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Started by an SCM change Obtained jenkins_tests/bc_tolerance_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_bc_tolerance_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials THe key used by the system for the tests > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 079d350ab435c4bfac823c82023b5b6fcce0a796 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 079d350ab435c4bfac823c82023b5b6fcce0a796 # timeout=10 Commit message: "Adding silhs_conv_test and G_unit_test to production and adding clean up post step to remainder of tests without them." > git rev-list --no-walk bea4ae0588cdc6758927c5c55cd7edcfb8c48c12 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + compile/compile.bash ......................................................................................................................................................................... Make.clubb_lapack is ready. ............................................................................... Make.clubb_param is ready. ......................... Make.clubb_bugsrad is ready. ... Make.microphys_utils is ready. ..... Make.clubb_parabolic is ready. .............. Make.clubb_KK_microphys is ready. ................................................. Make.clubb_coamps is ready. ... Make.clubb_morrison is ready. ... Make.clubb_gfdlact is ready. ............. Make.silhs is ready. ................................................................. Make.clubb_other is ready. ... Make.clubb_standalone is ready. ... Make.clubb_thread_test is ready. ............ Make.clubb_tuner is ready. ... Make.jacobian is ready. ............. Make.G_unit_tests is ready. ... Make.int2txt is ready. cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_param cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_gfdlact make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_lapack make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_bugsrad cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.microphys_utils cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_parabolic cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_coamps make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_KK_microphys cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_morrison make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.silhs make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_other make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_standalone cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_tuner cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.jacobian cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.G_unit_tests cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.int2txt make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' cd /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../obj; make -f Make.clubb_thread_test make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_bc_tolerance_test/obj' python ../utilities/check_for_missing_threadprivate.py ../src/CLUBB_core/ ../src/SILHS/ check_for_missing_threadprivate.py has begun. check_for_missing_threadprivate.py passed. perl ../utilities/CLUBBStandardsCheck.pl ../src/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/CLUBB_core/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/Benchmark_cases/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Configure Clubb) [Pipeline] sh + bash -c 'cp input/tunable_parameters_compatible_r8029/* input/tunable_parameters' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Clubb) [Pipeline] sh + bash -c 'echo bomex > run_scripts/RUN_CASES' + bash -c 'echo dycoms2_rf01 >> run_scripts/RUN_CASES' + run_scripts/run_scm_all.bash Performing standard run Running bomex #2 0x7fb68210b17d in ??? #3 0x7fb682309673 in ??? #4 0x7fb6823125c7 in ??? #5 0x7fb6823127e8 in ??? #6 0x568f3d in __parameters_tunable_MOD_read_parameters at /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/parameters_tunable.F90:1337 #7 0x402af8 in clubb_standalone at ../src/clubb_standalone.F90:53 #8 0x4029c6 in main at ../src/clubb_standalone.F90:11 Running dycoms2_rf01 #2 0x7f9254f5717d in ??? #3 0x7f9255155673 in ??? #4 0x7f925515e5c7 in ??? #5 0x7f925515e7e8 in ??? #6 0x568f3d in __parameters_tunable_MOD_read_parameters at /home/jenkins/workspace/clubb_bc_tolerance_test/compile/../src/CLUBB_core/parameters_tunable.F90:1337 #7 0x402af8 in clubb_standalone at ../src/clubb_standalone.F90:53 #8 0x4029c6 in main at ../src/clubb_standalone.F90:11 bomex failure dycoms2_rf01 failure [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check output against tolerance) Stage "Check output against tolerance" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE