Started by an SCM change Obtained jenkins_tests/clubb_nvhpc_debug_build/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/clubb_nvhpc_debug_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_nvhpc_debug_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 4f132e2cf1bea29284b46b82a0b5006a2b23249a (refs/remotes/origin/master) Commit message: "Update JAX conversion plan for clarity and detail" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 4f132e2cf1bea29284b46b82a0b5006a2b23249a # timeout=10 > git rev-list --no-walk fb12cc1c0be895d2db030ceed981bc5121277b0e # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -- Configuring for CPU build -- Configuring for CPU build -- The Fortran compiler identification is NVHPC 24.3.0 -- The C compiler identification is NVHPC 24.3.0 -- The CXX compiler identification is NVHPC 24.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY -- Build files have been written to: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_nvhpc_debug_build/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble Running CMake configure... 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Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_debug_build/src/G_unit_test_types/pdf_parameter_tests.F90: 428) [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [ 95%] Building Fortran object 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static library libbenchmark_cases_lib.a [ 96%] Built target benchmark_cases_lib [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 97%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 98%] Linking Fortran static library libmicrophys_lib.a [ 98%] Built target microphys_lib Scanning dependencies of target G_unit_tests Scanning dependencies of target clubb_driver_lib [ 98%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 99%] Linking Fortran executable G_unit_tests [ 99%] Built target G_unit_tests [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o [ 99%] Linking Fortran static library libclubb_driver_lib.a [ 99%] Built target clubb_driver_lib Scanning dependencies of target clubb_thread_test Scanning dependencies of target clubb_driver_test Scanning dependencies of target clubb_tuner [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o Scanning dependencies of target clubb_standalone [100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [100%] Linking Fortran executable clubb_driver_test [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_standalone [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Built target clubb_driver_test [100%] Built target clubb_thread_test [100%] Built target clubb_standalone [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: "Debug" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_nvhpc_debug_build/install/nvhpc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-mgzln5dterhzvueatfeyc3v4ujcl4nds/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_nvhpc_debug_build/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [91m=============================================================== [91mCLUBBStandardsCheck FAILED [91m THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES [91m AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME! [91m IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE [91m LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_nvhpc_debug_build/build/nvhpc_DEBUG_PRECdouble/cmake_build_output.txt [91m===============================================================[0m [93mBuild completed successfully, but some source code checks have failed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + ulimit -s 8388608 + run_scripts/run_scm_all.py Performing standard run Using 8 process(es) Cases to run: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara COMPLETE -- bomex COMPLETE -- atex COMPLETE -- arm COMPLETE -- clex9_nov02 COMPLETE -- dycoms2_rf01_fixed_sst COMPLETE -- dycoms2_rf01 COMPLETE -- clex9_oct14 COMPLETE -- dycoms2_rf02_nd COMPLETE -- cgils_s12 COMPLETE -- dycoms2_rf02_do COMPLETE -- cgils_s11 COMPLETE -- fire COMPLETE -- dycoms2_rf02_so COMPLETE -- astex_a209 COMPLETE -- cgils_s6 COMPLETE -- dycoms2_rf02_ds COMPLETE -- gabls3_night COMPLETE -- jun25_altocu COMPLETE -- mpace_b COMPLETE -- mpace_b_silhs COMPLETE -- nov11_altocu COMPLETE -- gabls3 COMPLETE -- lba COMPLETE -- wangara COMPLETE -- rico COMPLETE -- rico_silhs COMPLETE -- gabls2 COMPLETE -- twp_ice COMPLETE -- mpace_a COMPLETE -- arm_97 COMPLETE -- mc3e =================== Runs Complete =================== All cases ran to completion. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS