Started by user Gunther Huebler Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_restart_gfortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_restart_gfortran_test/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart_gfortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_jenkins_agents^{commit} # timeout=10 Checking out Revision 7e8a92725def99d03368818a7d4000c0575f7365 (refs/remotes/origin/clubb_jenkins_agents) > git config core.sparsecheckout # timeout=10 > git checkout -f 7e8a92725def99d03368818a7d4000c0575f7365 # timeout=10 Commit message: "Updating model" > git rev-list --no-walk a4c3e1a51e42a64c3df19ea7189a5ae3730c5e2b # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_restart_gfortran_test_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart_gfortran_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_jenkins_agents^{commit} # timeout=10 Checking out Revision 7e8a92725def99d03368818a7d4000c0575f7365 (refs/remotes/origin/clubb_jenkins_agents) > git config core.sparsecheckout # timeout=10 > git checkout -f 7e8a92725def99d03368818a7d4000c0575f7365 # timeout=10 Commit message: "Updating model" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clean Workspace) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart_gfortran_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_jenkins_agents^{commit} # timeout=10 Checking out Revision 7e8a92725def99d03368818a7d4000c0575f7365 (refs/remotes/origin/clubb_jenkins_agents) > git config core.sparsecheckout # timeout=10 > git checkout -f 7e8a92725def99d03368818a7d4000c0575f7365 # timeout=10 Commit message: "Updating model" [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_restart_gfortran_test_branch/build/gcc_PRECdouble Running CMake configure... 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src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90-pp.f90 [470/915] Building Fortran preprocessed src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90-pp.f90 [471/915] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssterf.f.o [472/915] Building Fortran preprocessed src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90-pp.f90 [473/915] Building Fortran preprocessed src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90-pp.f90 [474/915] Generating Fortran dyndep file src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/Fortran.dd [475/915] Generating Fortran dyndep file src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/Fortran.dd [476/915] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyrk.f.o [477/915] Building Fortran preprocessed src/Input_fields/CMakeFiles/input_fields_lib.dir/input_grads.F90-pp.f90 [478/915] Building Fortran 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src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbmv.f.o [532/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlanst.f.o [533/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtts2.f.o [534/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqsy.f.o [535/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlartg.f.o [536/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarfg.f.o [537/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqgb.f.o [538/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarf.f.o [539/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlansy.f.o [540/915] Building Fortran object 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src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strsm.f.o [550/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaswp.f.o [551/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlagtm.f.o [552/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpoequ.f.o [553/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf2.f.o [554/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2l.f.o [555/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/drscl.f.o [556/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgtr.f.o [557/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsvx.f.o [558/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf.f.o [559/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dscal.f.o [560/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dswap.f.o [561/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlascl.f.o [562/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatrd.f.o [563/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyev.f.o [564/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgql.f.o [565/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/idamax.f.o [566/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ieeeck.f.o [567/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlc.f.o [568/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90-pp.f90 [569/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlr.f.o [570/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytd2.f.o [571/915] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o [572/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarft.f.o [573/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgqr.f.o [574/915] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o [575/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90-pp.f90 [576/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2.f.o [577/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90-pp.f90 [578/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90-pp.f90 [579/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90-pp.f90 [580/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlantb.f.o [581/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90-pp.f90 [582/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90-pp.f90 [583/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90-pp.f90 [584/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90-pp.f90 [585/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iparmq.f.o [586/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90-pp.f90 [587/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90-pp.f90 [588/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90-pp.f90 [589/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90-pp.f90 [590/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsymv.f.o [591/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasr.f.o [592/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90-pp.f90 [593/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90-pp.f90 [594/915] Building Fortran preprocessed src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90-pp.f90 [595/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytrd.f.o [596/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o [597/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatbs.f.o [598/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsterf.f.o [599/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ilaenv.f.o [600/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmv.f.o [601/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyrk.f.o [602/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtbsv.f.o [603/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarfb.f.o [604/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsteqr.f.o [605/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2k.f.o [606/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrsm.f.o [607/915] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmm.f.o [608/915] Linking Fortran static library src/Lapack/liblapack_lib.a [609/915] Generating Fortran dyndep file src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Fortran.dd [610/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [611/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [612/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [613/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [614/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [615/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [616/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/endian.F90:167:53: 167 | call mvbits( i_element, 56, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/endian.F90:159:39: 159 | integer(kind=int64) :: i_element_br | ^ note: 'i_element_br' declared here /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/endian.F90:123:53: 123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/endian.F90:117:69: 117 | INTEGER(KIND=int32) :: i_element_br | ^ note: 'i_element_br' declared here [617/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sigma_sqd_w_module.F90.o [618/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [619/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o [620/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/T_in_K_module.F90.o [621/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Nc_Ncn_eqns.F90.o [622/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/LY93_pdf.F90.o [623/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf.F90.o [624/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/file_functions.F90.o [625/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o [626/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/hydromet_pdf_parameter_module.F90.o [627/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [628/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [629/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [630/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/tridiag_lu_solver.F90.o [631/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o [632/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [633/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [634/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [635/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [636/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o [637/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [638/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [639/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [640/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [641/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [642/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [643/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [644/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [645/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o [646/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_pressure.F90.o [647/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o [648/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o [649/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o [650/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [651/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:1210:43: 1210 | if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:1104:15: 1104 | if(dm(i) == zero) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:185:71: 185 | *( val_below + lin_spline_rho_vals(l) )/2 | ^ Warning: 'level_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:129:17: 129 | level_below, & ! The altitude of the level or spline connection point below [m] | ^ note: 'level_below' was declared here /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:185:71: 185 | *( val_below + lin_spline_rho_vals(l) )/2 | ^ Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/remapping_module.F90:128:15: 128 | val_below, & ! The rho value of the level or spline connection point below [kg/m^3] | ^ note: 'val_below' was declared here [652/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o [653/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o [654/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/parameters_tunable.F90:438:46: 438 | write(fstderr, *) err_info%err_header(i) | ^ Warning: 'i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/parameters_tunable.F90:407:19: 407 | integer :: k, i ! loop variable | ^ note: 'i' was declared here [655/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o [656/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o [657/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o [658/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/stats_netcdf.F90:2561:73: 2561 | character(len=REG_LINE_LEN) , dimension(NML_REG_MAX_ENTRIES) :: entry | 1 Warning: Array 'entry' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [659/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o [660/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o [661/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o [662/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o [663/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o [664/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o [665/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o [666/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o [667/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o [668/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o [669/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/mixing_length.F90:637:16: 637 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= & | ^ Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/mixing_length.F90:271:42: 271 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1 | ^ note: 'dcape_dz_j' was declared here [670/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o [671/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/advance_wp2_wp3_module.F90:1869:12: 1869 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/CLUBB_core/advance_wp2_wp3_module.F90:1419:20: 1419 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [672/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o [673/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o [674/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o [675/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [676/915] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [677/915] Linking Fortran static library src/CLUBB_core/libclubb_core_lib.a [678/915] Generating Fortran dyndep file src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/Fortran.dd [679/915] Generating Fortran dyndep file src/CMakeFiles/text_writer_lib.dir/Fortran.dd [680/915] Generating Fortran dyndep file src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/Fortran.dd [681/915] Generating Fortran dyndep file src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/Fortran.dd [682/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o [683/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o [684/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o [685/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o [686/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o [687/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [688/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o [689/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa20g.F.o [690/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o [691/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o [692/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o [693/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o [694/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o [695/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o [696/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o [697/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o [698/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o [699/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o [700/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19g.F.o [701/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o [702/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o [703/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7g.F.o [704/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa6.F.o [705/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o [706/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o [707/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o [708/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa8g.F.o [709/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o [710/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o [711/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9g.F.o [712/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o [713/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esati.F.o [714/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o [715/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o [716/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9.F.o [717/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/frzh.F.o [718/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o [719/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o [720/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o [721/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o [722/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o [723/915] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [724/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o [725/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o [726/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qsatvi.F.o [727/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [728/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o [729/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o [730/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqi.F.o [731/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [732/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o [733/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o [734/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [735/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o [736/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o [737/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o [738/915] Linking Fortran static library src/libtext_writer_lib.a [739/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o [740/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o [741/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o [742/915] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o [743/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o [744/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o [745/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o [746/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o [747/915] Linking Fortran static library src/Microphys/Microphys_utils/libmicrophys_utils_lib.a [748/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o [749/915] Generating Fortran dyndep file src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/Fortran.dd [750/915] Generating Fortran dyndep file src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Fortran.dd [751/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o [752/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [753/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o [754/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o [755/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o [756/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o [757/915] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o [758/915] Linking Fortran static library src/Microphys/COAMPS_microphys/libcoamps_lib.a [759/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [760/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [761/915] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o [762/915] Linking Fortran static library src/Radiation/BUGSrad/libbugsrad_lib.a [763/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o [764/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o [765/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o [766/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o [767/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [768/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [769/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [770/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [771/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [772/915] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [773/915] Linking Fortran static library src/Microphys/KK_microphys/libKK_microphys_lib.a [774/915] Generating Fortran dyndep file src/SILHS/CMakeFiles/silhs_lib.dir/Fortran.dd [775/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [776/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [777/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [778/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [779/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [780/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [781/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [782/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o [783/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [784/915] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [785/915] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a [786/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/SILHS/latin_hypercube_driver_module.F90:1596:10: 1596 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/SILHS/latin_hypercube_driver_module.F90:1578:18: 1578 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [787/915] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [788/915] Linking Fortran static library src/SILHS/libsilhs_lib.a [789/915] Generating Fortran dyndep file src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/Fortran.dd [790/915] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd [791/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [792/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [793/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [794/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [795/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [796/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [797/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [798/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [799/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [800/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [801/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [802/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [803/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [804/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [805/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [806/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [807/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [808/915] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a [809/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [810/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [811/915] Linking Fortran static library src/Radiation/libradiation_lib.a [812/915] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd [813/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [814/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [815/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [816/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [817/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_grads.F90.o [818/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [819/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [820/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [821/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [822/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [823/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:156:13: 156 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:151:8: 151 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:157:10: 157 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:150:11: 150 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:152:7: 152 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:154:8: 154 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:153:7: 153 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:155:8: 155 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Input_fields/sounding.F90:149:7: 149 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [824/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [825/915] Linking Fortran static library src/Input_fields/libinput_fields_lib.a [826/915] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd [827/915] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd [828/915] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd [829/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [830/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [831/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [832/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [833/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Microphys/cloud_sed_module.F90:166:49: 166 | if ( zt2zm_api( gr, rcm, k ) > zero .AND. zt2zm_api( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination] [834/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [835/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [836/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Microphys/ice_dfsn_module.F90:272:25: 207 | do k = gr%nzt, 1, -1 | 2 ...... 272 | mass_ice_cryst(k-1) = mass_ice_cryst(k) & | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Microphys/ice_dfsn_module.F90:287:25: 207 | do k = gr%nzt, 1, -1 | 2 ...... 287 | mass_ice_cryst(k-1) = mass_ice_cryst(k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [837/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [838/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [839/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [840/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [841/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [842/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [843/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [844/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [845/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [846/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [847/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [848/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [849/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [850/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [851/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [852/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [853/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [854/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [855/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here [856/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o [857/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [858/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o /home/jenkins/workspace/clubb_restart_gfortran_test_branch/src/Microphys/pdf_hydromet_microphys_wrapper.F90:15:29: 15 | itime, dt_main, vert_decorr_coef, & ! In | 1 Warning: Unused dummy argument 'dt_main' at (1) [-Wunused-dummy-argument] [859/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [860/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [861/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [862/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [863/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [864/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [865/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [866/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [867/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [868/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [869/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [870/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [871/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [872/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [873/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [874/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [875/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [876/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [877/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [878/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [879/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [880/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [881/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [882/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [883/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [884/915] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a [885/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [886/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [887/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [888/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [889/915] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a [890/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [891/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [892/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [893/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [894/915] Linking Fortran static library src/Microphys/libmicrophys_lib.a [895/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd [896/915] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd [897/915] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [898/915] Linking Fortran executable src/G_unit_tests [899/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [900/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o [901/915] Linking Fortran static library src/libclubb_driver_lib.a [902/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd [903/915] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd [904/915] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd [905/915] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd [906/915] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [907/915] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [908/915] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [909/915] Linking Fortran executable src/clubb_thread_test [910/915] Linking Fortran executable src/clubb_driver_test [911/915] Linking Fortran executable src/clubb_standalone [912/915] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [913/915] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [914/915] Linking Fortran executable src/clubb_tuner [914/915] Install the project... -- Install configuration: "Release" -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart_gfortran_test_branch/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [92mBuild completed successfully, and all source code checks passed.[0m [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run the CLUBB restart test script) [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 run_scripts/run_restart_test.py bomex Running standard bomex case... Done! Running restart bomex case from halfway point... Done! Results not bit-for-bit! [Pipeline] } ERROR: script returned exit code 1 Setting overall build result to FAILURE [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Failure Report) [Pipeline] withCredentials Masking supported pattern matches of $OPENAI_API_KEY [Pipeline] { [Pipeline] sh + jenkins_tests/llm_failure_analysis/analyze_failure.py --job clubb_restart_gfortran_test_branch --build 19 --build-url http://carson.math.uwm.edu/jenkins/job/clubb_restart_gfortran_test_branch/19/ --workspace /home/jenkins/workspace/clubb_restart_gfortran_test_branch --out llm_failure_analysis.md Wrote failure analysis report to llm_failure_analysis.md [Pipeline] } [Pipeline] // withCredentials [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] sh + sed -n 1,240p llm_failure_analysis.md # Failure Analysis ```markdown # Failure Analysis ## Summary The Jenkins job **`clubb_restart_gfortran_test_branch` build 19** failed in the **restart comparison stage**, not during compilation. ## Evidence - The build and source checks completed successfully: - `Build completed successfully, and all source code checks passed.` - The failing stage was: - `Run the CLUBB restart test script` - The restart script output was: - `Running standard bomex case... Done!` - `Running restart bomex case from halfway point... Done!` - `Results not bit-for-bit!` - Jenkins then reported: - `ERROR: script returned exit code 1` - `Setting overall build result to FAILURE` ## Root Cause The failure is a **bit-for-bit mismatch between the standard BOMEX run and the restarted BOMEX run**. This is consistent with a restart regression, not a build or test harness crash. ## Notes - The compiler warnings shown earlier in the log did **not** stop the build and should not be treated as the root cause. - The workspace also contains an untracked file: - `run_scripts/fort.10` This may be relevant if the restart test script writes or reuses runtime state, but the console log alone only proves a BFB mismatch. ## Recommended Next Steps 1. Compare the standard and restart BOMEX outputs to identify the first divergent timestep/variable. 2. Inspect `run_scripts/run_restart_test.py` and any restart-file handling for BOMEX. 3. Check whether the recent change in `jenkins_tests/llm_failure_analysis/analyze_failure.py` or the recent model/script updates altered restart behavior. ``` ## Analysis Metadata - Job: `clubb_restart_gfortran_test_branch` - Build: `19` - Build URL: http://carson.math.uwm.edu/jenkins/job/clubb_restart_gfortran_test_branch/19/ - Tool rounds: `1` --- Generated by `analyze_failure.py` in 5.5s. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: FAILURE