Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision d4f17af1e782b8c942e9d85cec08e2396228331c (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f d4f17af1e782b8c942e9d85cec08e2396228331c # timeout=10 Commit message: "BIT_CHANGING:af17ebf83826423f24165dab46ce098bf39444dd" > git rev-list --no-walk e8130a518dd4bd8cbb8d92f75c3d204f8f567480 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_wp2_wp3_module.F90:1882:43: C11_Skw_fnc, C16_fnc, rho_ds_zm, rho_ds_zt, & 1 Warning: Unused dummy argument ‘c16_fnc’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_wp2_wp3_module.F90:1236:43: C11_Skw_fnc, C16_fnc, rho_ds_zm, rho_ds_zt, & 1 Warning: Unused dummy argument ‘c16_fnc’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 236 : call check_nan( pdf_params%covar_chi_eta_1(1,:), "pdf_params%covar_chi_eta_1(1,:)", & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 238 : call check_nan( pdf_params%covar_chi_eta_2(1,:), "pdf_params%covar_chi_eta_2(1,:)", & ! intent(in) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/numerical_check.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1419 : if ( clubb_config_flags%l_use_C7_Richardson .or. clubb_config_flags%l_use_C11_Richardson ) then CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3191 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/642621266723971acfa6497018035788b6a80a27. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/latest_revision_validated_e8130a518dd4bd8cbb8d92f75c3d204f8f567480. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 236 : call check_nan( pdf_params%covar_chi_eta_1(1,:), "pdf_params%covar_chi_eta_1(1,:)", & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 238 : call check_nan( pdf_params%covar_chi_eta_2(1,:), "pdf_params%covar_chi_eta_2(1,:)", & ! intent(in) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/numerical_check.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1419 : if ( clubb_config_flags%l_use_C7_Richardson .or. clubb_config_flags%l_use_C11_Richardson ) then CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3191 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/828253e53b5b8a2c0d22a9ba86ab30dd4164e86b. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/642621266723971acfa6497018035788b6a80a27. Diffing arm netCDF (*.nc) files *** Differences detected in arm_zt.nc! *** *** Differences detected in arm_zm.nc! *** *** Differences detected in arm_sfc.nc! *** Diffing arm_97 netCDF (*.nc) files *** Differences detected in arm_97_zt.nc! *** *** Differences detected in arm_97_zm.nc! *** *** Differences detected in arm_97_sfc.nc! *** Diffing atex netCDF (*.nc) files *** Differences detected in atex_zt.nc! *** *** Differences detected in atex_zm.nc! *** *** Differences detected in atex_sfc.nc! *** Diffing bomex netCDF (*.nc) files *** Differences detected in bomex_zt.nc! *** *** Differences detected in bomex_zm.nc! *** *** Differences detected in bomex_sfc.nc! *** Diffing dycoms2_rf01 netCDF (*.nc) files *** Differences detected in dycoms2_rf01_zt.nc! *** *** Differences detected in dycoms2_rf01_zm.nc! *** *** Differences detected in dycoms2_rf01_sfc.nc! *** Diffing dycoms2_rf02_ds netCDF (*.nc) files *** Differences detected in dycoms2_rf02_ds_zt.nc! *** *** Differences detected in dycoms2_rf02_ds_zm.nc! *** *** Differences detected in dycoms2_rf02_ds_sfc.nc! *** Diffing gabls3_night netCDF (*.nc) files *** Differences detected in gabls3_night_zt.nc! *** *** Differences detected in gabls3_night_zm.nc! *** *** Differences detected in gabls3_night_sfc.nc! *** Diffing lba netCDF (*.nc) files *** Differences detected in lba_zt.nc! *** *** Differences detected in lba_zm.nc! *** *** Differences detected in lba_sfc.nc! *** Diffing rico netCDF (*.nc) files *** Differences detected in rico_zt.nc! *** *** Differences detected in rico_zm.nc! *** *** Differences detected in rico_sfc.nc! *** Diffing twp_ice netCDF (*.nc) files *** Differences detected in twp_ice_zt.nc! *** *** Differences detected in twp_ice_zm.nc! *** *** Differences detected in twp_ice_sfc.nc! *** Diffing wangara netCDF (*.nc) files *** Differences detected in wangara_zt.nc! *** *** Differences detected in wangara_zm.nc! *** *** Differences detected in wangara_sfc.nc! *** There were some differences detected! There were differences detected in netCDF (*.nc) files. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................./home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/d4f17af1e782b8c942e9d85cec08e2396228331c. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/828253e53b5b8a2c0d22a9ba86ab30dd4164e86b. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (e8130a518dd4bd8cbb8d92f75c3d204f8f567480) 642621266723971acfa6497018035788b6a80a27 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b f09a7aaaf5136251bc039c84215aaf2ee089f30b 4ebb5deaafdf4368bc8625638805d311b3d1e6d6 70fd151d8892a97ff1f37a85ef62a899894fcf7e d4f17af1e782b8c942e9d85cec08e2396228331c Making list from 'UnresolvedCommits': - af17ebf83826423f24165dab46ce098bf39444dd - f24ca42ae8f1f83578ea85f378140abe0624c9c2 - 59a2fb4c73bfb290f8b857d1e89e4535fb76f73e Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'rm -rf repo/output', 'mkdir repo/output', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 642621266723971acfa6497018035788b6a80a27 Parsing message from commit: 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b Found: BIT_CHANGING Parsing message from commit: f09a7aaaf5136251bc039c84215aaf2ee089f30b Parsing message from commit: 4ebb5deaafdf4368bc8625638805d311b3d1e6d6 Parsing message from commit: 70fd151d8892a97ff1f37a85ef62a899894fcf7e Parsing message from commit: d4f17af1e782b8c942e9d85cec08e2396228331c Found: BIT_CHANGING:af17ebf83826423f24165dab46ce098bf39444dd Found: RESOLVED:f24ca42ae8f1f83578ea85f378140abe0624c9c2 Found: RESOLVED:59a2fb4c73bfb290f8b857d1e89e4535fb76f73e Checking Commit: 642621266723971acfa6497018035788b6a80a27 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b Checking out 642621266723971acfa6497018035788b6a80a27 Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from e8130a518dd4bd8cbb8d92f75c3d204f8f567480 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 642621266723971acfa6497018035788b6a80a27 latest_revision_validated_e8130a518dd4bd8cbb8d92f75c3d204f8f567480' Checking out 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 642621266723971acfa6497018035788b6a80a27 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b 642621266723971acfa6497018035788b6a80a27' Commit '828253e53b5b8a2c0d22a9ba86ab30dd4164e86b' is BIT_CHANGING and properly labelled as such. Checking Commit: f09a7aaaf5136251bc039c84215aaf2ee089f30b Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 4ebb5deaafdf4368bc8625638805d311b3d1e6d6 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 70fd151d8892a97ff1f37a85ef62a899894fcf7e Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: d4f17af1e782b8c942e9d85cec08e2396228331c Running: final commit to check, not labelled BIT_CHANGING Checking out d4f17af1e782b8c942e9d85cec08e2396228331c Running: 'repo/compile/compile.bash' Running: 'rm -rf repo/output' Running: 'mkdir repo/output' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Output from 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash d4f17af1e782b8c942e9d85cec08e2396228331c 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b' =============================== Test Results =============================== Commit Range Checked = e8130a518dd4bd8cbb8d92f75c3d204f8f567480...d4f17af1e782b8c942e9d85cec08e2396228331c No new Unresolved commits found. No fake BIT_CHANGING commits found. Resolved: af17ebf83826423f24165dab46ce098bf39444dd Resolved: f24ca42ae8f1f83578ea85f378140abe0624c9c2 Resolved: 59a2fb4c73bfb290f8b857d1e89e4535fb76f73e No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: d4f17af1e782b8c942e9d85cec08e2396228331c =============================== Cleanup =============================== Removed repo. Removing all but final generated output. REMOVING: e8130a518dd4bd8cbb8d92f75c3d204f8f567480 REMOVING: 642621266723971acfa6497018035788b6a80a27 REMOVING: 828253e53b5b8a2c0d22a9ba86ab30dd4164e86b RENAMING d4f17af1e782b8c942e9d85cec08e2396228331c to latest_revision_validated_d4f17af1e782b8c942e9d85cec08e2396228331c Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS