Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision fb12cc1c0be895d2db030ceed981bc5121277b0e (refs/remotes/origin/master) Commit message: "The last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f fb12cc1c0be895d2db030ceed981bc5121277b0e # timeout=10 > git rev-list --no-walk 73dc365c77ab4bf2405d753f167307ae9be330a0 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config Directory 1 is fb12cc1c0be895d2db030ceed981bc5121277b0e Directory 2 is 73dc365c77ab4bf2405d753f167307ae9be330a0 Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ================================================ bomex ================================================ >No differences detected by the linux diff in bomex_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 2 cases ['bomex', 'dycoms2_rf01'] Fail: 0 cases [] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': - 73dc365c77ab4bf2405d753f167307ae9be330a0 CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01'] Diffing command: python3 run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: fb12cc1c0be895d2db030ceed981bc5121277b0e Found: RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0 Checking Commit: fb12cc1c0be895d2db030ceed981bc5121277b0e Running: final commit to check, not labelled BIT_CHANGING Checking out fb12cc1c0be895d2db030ceed981bc5121277b0e Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters' Running: 'python run_scripts/run_scm.py bomex' Running: 'python run_scripts/run_scm.py dycoms2_rf01' Checking out 73dc365c77ab4bf2405d753f167307ae9be330a0 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters' Running: 'python run_scripts/run_scm.py bomex' Running: 'python run_scripts/run_scm.py dycoms2_rf01' Diffing: 'python3 run_scripts/run_bindiff_all.py fb12cc1c0be895d2db030ceed981bc5121277b0e 73dc365c77ab4bf2405d753f167307ae9be330a0' =============================== Test Results =============================== Commit Range Checked = 73dc365c77ab4bf2405d753f167307ae9be330a0...fb12cc1c0be895d2db030ceed981bc5121277b0e No new Unresolved commits found. No fake BIT_CHANGING commits found. Resolved: 73dc365c77ab4bf2405d753f167307ae9be330a0 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: fb12cc1c0be895d2db030ceed981bc5121277b0e =============================== Cleanup =============================== Removing all generated output REMOVING: 73dc365c77ab4bf2405d753f167307ae9be330a0 REMOVING: fb12cc1c0be895d2db030ceed981bc5121277b0e ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS