Started by an SCM change Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on nelson in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision bdee6e6dbac76a996cdf73a88522c47affdd4d90 (refs/remotes/origin/master) Commit message: "Fixing clubb_error_handling_gfortran_test (#1281)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f bdee6e6dbac76a996cdf73a88522c47affdd4d90 # timeout=10 > git rev-list --no-walk 3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config Directory 1 is 36ca61e3203b201832c5ca74ce764fc7e97786a8 Directory 2 is 3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_stats.nc< >>No differences detected in the common fields in file arm_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING cobra netCDF (*.nc) files### >No differences detected by the linux diff in cobra_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case cobra.<<< ********************************************************************************************************** ###DIFFING gabls3 netCDF (*.nc) files### >No differences detected by the linux diff in gabls3_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case gabls3.<<< ********************************************************************************************************** ###DIFFING mpace_b netCDF (*.nc) files### >No differences detected by the linux diff in mpace_b_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case mpace_b.<<< ********************************************************************************************************** ###DIFFING rico_silhs netCDF (*.nc) files### >No differences detected by the linux diff in rico_silhs_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<< ********************************************************************************************************** SUMMARY: Differences detected by linux diff but no differences in the common variables of the netCDF files compared. Directory 1 is c15b1d3c005fdffa76902e976acdb5db5dbde012 Directory 2 is 36ca61e3203b201832c5ca74ce764fc7e97786a8 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_stats.nc< >>Differences above threshold were detected in the common fields in file arm_stats.nc<< >>>Differences in common variables detected for case arm<<< ********************************************************************************************************** ###DIFFING cobra netCDF (*.nc) files### >The linux diff detected differences in cobra_stats.nc< >>Differences above threshold were detected in the common fields in file cobra_stats.nc<< >>>Differences in common variables detected for case cobra<<< ********************************************************************************************************** ###DIFFING gabls3 netCDF (*.nc) files### >The linux diff detected differences in gabls3_stats.nc< >>Differences above threshold were detected in the common fields in file gabls3_stats.nc<< >>>Differences in common variables detected for case gabls3<<< ********************************************************************************************************** ###DIFFING mpace_b netCDF (*.nc) files### >The linux diff detected differences in mpace_b_stats.nc< >>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<< >>>Differences in common variables detected for case mpace_b<<< ********************************************************************************************************** ###DIFFING rico_silhs netCDF (*.nc) files### >The linux diff detected differences in rico_silhs_stats.nc< >>Differences above threshold were detected in the common fields in file rico_silhs_stats.nc<< >>>Differences in common variables detected for case rico_silhs<<< ********************************************************************************************************** SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. Directory 1 is bdee6e6dbac76a996cdf73a88522c47affdd4d90 Directory 2 is c15b1d3c005fdffa76902e976acdb5db5dbde012 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs'] ###DIFFING arm netCDF (*.nc) files### >No differences detected by the linux diff in arm_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ********************************************************************************************************** ###DIFFING cobra netCDF (*.nc) files### >No differences detected by the linux diff in cobra_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case cobra.<<< ********************************************************************************************************** ###DIFFING gabls3 netCDF (*.nc) files### >No differences detected by the linux diff in gabls3_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case gabls3.<<< ********************************************************************************************************** ###DIFFING mpace_b netCDF (*.nc) files### >No differences detected by the linux diff in mpace_b_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case mpace_b.<<< ********************************************************************************************************** ###DIFFING rico_silhs netCDF (*.nc) files### >No differences detected by the linux diff in rico_silhs_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<< ********************************************************************************************************** SUMMARY: Linux diff did not detect any differences in the compared files. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 02123793194ca95295bbd90c35129faf395b9525 Parsing message from commit: 36ca61e3203b201832c5ca74ce764fc7e97786a8 Parsing message from commit: c15b1d3c005fdffa76902e976acdb5db5dbde012 Found: BIT_CHANGING Parsing message from commit: bdee6e6dbac76a996cdf73a88522c47affdd4d90 Checking Commit: 02123793194ca95295bbd90c35129faf395b9525 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 36ca61e3203b201832c5ca74ce764fc7e97786a8 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: c15b1d3c005fdffa76902e976acdb5db5dbde012 Checking out 36ca61e3203b201832c5ca74ce764fc7e97786a8 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Checking out 3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Diffing: 'run_scripts/run_bindiff_all.py 36ca61e3203b201832c5ca74ce764fc7e97786a8 3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9' Checking out c15b1d3c005fdffa76902e976acdb5db5dbde012 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Output from 36ca61e3203b201832c5ca74ce764fc7e97786a8 already saved Diffing: 'run_scripts/run_bindiff_all.py c15b1d3c005fdffa76902e976acdb5db5dbde012 36ca61e3203b201832c5ca74ce764fc7e97786a8' Commit 'c15b1d3c005fdffa76902e976acdb5db5dbde012' is BIT_CHANGING and properly labelled as such. Checking Commit: bdee6e6dbac76a996cdf73a88522c47affdd4d90 Running: final commit to check, not labelled BIT_CHANGING Checking out bdee6e6dbac76a996cdf73a88522c47affdd4d90 Running: 'python compile.py -gpu openacc -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b' Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3' Output from c15b1d3c005fdffa76902e976acdb5db5dbde012 already saved Diffing: 'run_scripts/run_bindiff_all.py bdee6e6dbac76a996cdf73a88522c47affdd4d90 c15b1d3c005fdffa76902e976acdb5db5dbde012' =============================== Test Results =============================== Commit Range Checked = 3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9...bdee6e6dbac76a996cdf73a88522c47affdd4d90 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: bdee6e6dbac76a996cdf73a88522c47affdd4d90 =============================== Cleanup =============================== Not removing any generated output. RENAMING bdee6e6dbac76a996cdf73a88522c47affdd4d90 to latest_revision_validated_bdee6e6dbac76a996cdf73a88522c47affdd4d90 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS