Console Output

Download View as plain text
Started by an SCM change
Obtained jenkins_tests/clubb_release_intel_build/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/clubb_release_intel_build
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_release_intel_build # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision fb12cc1c0be895d2db030ceed981bc5121277b0e (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f fb12cc1c0be895d2db030ceed981bc5121277b0e # timeout=10
Commit message: "The last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0"
 > git rev-list --no-walk 73dc365c77ab4bf2405d753f167307ae9be330a0 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Clubb_Release)
[Pipeline] sh
+ git clone https://github.com/larson-group/clubb_release.git
Cloning into 'clubb_release'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile Clubb Release )
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ clubb_release/compile.py
-- The Fortran compiler identification is IntelLLVM 2023.2.0
-- The C compiler identification is IntelLLVM 2023.2.0
-- The CXX compiler identification is IntelLLVM 2023.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/ifx - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/icx - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-fmyvemnurthfcavvd7ujk6wskls73vdp/compiler/2023.2.0/linux/bin/icpx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
--   -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so
--   -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    NetCDF_C_INCLUDE_DIR
    NetCDF_C_LIBRARY
    NetCDF_Fortran_INCLUDE_DIR
    NetCDF_Fortran_LIBRARY


-- Build files have been written to: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/build/intel_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/cmake/toolchains/linux_x86_64_intel.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/build/intel_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_release_intel_build/clubb_release/build/intel_PRECdouble
Running CMake configure...
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/home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/CLUBB_core/advance_windm_edsclrm_module.F90(50): remark #7712: This variable has not been used.   [ORDER_XP2_XPYP]
                                    order_xp2_xpyp, order_wp2_wp3, order_windm, &
------------------------------------^
/home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/CLUBB_core/advance_windm_edsclrm_module.F90(50): remark #7712: This variable has not been used.   [ORDER_WP2_WP3]
                                    order_xp2_xpyp, order_wp2_wp3, order_windm, &
----------------------------------------------------^
/home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/CLUBB_core/advance_windm_edsclrm_module.F90(50): remark #7712: This variable has not been used.   [ORDER_WINDM]
                                    order_xp2_xpyp, order_wp2_wp3, order_windm, &
-------------------------------------------------------------------^
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/home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/SILHS/silhs_importance_sample_module.F90(901): warning #5462: Global name too long, shortened from: silhs_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER to: s_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER
      num_categories_in_cluster = (/ 1, 1, 1, 1, 1, 1, 1, 1 /)
------^
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/home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/Microphys/pdf_hydromet_microphys_wrapper.F90(15): remark #7712: This variable has not been used.   [DT_MAIN]
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[859/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[860/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[861/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[862/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[863/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[864/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[865/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[866/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[867/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[868/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[869/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[870/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[871/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[872/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[873/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[874/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[875/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[876/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[877/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[878/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[879/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[880/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[881/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[882/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[883/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[884/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[885/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[886/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[887/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[888/915] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[889/915] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[890/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[891/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[892/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[893/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[894/915] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[895/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[896/915] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd
[897/915] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[898/915] Linking Fortran executable src/G_unit_tests
[899/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[900/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[901/915] Linking Fortran static library src/libclubb_driver_lib.a
[902/915] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd
[903/915] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd
[904/915] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[905/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[906/915] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[907/915] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[908/915] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[909/915] Linking Fortran executable src/clubb_standalone
[910/915] Linking Fortran executable src/clubb_thread_test
[911/915] Linking Fortran executable src/clubb_driver_test
[912/915] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[913/915] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[914/915] Linking Fortran executable src/clubb_tuner
[914/915] Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
-- Installing: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib:/home/jenkins/workspace/clubb_release_intel_build/clubb_release/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
--------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/src/CLUBB_core/advance_clubb_core_module.F90 ---------------------
WARNING: Unused names imported by 'use ..., only:' found:
line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd
----------------------------------------------------------------------------------------------------
FAIL: 1 check(s) failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[91m===============================================================
[91mCLUBBStandardsCheck FAILED
[91m  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES
[91m  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!
[91m  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE
[91m  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_release_intel_build/clubb_release/build/intel_PRECdouble/cmake_build_output.txt
[91m===============================================================[0m

[93mBuild completed successfully, but some source code checks have failed.[0m
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run)
[Pipeline] sh
+ clubb_release/run_scripts/run_scm_all.py
Performing standard run
Using 8 process(es)
Cases to run: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara
COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- arm
COMPLETE -- clex9_nov02
COMPLETE -- dycoms2_rf01
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- cgils_s12
COMPLETE -- cgils_s11
COMPLETE -- fire
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- cgils_s6
COMPLETE -- astex_a209
COMPLETE -- gabls3_night
COMPLETE -- jun25_altocu
COMPLETE -- mpace_b
COMPLETE -- lba
COMPLETE -- mpace_b_silhs
COMPLETE -- gabls3
COMPLETE -- nov11_altocu
COMPLETE -- gabls2
COMPLETE -- rico
COMPLETE -- rico_silhs
COMPLETE -- wangara
COMPLETE -- twp_ice
COMPLETE -- mpace_a
COMPLETE -- arm_97
COMPLETE -- mc3e

=================== Runs Complete ===================
All cases ran to completion.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS