home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch/build/gcc_PRECdouble/CMakeFiles/CMakeOutput.log". Using inferred toolchain file: /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_restart_silhs_gfortran_test_branch/build/gcc_PRECdouble Running CMake configure... [91mERROR: cmake configure failed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run the restart test script with rico_silhs) Stage "Run the restart test script with rico_silhs" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE