Started by an SCM change Obtained jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 77b73e25b7c54c85e9714178efbd6dc893834dc5 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 77b73e25b7c54c85e9714178efbd6dc893834dc5 # timeout=10 Commit message: "Making certain things differentiation safe, various parts had issues with sqrt or divisions that needed clipping for reverse mode calcualtions. Lot's of code sections seemed to already have worked around this with a safe_sqrt method (or some variation) that I standardized and put in advance_helper. (#1361)" > git rev-list --no-walk 17b29a7e938300692cec5c6c7e78aae7b9578568 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config Directory 1 is 77b73e25b7c54c85e9714178efbd6dc893834dc5 Directory 2 is 17b29a7e938300692cec5c6c7e78aae7b9578568 Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ================================================ bomex ================================================ >No differences detected by the linux diff in bomex_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 2 cases ['bomex', 'dycoms2_rf01'] Fail: 0 cases [] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\npython run_scripts/run_scm.py -config compatible_r8029 bomex', '\npython run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01'] Diffing command: python3 run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: af35e5202409ab58c575e8d2841f59d31ba80c94 Parsing message from commit: 5b5bf5f74f30e0332db965215e3de5e6baf72d6e Parsing message from commit: 77b73e25b7c54c85e9714178efbd6dc893834dc5 Checking Commit: af35e5202409ab58c575e8d2841f59d31ba80c94 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 5b5bf5f74f30e0332db965215e3de5e6baf72d6e Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 77b73e25b7c54c85e9714178efbd6dc893834dc5 Running: final commit to check, not labelled BIT_CHANGING Checking out 77b73e25b7c54c85e9714178efbd6dc893834dc5 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -config compatible_r8029 bomex' Running: 'python run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01' Checking out 17b29a7e938300692cec5c6c7e78aae7b9578568 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm.py -config compatible_r8029 bomex' Running: 'python run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01' Diffing: 'python3 run_scripts/run_bindiff_all.py 77b73e25b7c54c85e9714178efbd6dc893834dc5 17b29a7e938300692cec5c6c7e78aae7b9578568' =============================== Test Results =============================== Commit Range Checked = 17b29a7e938300692cec5c6c7e78aae7b9578568...77b73e25b7c54c85e9714178efbd6dc893834dc5 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 77b73e25b7c54c85e9714178efbd6dc893834dc5 =============================== Cleanup =============================== Removing all generated output REMOVING: 17b29a7e938300692cec5c6c7e78aae7b9578568 REMOVING: 77b73e25b7c54c85e9714178efbd6dc893834dc5 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS