Started by an SCM change Obtained jenkins_tests/clubb_nvhpc_debug_build/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/clubb_nvhpc_debug_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_nvhpc_debug_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision fb12cc1c0be895d2db030ceed981bc5121277b0e (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 Commit message: "The last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0" > git checkout -f fb12cc1c0be895d2db030ceed981bc5121277b0e # timeout=10 > git rev-list --no-walk 73dc365c77ab4bf2405d753f167307ae9be330a0 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -- Configuring for CPU build -- Configuring for CPU build -- The Fortran compiler identification is NVHPC 24.3.0 -- The C compiler identification is NVHPC 24.3.0 -- The CXX compiler identification is NVHPC 24.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY -- Build files have been written to: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_nvhpc_debug_build/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Running CMake configure... 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object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [ 96%] Linking Fortran static library libG_unit_test_lib.a [ 96%] Built target G_unit_test_lib [ 96%] Linking Fortran static library libbenchmark_cases_lib.a [ 96%] Built target benchmark_cases_lib [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 97%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 98%] Linking Fortran static library libmicrophys_lib.a [ 98%] Built target microphys_lib Scanning dependencies of target G_unit_tests Scanning dependencies of target clubb_driver_lib [ 98%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 99%] Linking Fortran executable G_unit_tests [ 99%] Built target G_unit_tests [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o [ 99%] Linking Fortran static library libclubb_driver_lib.a [ 99%] Built target clubb_driver_lib Scanning dependencies of target clubb_thread_test Scanning dependencies of target clubb_driver_test Scanning dependencies of target clubb_tuner Scanning dependencies of target clubb_standalone [100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Linking Fortran executable clubb_standalone [100%] Built target clubb_thread_test [100%] Built target clubb_driver_test [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_standalone [100%] Built target clubb_tuner Install the project... -- Install configuration: "Debug" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_nvhpc_debug_build/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [91m=============================================================== [91mCLUBBStandardsCheck FAILED [91m THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES [91m AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME! [91m IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE [91m LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble/cmake_build_output.txt [91m===============================================================[0m [93mBuild completed successfully, but some source code checks have failed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + ulimit -s 8388608 + run_scripts/run_scm_all.py Performing standard run Using 8 process(es) Cases to run: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara COMPLETE -- bomex COMPLETE -- atex COMPLETE -- arm COMPLETE -- clex9_nov02 COMPLETE -- dycoms2_rf01_fixed_sst COMPLETE -- dycoms2_rf01 COMPLETE -- clex9_oct14 COMPLETE -- dycoms2_rf02_nd COMPLETE -- cgils_s12 COMPLETE -- cgils_s11 COMPLETE -- dycoms2_rf02_do COMPLETE -- fire COMPLETE -- dycoms2_rf02_so COMPLETE -- astex_a209 COMPLETE -- cgils_s6 COMPLETE -- dycoms2_rf02_ds COMPLETE -- gabls3_night COMPLETE -- jun25_altocu COMPLETE -- mpace_b COMPLETE -- mpace_b_silhs COMPLETE -- nov11_altocu COMPLETE -- lba COMPLETE -- gabls3 COMPLETE -- rico COMPLETE -- wangara COMPLETE -- rico_silhs COMPLETE -- gabls2 COMPLETE -- twp_ice COMPLETE -- mpace_a COMPLETE -- arm_97 COMPLETE -- mc3e =================== Runs Complete =================== All cases ran to completion. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS