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Started by user Gunther Huebler Obtained jenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 # timeout=10 Commit message: "Adding multi_col cases to run_bindiff.py and adding new multicol BFBness test." > git rev-list --no-walk 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_multi_col_BFB_nvhpc_test/config =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test/repo Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash', '\nrm -rf repo/output', '\nmkdir repo/output', '\nrepo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in', '\nrepo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in'] Diffing command: repo/run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 Found: BIT_CHANGING Parsing message from commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 Checking Commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 Checking out 7726602feef7f94a81bfa01ac55336701d5d2dfc Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash' Running: ' rm -rf repo/output' Running: ' mkdir repo/output' Running: ' repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in' Running: ' repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in' ================== WARNING ================== Commit: 7726602feef7f94a81bfa01ac55336701d5d2dfc There was a problem copying the output. Did the run complete? Is the output path correct? repo/output The run will continue, and this commit will be considered unresolved. =========================================== Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again ISSUE WITH COMMIT DETECTED: 7726602feef7f94a81bfa01ac55336701d5d2dfc differs from 7726602feef7f94a81bfa01ac55336701d5d2dfc Checking out 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash' Running: ' rm -rf repo/output' Running: ' mkdir repo/output' Running: ' repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in' Running: ' repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in' ================== WARNING ================== Commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 There was a problem copying the output. Did the run complete? Is the output path correct? repo/output The run will continue, and this commit will be considered unresolved. =========================================== Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again Commit '91fc9735c426ef0fce29ebab86c6d1c7e4638b90' is BIT_CHANGING and properly labelled as such. Checking Commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 Running: final commit to check, not labelled BIT_CHANGING Checking out 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash' Running: ' rm -rf repo/output' Running: ' mkdir repo/output' Running: ' repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in' Running: ' repo/run_scripts/run_scm_all.bash --min-cases -p repo/run_scripts/clubb_params_multi_col.in' ================== WARNING ================== Commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 There was a problem copying the output. Did the run complete? Is the output path correct? repo/output The run will continue, and this commit will be considered unresolved. =========================================== Commit 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 already failed. Will not run again ISSUE WITH COMMIT DETECTED: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 differs from 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 Traceback (most recent call last): File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 361, in rev_parse obj = to_commit(obj) File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 208, in to_commit if obj.type == "tag": AttributeError: 'NoneType' object has no attribute 'type' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 56, in <module> main() File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main exit_code = test.run_test() File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 335, in run_test problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits) File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 472, in find_problem_commits problem_commits = problem_commits + self.find_all_bc_commits_in_range(commit_range) File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 735, in find_all_bc_commits_in_range commits_to_check = self.commits_in_range(commit_range[0], commit_range[1]) File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 806, in commits_in_range commits_to_check.append(self.repo.commit(hash)) File "/usr/local/lib/python3.10/dist-packages/git/repo/base.py", line 660, in commit return self.rev_parse(str(rev) + "^0") File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 375, in rev_parse raise BadName( gitdb.exc.BadName: Ref 'Invalid revision spec '^0' - not enough parent commits to reach '^0'' did not resolve to an object [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE