Started by user Daniel Ebel Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_column_mirror_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_column_mirror_test/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_column_mirror_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/F90-fix-multicol+l_add_dycore_grid^{commit} # timeout=10 Checking out Revision 9f763ea4364477568daef3797877c48a870db1a5 (refs/remotes/origin/F90-fix-multicol+l_add_dycore_grid) > git config core.sparsecheckout # timeout=10 > git checkout -f 9f763ea4364477568daef3797877c48a870db1a5 # timeout=10 Commit message: "fixed 2d array passing into 1d array fns. Technically BIT_CHANGING for multicol" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_column_mirror_test_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_column_mirror_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/F90-fix-multicol+l_add_dycore_grid^{commit} # timeout=10 Checking out Revision 9f763ea4364477568daef3797877c48a870db1a5 (refs/remotes/origin/F90-fix-multicol+l_add_dycore_grid) > git config core.sparsecheckout # timeout=10 > git checkout -f 9f763ea4364477568daef3797877c48a870db1a5 # timeout=10 Commit message: "fixed 2d array passing into 1d array fns. Technically BIT_CHANGING for multicol" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Column Mirror Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/check_mirrored_multi_col_output.py -n 3 -nproc 2 Logs and output: /home/jenkins/workspace/clubb_column_mirror_test_branch/output/column_mirror_test/run_kltq3k2f [1/4] Configuring and compiling (gfortran, CPU) [2/4] ABC run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -hr C8/0.2:0.8/3 C8 = [0.2, 0.5, 0.8] [3/4] CBA run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -hr C8/0.2:0.8/3 (columns reversed) C8 = [0.8, 0.5, 0.2] [4/4] Comparison PASS arm_97 PASS arm PASS astex_a209 PASS atex PASS bomex PASS cgils_s11 PASS cgils_s12 PASS cgils_s6 PASS clex9_nov02 PASS clex9_oct14 PASS dycoms2_rf01_fixed_sst PASS dycoms2_rf01 PASS dycoms2_rf02_do PASS dycoms2_rf02_ds PASS dycoms2_rf02_nd PASS dycoms2_rf02_so PASS fire PASS gabls2 PASS gabls3_night PASS gabls3 PASS jun25_altocu PASS lba PASS mc3e PASS mpace_a PASS mpace_b_silhs PASS mpace_b PASS nov11_altocu PASS rico_silhs PASS rico PASS twp_ice PASS wangara [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS