Console Output

Started by an SCM change
Obtained jenkins_tests/bc_tolerance_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /home/jenkins/workspace/clubb_bc_tolerance_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials THe key used by the system for the tests
 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 1bea1ba8fa1adec945e50b7040d836465bd865ce (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 1bea1ba8fa1adec945e50b7040d836465bd865ce # timeout=10
Commit message: "Adding the correct pipeline script for this test"
 > git rev-list --no-walk a5de0c1313eddb90f168aa494c277395274f9d08 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Compile)
[Pipeline] sh
+ compile/compile.bash
......................................................................................................................................................................... Make.clubb_lapack is ready.
............................................................................... Make.clubb_param is ready.
......................... Make.clubb_bugsrad is ready.
... Make.microphys_utils is ready.
..... Make.clubb_parabolic is ready.
.............. Make.clubb_KK_microphys is ready.
................................................. Make.clubb_coamps is ready.
... Make.clubb_morrison is ready.
... Make.clubb_gfdlact is ready.
............. Make.silhs is ready.
................................................................. Make.clubb_other is ready.
... Make.clubb_standalone is ready.
... Make.clubb_thread_test is ready.
............ Make.clubb_tuner is ready.
... Make.jacobian is ready.
............. Make.G_unit_tests is ready.
... Make.int2txt is ready.
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_param
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_gfdlact
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_lapack
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_bugsrad
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.microphys_utils
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_parabolic
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_coamps
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_morrison
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_KK_microphys
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.silhs
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_other
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_standalone
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_tuner
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.jacobian
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.G_unit_tests
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.int2txt
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_thread_test
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj'
python ../utilities/check_for_missing_threadprivate.py ../src/CLUBB_core/ ../src/SILHS/
check_for_missing_threadprivate.py has begun.
check_for_missing_threadprivate.py passed.
perl ../utilities/CLUBBStandardsCheck.pl ../src/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/CLUBB_core/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/Benchmark_cases/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Configure Clubb)
[Pipeline] sh
+ bash -c 'cp input/tunable_parameters_compatible_r8029/* input/tunable_parameters'
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Clubb)
[Pipeline] sh
+ bash -c 'echo bomex >> run_scripts/RUN_CASES'
+ bash -c 'echo dycoms2_rf01 >> run_scripts/RUN_CASES'
+ run_scripts/run_scm_all.bash

Performing standard run

Running arm
Running arm_97
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
Running astex_a209
Running atex
Running bomex
Running cgils_s6
Running cgils_s11
Running cgils_s12
Running clex9_nov02
Running clex9_oct14
Running dycoms2_rf01
Running dycoms2_rf01_fixed_sst
Running dycoms2_rf02_do
Running dycoms2_rf02_ds
Running dycoms2_rf02_nd
Running dycoms2_rf02_so
Running fire
Running gabls2
Running gabls3
Running gabls3_night
Running jun25_altocu
Running lba
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
Running mc3e
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
Running mpace_a
Running mpace_b
Running mpace_b_silhs
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
Running nov11_altocu
Running rico
Running rico_silhs
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
 Warning: the specified correlations for chi (old s) and Ncn are non-zero.
 The latin hypercube code will not converge to the analytic solution using these settings.
Running twp_ice
STOP CLUBB ERROR: l_Lscale_vert_avg has been depricated
Running wangara
Running bomex
Running dycoms2_rf01
arm_97 failure
lba failure
mc3e failure
mpace_b_silhs failure
rico_silhs failure
twp_ice failure
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Check output against tolerance)
Stage "Check output against tolerance" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Cleanup)
Stage "Cleanup" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE