Started by user Gunther Huebler Obtained jenkins_tests/clubb_bin_diff_regression_gfortran_test_new/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_gfortran_test_new # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 011c5887aea0f3f5e201866cf0b44b9e91599b66 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 011c5887aea0f3f5e201866cf0b44b9e91599b66 # timeout=10 Commit message: "Updating Jenkinsfile because sys_admin files changed names." > git rev-list --no-walk 011c5887aea0f3f5e201866cf0b44b9e91599b66 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_test_workspace/bit_diff_clubb_config .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:132:23: hydromet, & ! Unused 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_KK_microphys.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../src/SILHS/silhs_api_module.F90:317:13: rho_ds_zt, & ! Unused 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_morrison.a ../src/KK_microphys_module.F90:43:35: subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/clubb_bit_diff_test_workspace/repo/compile/../lib/libclubb_other.a CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1961 : (/lon_vals/), (/lat_vals/), time_current, dt_main, l_silhs_out, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1971 : (/lon_vals/), (/lat_vals/), time_current, dt_main, l_silhs_out, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2246 : stats_zt, stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2264 : stats_zt, stats_zm, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2401 : stats_zt, stats_zm, stats_sfc, stats_lh_zt, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/clubb_driver.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1440 : stats_zm, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 498 : stats_zt, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 532 : stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 550 : stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_xp2_xpyp_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 432 : stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/setup_clubb_pdf_params.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 311 : !============================================================================================================! CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/SILHS/silhs_api_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1961 : (/lon_vals/), (/lat_vals/), time_current, dt_main, l_silhs_out, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1971 : (/lon_vals/), (/lat_vals/), time_current, dt_main, l_silhs_out, & ! intent(in) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2246 : stats_zt, stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2264 : stats_zt, stats_zm, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 2401 : stats_zt, stats_zm, stats_sfc, stats_lh_zt, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/clubb_driver.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 1440 : stats_zm, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 3294 : write(fstderr,*) "l_damp_wp2_using_em = T requires C1=C14 and l_stability_correct_tau_zm = F" CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_clubb_core_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 498 : stats_zt, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 532 : stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 550 : stats_zm, stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/advance_xp2_xpyp_module.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 432 : stats_sfc, & ! intent(inout) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/CLUBB_core/setup_clubb_pdf_params.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 311 : !============================================================================================================! CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/SILHS/silhs_api_module.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/clubb_bit_diff_test_workspace/011c5887aea0f3f5e201866cf0b44b9e91599b66. Directory 2 is /home/jenkins/clubb_bit_diff_test_workspace/92d538a1595070dde97520cc16eabb23d14567e3. Diffing arm netCDF (*.nc) files Diffing arm_97 netCDF (*.nc) files Diffing atex netCDF (*.nc) files Diffing bomex netCDF (*.nc) files Diffing dycoms2_rf01 netCDF (*.nc) files Diffing dycoms2_rf02_ds netCDF (*.nc) files Diffing gabls3_night netCDF (*.nc) files Diffing lba netCDF (*.nc) files Diffing rico netCDF (*.nc) files Diffing twp_ice netCDF (*.nc) files Diffing wangara netCDF (*.nc) files There were no differences detected! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/clubb_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/clubb_bit_diff_test_workspace/repo Output Save Mode: last Using branch: master Commits to test vs the baseline (92d538a1595070dde97520cc16eabb23d14567e3) e49cd5f3a7c6b9b7dabb13dc9e199d588634985c 9c5247b051c13d31c7745fb484f63898e07da5eb 011c5887aea0f3f5e201866cf0b44b9e91599b66 Making list from 'UnresolvedHiddenBitChangingCommits': Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', 'repo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: e49cd5f3a7c6b9b7dabb13dc9e199d588634985c Parsing message from commit: 9c5247b051c13d31c7745fb484f63898e07da5eb Parsing message from commit: 011c5887aea0f3f5e201866cf0b44b9e91599b66 Checking Commit: e49cd5f3a7c6b9b7dabb13dc9e199d588634985c Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 9c5247b051c13d31c7745fb484f63898e07da5eb Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 011c5887aea0f3f5e201866cf0b44b9e91599b66 Running: final commit to check, not labelled BIT_CHANGING Checking out 011c5887aea0f3f5e201866cf0b44b9e91599b66 Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Checking out 92d538a1595070dde97520cc16eabb23d14567e3 Running: 'repo/compile/compile.bash' Running: 'repo/run_scripts/run_scm_all.bash --min-cases' Diffing: 'repo/run_scripts/run_bindiff_all.bash 011c5887aea0f3f5e201866cf0b44b9e91599b66 92d538a1595070dde97520cc16eabb23d14567e3' =============================== Test Results =============================== Commit Range Checked = 92d538a1595070dde97520cc16eabb23d14567e3...011c5887aea0f3f5e201866cf0b44b9e91599b66 =============================== Updating Config File =============================== =============================== Cleanup =============================== Removing all but final generated output. REMOVING: 92d538a1595070dde97520cc16eabb23d14567e3 REMOVING: e49cd5f3a7c6b9b7dabb13dc9e199d588634985c ================== WARNING ================== [Errno 2] No such file or directory: 'e49cd5f3a7c6b9b7dabb13dc9e199d588634985c' There was a problem during cleanup. The test most likely failed during configuration, and some instance variables were not set. =========================================== Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS