Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 95d5d12aef49035170773f0714a97f4109bcccdd (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 95d5d12aef49035170773f0714a97f4109bcccdd # timeout=10 Commit message: "Tuner additions (#1324)" > git rev-list --no-walk 95d5d12aef49035170773f0714a97f4109bcccdd # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_e3sm_flags_gfortran_test_config =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test Using /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases -config e3sm_maint32'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 95d5d12aef49035170773f0714a97f4109bcccdd Checking Commit: 95d5d12aef49035170773f0714a97f4109bcccdd Running: final commit to check, not labelled BIT_CHANGING Checking out 95d5d12aef49035170773f0714a97f4109bcccdd Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases -config e3sm_maint32' Checking out 31446891daef22d1f1ac63262df21583933565b9 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases -config e3sm_maint32' ================== WARNING ================== Commit: 31446891daef22d1f1ac63262df21583933565b9 There was a problem copying the output. Did the run complete? Is the output path correct? output The run will continue, and this commit will be considered unresolved. =========================================== ISSUE WITH COMMIT DETECTED: 95d5d12aef49035170773f0714a97f4109bcccdd differs from 31446891daef22d1f1ac63262df21583933565b9 Finding all BIT_CHANGING commits in range: 31446891daef22d1f1ac63262df21583933565b9...95d5d12aef49035170773f0714a97f4109bcccdd Output from 95d5d12aef49035170773f0714a97f4109bcccdd already saved Commit 31446891daef22d1f1ac63262df21583933565b9 already failed. Will not run again Found: 95d5d12aef49035170773f0714a97f4109bcccdd =============================== Test Results =============================== Commit Range Checked = 31446891daef22d1f1ac63262df21583933565b9...95d5d12aef49035170773f0714a97f4109bcccdd New Unresolved Commits: 95d5d12aef49035170773f0714a97f4109bcccdd No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 95d5d12aef49035170773f0714a97f4109bcccdd =============================== Updating Config File =============================== Saving into UnresolvedCommits: 95d5d12aef49035170773f0714a97f4109bcccdd Saving into BaselineCommit: 95d5d12aef49035170773f0714a97f4109bcccdd =============================== Cleanup =============================== Removing all generated output REMOVING: 95d5d12aef49035170773f0714a97f4109bcccdd ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 95d5d12aef49035170773f0714a97f4109bcccdd ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 31446891daef22d1f1ac63262df21583933565b9 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE