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Started by an SCM change
Obtained jenkins_tests/clubb_BFB_varying_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on nelson in /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e (refs/remotes/origin/master)
Commit message: "Autoupdated clubb's morrison using sam's morrison"
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e # timeout=10
 > git rev-list --no-walk 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_varying_flags_gfortran_test_config
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/default
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/default
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag1
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag1
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag10
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag10
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag11
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag11
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag12
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag12
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag13
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag13
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag14
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag14
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag15
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag15
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag16
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag16
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag17
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag17
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag2
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag2
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag3
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag3
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag4
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag4
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag5
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag5
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag6
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag6
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag7
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag7
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag8
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag8
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.
Directory 1 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e/flag9
Directory 2 is /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/1e25b23661f4235b8a0484bf76bc542cc1ab5f6d/flag9
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']

###DIFFING arm netCDF (*.nc) files###
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.

Comparing flag set: default

Comparing flag set: flag1

Comparing flag set: flag10

Comparing flag set: flag11

Comparing flag set: flag12

Comparing flag set: flag13

Comparing flag set: flag14

Comparing flag set: flag15

Comparing flag set: flag16

Comparing flag set: flag17

Comparing flag set: flag2

Comparing flag set: flag3

Comparing flag set: flag4

Comparing flag set: flag5

Comparing flag set: flag6

Comparing flag set: flag7

Comparing flag set: flag8

Comparing flag set: flag9

SUMMARY: no differences detected across varying-flags output.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test

Using /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_clubb_w_varying_flags.py --min-cases -max_iters=360 -f run_scripts/run_bindiff_w_flags_config_core_flags.json']

Diffing command: run_scripts/run_bindiff_varying_flags_output.py

=============================== Running Test ===============================

Parsing message from commit: 14926dd026f178cacec4336a6389e3c59c2eb4d4
Parsing message from commit: 3b604aca0d98b5f656e2be332d3090819f8af59f
Parsing message from commit: feb80b9af098529dd9fb4192368a639bea44bac9
Parsing message from commit: 89a78e3c137f74f6b8ed0c02875651646e6b0fd8
Parsing message from commit: ea158fd73790b07ad91600595adf0a10f0bccd04
Parsing message from commit: 170ad3f0b10539e37efd2f19c76f51b6bec3a255
Parsing message from commit: 8759dedaf6cd411a4d4943c3d8525b022ca00986
Parsing message from commit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

Checking Commit: 14926dd026f178cacec4336a6389e3c59c2eb4d4
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 3b604aca0d98b5f656e2be332d3090819f8af59f
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: feb80b9af098529dd9fb4192368a639bea44bac9
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 89a78e3c137f74f6b8ed0c02875651646e6b0fd8
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: ea158fd73790b07ad91600595adf0a10f0bccd04
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 170ad3f0b10539e37efd2f19c76f51b6bec3a255
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 8759dedaf6cd411a4d4943c3d8525b022ca00986
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_clubb_w_varying_flags.py --min-cases -max_iters=360 -f run_scripts/run_bindiff_w_flags_config_core_flags.json'
	Checking out 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_clubb_w_varying_flags.py --min-cases -max_iters=360 -f run_scripts/run_bindiff_w_flags_config_core_flags.json'
	Diffing: 'run_scripts/run_bindiff_varying_flags_output.py adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d'

=============================== Test Results ===============================

Commit Range Checked = 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d...adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d
	REMOVING: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS