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Started by an SCM change Lightweight checkout support not available, falling back to full checkout. Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_error_handling_test@script to read jenkins_tests/clubb_error_handling_test/Jenkinsfile The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_error_handling_test@script # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Seen branch in repository origin/20141204_Rasch_et_al_2019_paper Seen branch in repository origin/Brian_newest_pdf Seen branch in repository origin/Brian_special_input_fields_r7465 Seen branch in repository origin/CLUBB_subcol_SILHS_UWM Seen branch in repository origin/Hydromet_PDF_shapes Seen branch in repository origin/I881 Seen branch in repository origin/MCVS Seen branch in repository origin/SILHS_flex_importance_sampling_paper_v2 Seen branch in repository origin/SILHS_flex_importance_sampling_paper_wc Seen branch in repository origin/cam_ticket_59 Seen branch in repository origin/clubb_704_plotgen Seen branch in repository origin/clubb_E3SM_SILHS_branch_merge Seen branch in repository origin/clubb_E3SM_master Seen branch in repository origin/clubb_E3SM_silhs Seen branch in repository origin/clubb_r7416_special_unit_testing Seen branch in repository origin/cpt_ticket86_r5785 Seen branch in repository origin/esrl_tak_16June2013_clubb Seen branch in repository origin/eval_new_PDF_w_input_fields Seen branch in repository origin/gfdl_clubb_r4603 Seen branch in repository origin/gfdl_clubb_r4613 Seen branch in repository origin/gfdl_clubb_r4621 Seen branch in repository origin/gfdl_clubb_r4983 Seen branch in repository origin/gfdl_clubb_r5241 Seen branch in repository origin/gfdl_clubb_r5445 Seen branch in repository origin/gfdl_clubb_r5868 Seen branch in repository origin/input_wp2tke Seen branch in repository origin/master Seen branch in repository origin/microphys_src_var_covar_r8025 Seen branch in repository origin/ncar_branches Seen branch in repository origin/prog_mom_flux_paper Seen branch in repository origin/reorder_advance_clubb_core Seen branch in repository origin/stats_addition Seen branch in repository origin/storer_et_al_paper_clubb Seen branch in repository origin/ticket114 Seen branch in repository origin/ticket365 Seen branch in repository origin/ticket770 Seen branch in repository origin/ticket_624_nostats Seen branch in repository origin/ticket_634 Seen branch in repository origin/ticket_697_precip_weighted Seen branch in repository origin/ticket_740_mconly Seen branch in repository origin/ticket_740_multseed Seen branch in repository origin/ticket_740_newscheme Seen branch in repository origin/ticket_769_silhs_no_dp Seen branch in repository origin/ticket_793 Seen branch in repository origin/ticket_805 Seen branch in repository origin/ucar_branches Seen branch in repository origin/upwp_coefs Seen branch in repository origin/wp2_pr_dfsn Seen branch in repository origin/zhun_clubb_tau_test Seen 49 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 6b03a707a3fef05054ecf0d12aef562f683a45f6 (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b03a707a3fef05054ecf0d12aef562f683a45f6 # timeout=10 Commit message: "Improving error messages in setup_clubb_core. larson-group/e3sm#38" > git rev-list --no-walk b877d82325b1a893de74a7451e3cf88556ebd268 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_error_handling_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_error_handling_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Seen branch in repository origin/20141204_Rasch_et_al_2019_paper Seen branch in repository origin/Brian_newest_pdf Seen branch in repository origin/Brian_special_input_fields_r7465 Seen branch in repository origin/CLUBB_subcol_SILHS_UWM Seen branch in repository origin/Hydromet_PDF_shapes Seen branch in repository origin/I881 Seen branch in repository origin/MCVS Seen branch in repository origin/SILHS_flex_importance_sampling_paper_v2 Seen branch in repository origin/SILHS_flex_importance_sampling_paper_wc Seen branch in repository origin/cam_ticket_59 Seen branch in repository origin/clubb_704_plotgen Seen branch in repository origin/clubb_E3SM_SILHS_branch_merge Seen branch in repository origin/clubb_E3SM_master Seen branch in repository origin/clubb_E3SM_silhs Seen branch in repository origin/clubb_r7416_special_unit_testing Seen branch in repository origin/cpt_ticket86_r5785 Seen branch in repository origin/esrl_tak_16June2013_clubb Seen branch in repository origin/eval_new_PDF_w_input_fields Seen branch in repository origin/feeding_gr_to_host Seen branch in repository origin/gfdl_clubb_r4603 Seen branch in repository origin/gfdl_clubb_r4613 Seen branch in repository origin/gfdl_clubb_r4621 Seen branch in repository origin/gfdl_clubb_r4983 Seen branch in repository origin/gfdl_clubb_r5241 Seen branch in repository origin/gfdl_clubb_r5445 Seen branch in repository origin/gfdl_clubb_r5868 Seen branch in repository origin/grid_fixes Seen branch in repository origin/input_wp2tke Seen branch in repository origin/master Seen branch in repository origin/microphys_src_var_covar_r8025 Seen branch in repository origin/ncar_branches Seen branch in repository origin/prog_mom_flux_paper Seen branch in repository origin/reorder_advance_clubb_core Seen branch in repository origin/stats_addition Seen branch in repository origin/storer_et_al_paper_clubb Seen branch in repository origin/ticket114 Seen branch in repository origin/ticket365 Seen branch in repository origin/ticket770 Seen branch in repository origin/ticket_624_nostats Seen branch in repository origin/ticket_634 Seen branch in repository origin/ticket_697_precip_weighted Seen branch in repository origin/ticket_740_mconly Seen branch in repository origin/ticket_740_multseed Seen branch in repository origin/ticket_740_newscheme Seen branch in repository origin/ticket_769_silhs_no_dp Seen branch in repository origin/ticket_793 Seen branch in repository origin/ticket_805 Seen branch in repository origin/ucar_branches Seen branch in repository origin/upwp_coefs Seen branch in repository origin/wp2_pr_dfsn Seen branch in repository origin/zhun_clubb_tau_test Seen 51 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 6b03a707a3fef05054ecf0d12aef562f683a45f6 (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 6b03a707a3fef05054ecf0d12aef562f683a45f6 # timeout=10 Commit message: "Improving error messages in setup_clubb_core. larson-group/e3sm#38" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run test_fatal_error_handling) [Pipeline] dir Running in /home/jenkins/workspace/clubb_error_handling_test/run_scripts [Pipeline] { [Pipeline] sh + ./test_fatal_error_handling.bash ......................................................................................................................................................................... Make.clubb_lapack is ready. ............................................................................... Make.clubb_param is ready. ......................... Make.clubb_bugsrad is ready. ... Make.microphys_utils is ready. ..... Make.clubb_parabolic is ready. .............. Make.clubb_KK_microphys is ready. ................................................. Make.clubb_coamps is ready. ... Make.clubb_morrison is ready. ... Make.clubb_gfdlact is ready. ............. Make.silhs is ready. ................................................................. Make.clubb_other is ready. ... Make.clubb_standalone is ready. ... Make.clubb_thread_test is ready. ............ Make.clubb_tuner is ready. ... Make.jacobian is ready. ............. Make.G_unit_tests is ready. ... Make.int2txt is ready. cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_param cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_gfdlact make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90 /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/clubb_api_module.F90 ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_param.a mono_flux_limiter.o pdf_closure_module.o clubb_api_module.o Nc_Ncn_eqns.o stats_lh_zt_module.o adg1_adg2_3d_luhar_pdf.o calc_pressure.o advance_clubb_core_module.o interpolation.o error_code.o output_grads.o saturation.o hydromet_pdf_parameter_module.o stats_type.o index_mapping.o diffusion.o calendar.o parameters_model.o advance_wp2_wp3_module.o stats_rad_zm_module.o stats_clubb_utilities.o stats_sfc_module.o advance_helper_module.o fill_holes.o sfc_varnce_module.o stat_file_module.o corr_varnce_module.o numerical_check.o diagnose_correlations_module.o parameters_tunable.o output_netcdf.o constants_clubb.o sponge_layer_damping.o stats_rad_zt_module.o new_tsdadg_pdf.o mean_adv.o stats_variables.o input_reader.o advance_xp3_module.o array_index.o model_flags.o input_names.o code_timer_module.o new_hybrid_pdf_main.o lapack_wrap.o Skx_module.o LY93_pdf.o advance_windm_edsclrm_module.o stats_zm_module.o pos_definite_module.o grid_class.o precipitation_fraction.o pdf_utilities.o T_in_K_module.o stats_zt_module.o file_functions.o advance_xm_wpxp_module.o mixing_length.o lapack_interfaces.o clubb_precision.o calc_roots.o endian.o mt95.o new_hybrid_pdf.o setup_clubb_pdf_params.o clip_semi_implicit.o advance_xp2_xpyp_module.o matrix_operations.o parameter_indices.o turbulent_adv_pdf.o stats_lh_sfc_module.o clip_explicit.o new_pdf_main.o new_pdf.o stats_type_utilities.o pdf_parameter_module.o sigma_sqd_w_module.o r - mono_flux_limiter.o r - pdf_closure_module.o r - clubb_api_module.o r - Nc_Ncn_eqns.o r - stats_lh_zt_module.o r - adg1_adg2_3d_luhar_pdf.o r - calc_pressure.o r - advance_clubb_core_module.o r - interpolation.o r - error_code.o r - output_grads.o r - saturation.o r - hydromet_pdf_parameter_module.o r - stats_type.o r - index_mapping.o r - diffusion.o r - calendar.o r - parameters_model.o r - advance_wp2_wp3_module.o r - stats_rad_zm_module.o r - stats_clubb_utilities.o r - stats_sfc_module.o r - advance_helper_module.o r - fill_holes.o r - sfc_varnce_module.o r - stat_file_module.o r - corr_varnce_module.o r - numerical_check.o r - diagnose_correlations_module.o r - parameters_tunable.o r - output_netcdf.o r - constants_clubb.o r - sponge_layer_damping.o r - stats_rad_zt_module.o r - new_tsdadg_pdf.o r - mean_adv.o r - stats_variables.o r - input_reader.o r - advance_xp3_module.o r - array_index.o r - model_flags.o r - input_names.o r - code_timer_module.o r - new_hybrid_pdf_main.o r - lapack_wrap.o r - Skx_module.o r - LY93_pdf.o r - advance_windm_edsclrm_module.o r - stats_zm_module.o r - pos_definite_module.o r - grid_class.o r - precipitation_fraction.o r - pdf_utilities.o r - T_in_K_module.o r - stats_zt_module.o r - file_functions.o r - advance_xm_wpxp_module.o r - mixing_length.o r - lapack_interfaces.o r - clubb_precision.o r - calc_roots.o r - endian.o r - mt95.o r - new_hybrid_pdf.o r - setup_clubb_pdf_params.o r - clip_semi_implicit.o r - advance_xp2_xpyp_module.o r - matrix_operations.o r - parameter_indices.o r - turbulent_adv_pdf.o r - stats_lh_sfc_module.o r - clip_explicit.o r - new_pdf_main.o r - new_pdf.o r - stats_type_utilities.o r - pdf_parameter_module.o r - sigma_sqd_w_module.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_lapack make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_bugsrad cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.microphys_utils make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_parabolic make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_coamps make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_morrison make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_KK_microphys make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -c ../src/Morrison_microphys/module_mp_graupel.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.silhs make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_morrison.a module_mp_graupel.o r - module_mp_graupel.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_other make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/morrison_microphys_module.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/microphys_init_cleanup.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/microphys_driver.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/clubb_driver.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/error.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c -I../src ../src/enhanced_simann.F90 ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_other.a arm_97.o cloud_feedback.o parameters_microphys.o silhs_category_variance_module.o gabls2.o error.o clex9_oct14.o ice_dfsn_module.o wangara.o stat_file_utils.o clubb_model_settings.o lba.o jun25.o spec_hum_to_mixing_ratio.o arm.o mixed_moment_PDF_integrals.o microphys_driver.o clex9_nov02.o arm_0003.o enhanced_simann.o extended_atmosphere_module.o clubb_driver.o input_grads.o gfdl_activation.o extrapolation.o fire.o input_netcdf.o mpace_a.o bomex.o coamps_microphys_driver_module.o rico.o rad_lwsw_module.o bugsrad_driver.o cloud_sed_module.o sounding.o time_dependent_input.o morrison_microphys_module.o gabls3.o simple_rad_module.o estimate_scm_microphys_module.o quicksort.o gabls3_night.o astex_a209.o dycoms2_rf02.o twp_ice.o advance_microphys_module.o atex.o lh_microphys_driver_module.o hydrostatic_module.o mpace_b.o KK_microphys_module.o soil_vegetation.o arm_3year.o parameters_radiation.o microphys_init_cleanup.o diag_ustar_module.o input_interpret.o sfc_flux.o cobra.o input_fields.o dycoms2_rf01.o nov11.o cos_solar_zen_module.o r - arm_97.o r - cloud_feedback.o r - parameters_microphys.o r - silhs_category_variance_module.o r - gabls2.o r - error.o r - clex9_oct14.o r - ice_dfsn_module.o r - wangara.o r - stat_file_utils.o r - clubb_model_settings.o r - lba.o r - jun25.o r - spec_hum_to_mixing_ratio.o r - arm.o r - mixed_moment_PDF_integrals.o r - microphys_driver.o r - clex9_nov02.o r - arm_0003.o r - enhanced_simann.o r - extended_atmosphere_module.o r - clubb_driver.o r - input_grads.o r - gfdl_activation.o r - extrapolation.o r - fire.o r - input_netcdf.o r - mpace_a.o r - bomex.o r - coamps_microphys_driver_module.o r - rico.o r - rad_lwsw_module.o r - bugsrad_driver.o r - cloud_sed_module.o r - sounding.o r - time_dependent_input.o r - morrison_microphys_module.o r - gabls3.o r - simple_rad_module.o r - estimate_scm_microphys_module.o r - quicksort.o r - gabls3_night.o r - astex_a209.o r - dycoms2_rf02.o r - twp_ice.o r - advance_microphys_module.o r - atex.o r - lh_microphys_driver_module.o r - hydrostatic_module.o r - mpace_b.o r - KK_microphys_module.o r - soil_vegetation.o r - arm_3year.o r - parameters_radiation.o r - microphys_init_cleanup.o r - diag_ustar_module.o r - input_interpret.o r - sfc_flux.o r - cobra.o r - input_fields.o r - dycoms2_rf01.o r - nov11.o r - cos_solar_zen_module.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_standalone cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_tuner cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.jacobian cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.G_unit_tests cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.int2txt make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/G_unit_test_types/tuner_tests.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -c ../src/clubb_tuner.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/jacobian.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/clubb_standalone.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_thread_test gfortran clubb_standalone.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_standalone -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/clubb_thread_test.F90 gfortran clubb_thread_test.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_thread_test -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/G_unit_tests.F90 gfortran mu_sigma_hm_tests.o tuner_tests.o hole_filling_tests.o KK_integrals_tests.o spurious_source_test.o silhs_category_test.o corr_cholesky_mtx_tests.o G_unit_tests.o pdf_parameter_tests.o Nc_Ncn_test.o read_corr_mtx_test.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/G_unit_tests -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran ran_state.o amoeba.o ran1_v.o nrtype.o amebsa.o nr.o nrutil.o clubb_tuner.o ran1_s.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_tuner -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff gfortran jacobian.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/jacobian -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' python ../utilities/check_for_missing_threadprivate.py ../src/CLUBB_core/ ../src/SILHS/ check_for_missing_threadprivate.py has begun. check_for_missing_threadprivate.py passed. perl ../utilities/CLUBBStandardsCheck.pl ../src/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/CLUBB_core/*.F90 CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3260 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/Benchmark_cases/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. ......................................................................................................................................................................... Make.clubb_lapack is ready. ............................................................................... Make.clubb_param is ready. ......................... Make.clubb_bugsrad is ready. ... Make.microphys_utils is ready. ..... Make.clubb_parabolic is ready. .............. Make.clubb_KK_microphys is ready. ................................................. Make.clubb_coamps is ready. ... Make.clubb_morrison is ready. ... Make.clubb_gfdlact is ready. ............. Make.silhs is ready. ................................................................. Make.clubb_other is ready. ... Make.clubb_standalone is ready. ... Make.clubb_thread_test is ready. ............ Make.clubb_tuner is ready. ... Make.jacobian is ready. ............. Make.G_unit_tests is ready. ... Make.int2txt is ready. cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_param cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_gfdlact make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90 /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/clubb_error_handling_test/compile/../src/CLUBB_core/clubb_api_module.F90 ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_param.a mono_flux_limiter.o pdf_closure_module.o clubb_api_module.o Nc_Ncn_eqns.o stats_lh_zt_module.o adg1_adg2_3d_luhar_pdf.o calc_pressure.o advance_clubb_core_module.o interpolation.o error_code.o output_grads.o saturation.o hydromet_pdf_parameter_module.o stats_type.o index_mapping.o diffusion.o calendar.o parameters_model.o advance_wp2_wp3_module.o stats_rad_zm_module.o stats_clubb_utilities.o stats_sfc_module.o advance_helper_module.o fill_holes.o sfc_varnce_module.o stat_file_module.o corr_varnce_module.o numerical_check.o diagnose_correlations_module.o parameters_tunable.o output_netcdf.o constants_clubb.o sponge_layer_damping.o stats_rad_zt_module.o new_tsdadg_pdf.o mean_adv.o stats_variables.o input_reader.o advance_xp3_module.o array_index.o model_flags.o input_names.o code_timer_module.o new_hybrid_pdf_main.o lapack_wrap.o Skx_module.o LY93_pdf.o advance_windm_edsclrm_module.o stats_zm_module.o pos_definite_module.o grid_class.o precipitation_fraction.o pdf_utilities.o T_in_K_module.o stats_zt_module.o file_functions.o advance_xm_wpxp_module.o mixing_length.o lapack_interfaces.o clubb_precision.o calc_roots.o endian.o mt95.o new_hybrid_pdf.o setup_clubb_pdf_params.o clip_semi_implicit.o advance_xp2_xpyp_module.o matrix_operations.o parameter_indices.o turbulent_adv_pdf.o stats_lh_sfc_module.o clip_explicit.o new_pdf_main.o new_pdf.o stats_type_utilities.o pdf_parameter_module.o sigma_sqd_w_module.o r - mono_flux_limiter.o r - pdf_closure_module.o r - clubb_api_module.o r - Nc_Ncn_eqns.o r - stats_lh_zt_module.o r - adg1_adg2_3d_luhar_pdf.o r - calc_pressure.o r - advance_clubb_core_module.o r - interpolation.o r - error_code.o r - output_grads.o r - saturation.o r - hydromet_pdf_parameter_module.o r - stats_type.o r - index_mapping.o r - diffusion.o r - calendar.o r - parameters_model.o r - advance_wp2_wp3_module.o r - stats_rad_zm_module.o r - stats_clubb_utilities.o r - stats_sfc_module.o r - advance_helper_module.o r - fill_holes.o r - sfc_varnce_module.o r - stat_file_module.o r - corr_varnce_module.o r - numerical_check.o r - diagnose_correlations_module.o r - parameters_tunable.o r - output_netcdf.o r - constants_clubb.o r - sponge_layer_damping.o r - stats_rad_zt_module.o r - new_tsdadg_pdf.o r - mean_adv.o r - stats_variables.o r - input_reader.o r - advance_xp3_module.o r - array_index.o r - model_flags.o r - input_names.o r - code_timer_module.o r - new_hybrid_pdf_main.o r - lapack_wrap.o r - Skx_module.o r - LY93_pdf.o r - advance_windm_edsclrm_module.o r - stats_zm_module.o r - pos_definite_module.o r - grid_class.o r - precipitation_fraction.o r - pdf_utilities.o r - T_in_K_module.o r - stats_zt_module.o r - file_functions.o r - advance_xm_wpxp_module.o r - mixing_length.o r - lapack_interfaces.o r - clubb_precision.o r - calc_roots.o r - endian.o r - mt95.o r - new_hybrid_pdf.o r - setup_clubb_pdf_params.o r - clip_semi_implicit.o r - advance_xp2_xpyp_module.o r - matrix_operations.o r - parameter_indices.o r - turbulent_adv_pdf.o r - stats_lh_sfc_module.o r - clip_explicit.o r - new_pdf_main.o r - new_pdf.o r - stats_type_utilities.o r - pdf_parameter_module.o r - sigma_sqd_w_module.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_lapack make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_bugsrad cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.microphys_utils cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_parabolic cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_coamps make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_KK_microphys make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_morrison make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -c ../src/Morrison_microphys/module_mp_graupel.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.silhs make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_morrison.a module_mp_graupel.o r - module_mp_graupel.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_other make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/morrison_microphys_module.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/microphys_init_cleanup.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/microphys_driver.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/clubb_driver.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c ../src/error.F90 gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -Wno-conversion -c -I../src ../src/enhanced_simann.F90 ar rv /home/jenkins/workspace/clubb_error_handling_test/compile/../lib/libclubb_other.a arm_97.o cloud_feedback.o parameters_microphys.o silhs_category_variance_module.o gabls2.o error.o clex9_oct14.o ice_dfsn_module.o wangara.o stat_file_utils.o clubb_model_settings.o lba.o jun25.o spec_hum_to_mixing_ratio.o arm.o mixed_moment_PDF_integrals.o microphys_driver.o clex9_nov02.o arm_0003.o enhanced_simann.o extended_atmosphere_module.o clubb_driver.o input_grads.o gfdl_activation.o extrapolation.o fire.o input_netcdf.o mpace_a.o bomex.o coamps_microphys_driver_module.o rico.o rad_lwsw_module.o bugsrad_driver.o cloud_sed_module.o sounding.o time_dependent_input.o morrison_microphys_module.o gabls3.o simple_rad_module.o estimate_scm_microphys_module.o quicksort.o gabls3_night.o astex_a209.o dycoms2_rf02.o twp_ice.o advance_microphys_module.o atex.o lh_microphys_driver_module.o hydrostatic_module.o mpace_b.o KK_microphys_module.o soil_vegetation.o arm_3year.o parameters_radiation.o microphys_init_cleanup.o diag_ustar_module.o input_interpret.o sfc_flux.o cobra.o input_fields.o dycoms2_rf01.o nov11.o cos_solar_zen_module.o r - arm_97.o r - cloud_feedback.o r - parameters_microphys.o r - silhs_category_variance_module.o r - gabls2.o r - error.o r - clex9_oct14.o r - ice_dfsn_module.o r - wangara.o r - stat_file_utils.o r - clubb_model_settings.o r - lba.o r - jun25.o r - spec_hum_to_mixing_ratio.o r - arm.o r - mixed_moment_PDF_integrals.o r - microphys_driver.o r - clex9_nov02.o r - arm_0003.o r - enhanced_simann.o r - extended_atmosphere_module.o r - clubb_driver.o r - input_grads.o r - gfdl_activation.o r - extrapolation.o r - fire.o r - input_netcdf.o r - mpace_a.o r - bomex.o r - coamps_microphys_driver_module.o r - rico.o r - rad_lwsw_module.o r - bugsrad_driver.o r - cloud_sed_module.o r - sounding.o r - time_dependent_input.o r - morrison_microphys_module.o r - gabls3.o r - simple_rad_module.o r - estimate_scm_microphys_module.o r - quicksort.o r - gabls3_night.o r - astex_a209.o r - dycoms2_rf02.o r - twp_ice.o r - advance_microphys_module.o r - atex.o r - lh_microphys_driver_module.o r - hydrostatic_module.o r - mpace_b.o r - KK_microphys_module.o r - soil_vegetation.o r - arm_3year.o r - parameters_radiation.o r - microphys_init_cleanup.o r - diag_ustar_module.o r - input_interpret.o r - sfc_flux.o r - cobra.o r - input_fields.o r - dycoms2_rf01.o r - nov11.o r - cos_solar_zen_module.o make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_standalone cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_tuner cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.jacobian cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.G_unit_tests cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.int2txt make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/jacobian.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/clubb_standalone.F90 cd /home/jenkins/workspace/clubb_error_handling_test/compile/../obj; make -f Make.clubb_thread_test make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/G_unit_test_types/tuner_tests.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -c ../src/clubb_tuner.F90 make[1]: Entering directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/clubb_thread_test.F90 gfortran clubb_standalone.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_standalone -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff gfortran clubb_thread_test.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_thread_test -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -fno-range-check -g -fbounds-check -mieee-fp -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c ../src/G_unit_tests.F90 gfortran mu_sigma_hm_tests.o tuner_tests.o hole_filling_tests.o KK_integrals_tests.o spurious_source_test.o silhs_category_test.o corr_cholesky_mtx_tests.o G_unit_tests.o pdf_parameter_tests.o Nc_Ncn_test.o read_corr_mtx_test.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/G_unit_tests -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' gfortran jacobian.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/jacobian -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff gfortran ran_state.o amoeba.o ran1_v.o nrtype.o amebsa.o nr.o nrutil.o clubb_tuner.o ran1_s.o -o /home/jenkins/workspace/clubb_error_handling_test/compile/../bin/clubb_tuner -L/home/jenkins/workspace/clubb_error_handling_test/compile/../lib -lclubb_other -lclubb_coamps -lclubb_gfdlact -lsilhs -lclubb_bugsrad -lclubb_KK_microphys -lclubb_parabolic -lclubb_morrison -lmicrophys_utils -lclubb_param -lclubb_lapack -march=native -msse3 -mfpmath=sse -fopenmp -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' make[1]: Leaving directory '/home/jenkins/workspace/clubb_error_handling_test/obj' python ../utilities/check_for_missing_threadprivate.py ../src/CLUBB_core/ ../src/SILHS/ check_for_missing_threadprivate.py has begun. check_for_missing_threadprivate.py passed. perl ../utilities/CLUBBStandardsCheck.pl ../src/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/CLUBB_core/*.F90 CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3260 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/Benchmark_cases/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] sh + grep 'Error calling advance_wp2_wp3' run_scripts/advance_wp2_wp3_bad_wp2 Error calling advance_wp2_wp3 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] sh + grep 'Error calling advance_xm_wpxp' run_scripts/advance_xm_wpxp_bad_wp2 Error calling advance_xm_wpxp [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS