Changes

Summary

1. initial changelog updates (details)
2. address review comments; changelog updates (details)
3. Update to head of larson-group cam (details)
4. Changes for the nag compiler and less output (details)
5. Namelist changes for Issue 467 (details)
6. Changes to address issues 467 and 461 (details)
7. fix deferred functions issue (for NAG) (details)
8. Add restart capabilities and regression test (details)
9. Add Hall and Pedersen Conductance diagnostics (details)
10. Update externals to match cesm2_3_beta08 (details)
11. Preliminary ChangeLog (details)
12. Remove EDYN_ZIGM2_HAL and EDYN_ZIGM11_PED, replace with HALL_CONDUCTANCE and PED_CONDUCTANCE (details)
13. minor changes (details)
14. Update STARTDATE year from 0000 to 0001 to fix failure in CLM (details)
15. Update ChangeLog (details)
16. Minor updates (details)
17. Setup ALI-ARMS regression test (details)
18. update ccs_config_cesm tag (details)
19. add nuopc restart change and associated test (details)
20. move t_startf call (details)
21. Fix for SD driven by ERA5 data (issue #207) (details)
22. specify PTS_MODE only for mct driver (details)
23. a fix for limited num of emissions files (issue #538) (details)
24. add log message with file names (details)
25. Change sparse checkout to svn specific checkout (details)
26. back out nuopc restart changes (details)
27. fix typo in te_map (details)
28. Oops, forgot the path to SILHS (details)
29. initial changelog updates (details)
30. adjust size of max_num_emis_files (details)
31. add some documentation for properties interface (details)
32. Add subsetting for columns (details)
33. add some documentation for aerosol state interface (details)
34. Update HEMCO external to ESCOMP (details)
35. updates cime external; update NTASKS for outfrq9s_refined_camchem (details)
36. remove idphys tests; update outfrq3s_usecase tests to cover previous idphys tests; changelog updates (details)
37. update ccs_config external; add mct tests for aquaplanet SCAM tests (details)
38. Committing changes to carma_pmc/user_nl_cam and test_growth/carma_model_mod.F90 (details)
39. final changelog updates; return to old ccs_config tag; update atm_comp_nuopc to enable SCT tests to run (details)
40. Assign nlev to pver and remove top_lev:nlev subsetting (details)
41. Namelist updates and modifiers, adds Lscale option to config and ipdf_call_placement (details)
42. Remove local state_loc_X variables and initialize a few more (details)
43. Updates to defaults and remove some comments (details)
44. Update open statements and change _OPENACC ifdef (details)
45. Fix a few more missing :mgncol in call to micro_mg_cam (details)
46. setting pmc test to ERS to avoid failure (details)
47. changes to fix scam - also need a cmeps update (details)
48. fix for multiday AMIE time interpolation bug (details)
49. Re-doing Lscale namelist settings (details)
50. Finish configure roll back, move acc directives, finish remove getunit, update cam_dev physpkg with changes from this PR (details)
51. Fix SCT test script (details)
52. Remove unneeded code (details)
53. Additional cleanup and apply mods to cam_dev version (details)
54. Further cleanup when differenced with cam6_3_055 (details)
55. Update CICE/CIME/CCS_CONFIG to make ERP run work properly (details)
56. Add new GPU test suite for PUMAS (details)
57. Update the test_driver for Casper (details)
58. Removing two more freeunit calls that snuck in there. (details)
59. Fix issues introduced during cleanup (details)
60. Put back a couple of intializations and correct another typo (details)
61. initialize a couple of variables in cam_dev (details)
62. Changed default clubb_l_e3sm_config to false (details)
63. initial commit of ebudget code (details)
64. add cam6_3_044 mods to dyn_grid and cam_grid_support to support writes to GLL grid (details)
65. fix bug in budgeting logic when dynamic energy variables are not output to history (details)
66. update externals (details)
67. use longname for mct/cice5 tests (details)
68. initial changelog updates (details)
69. Use CLUBB's own clubb_l_do_expldiff_rtm_thlm only to control diffusion on rtm and thlm; eliminate duplicate flags clubb_expldiff and do_expldiff. (details)
70. Update xmlchange command with Steve's suggestions (details)
71. updates to the inline energy diagnostics including a new budgets module that handles the meta data involved in working with budgets similar to the way constituents are handled (details)
72. update ccs_config external (details)
73. scam fixes (details)
74. update cice and ccs_config externals; add testing to changelog (details)
75. fixes for SCT test (details)
76. updated ccs_config (details)
77. Cleaning up all of the namelist fields (details)
78. clubb_e3sm should default to false (details)
79. update externals; remove redundant mct tests (details)
80. update Makefile to point to new genf90 location (details)
81. bugfix missing set_dry_to_wet call (details)
82. First review changes (details)
83. fix typo in sct.py which accidentally introduced (details)
84. Changes to address review comments (details)
85. updates for misc tag includes #530 #543 #551 #506 (details)
86. update ChangeLog for PR (details)
87. Limit arrays to PUMAS to levels which are being used (details)
88. Initialize PUMAS output variables from above top_lev to top of atmosphere (details)
89. Remove extra copy of tendency variables (details)
90. Add same fixes to cam_dev version of micro_pumas_cam.F90 (details)
91. Add missing comma (details)
92. A few more minor tweeks (details)
93. New module, air_composition to control and (details)
94. Changes for the izumi nag tests (details)
95. Changes to address peverwhee review (details)
96. bld/namelist_files/namelist_definition.xml (details)
97. Minor updates and update CICE6 external (details)
98. Minor code reorganization (details)
99. Address final reviewer's comments (details)
100. Remove initializations which were not needed and did not work (details)
101. remove grid size assumption of input data (details)
102. Put back in array of NaNs (details)
103. ChangeLog update for cam6_3_057 (details)
104. replace lonmx and jmxm with lonp1 and latp1, respectively (details)
105. Make a few changes as indicated by patc (details)
106. finish thermo refactor; now builds but doesn't run (details)
107. Improve some documentation and other changes to appease reviewers (details)
108. add call to air_composition_readnl (details)
109. fix typo (details)
110. remove PASSed tests and add doi reference (details)
111. Changing silhs namelist options to include subcol_silhs in the name (details)
112. fix dimensions in cam_thermo, fix a couple of calls; change "N2" to "N" (details)
113. rough prototype for DDT (details)
114. fix dimensions in cam_thermo (details)
115. use time_coordinate utility (details)
116. Responses to Jesse s review (details)
117. Moving update from regular physpkg to cam_dev physpkg (details)
118. Address some review comments (details)
119. PR review updates (details)
120. Add call to microp_aero_final in cam_dev/physpkg (details)
121. Calculate pver_c using pref_mid during init (details)
122. cam6_3_057 updates (details)
123. update Changelog for PR (details)
124. Last of Jesses review suggestions (details)
125. Additional cleanup (details)
126. One review fix and fixing clubb mf test errors (details)
127. Had to roll back these changes to get everything working correctly (details)
128. use time_coord in LTR reader; AMIE corrections to timing weights (details)
129. Removed wp2_pr_dfsn output field because it caused buildnamelist to hang (details)
130. Updates for MPAS test and un-re-roll-back for clubb-mf tests (details)
131. ChangeLog entry (details)
132. Andrew original mods (details)
133. ChangeLog entry for cam6_3_059 (details)
134. Minor updates (details)
135. Put micro_pumas_cam.F90 changes in appropriate directory (details)
136. ChangeLog entries (details)
137. ChangeLog updates (details)
138. Update PUMAS external to bring in required changes (details)
139. scale sensible heat fluxes by exner (details)
140. dry base state fixes, omega fixes, removed rho_in (redundant) (details)
141. read Henry's law coeff, etc., from file (details)
142. use the new shr_drydep_mod module (details)
143. more changes to use shr_drydep_mod module (details)
144. added dqcore, ivt and clubb energy diagnostics (details)
145. added time-step info to the log (details)
146. use external branches (details)
147. Committing changes prior to testing for tag (details)
148. bug fixes to th, thv and rho, after clubb state update (details)
149. Update namelist settings (details)
150. fixed outfld for midpoint fields, change all units of g to kg, remove redundant outflds (details)
151. quick typo fix (details)
152. Address more reviewer's comments (details)
153. Committing ChangeLog for new CAM tag (details)
154. address bens comments (details)
155. Removed old mg3 test and added two F2000dev tests with one mg3 (details)
156. changes to appease github reviewers (details)
157. Add additional diagnostics (details)
158. Separate namelist reads from advertise fields (PORT fix) (details)
159. ChangeLog entry (details)
160. Update PUMAS external (details)
161. Remove prebeta test as already has a prealpha test run (details)
162. Update ChangeLog for cam6_3_063 (details)
163. move pdf closure to post position, initialize rcm to CLDLIQ (details)
164. refine error checking of reading time/date variables (details)
165. removed clubb_timestep namelist defaults for hi-res grids (details)
166. ChangeLog edits; improve error handling; other minor misc changes (details)
167. adjustments to LTR waccmx tests (details)
168. ChangeLog update (details)
169. ChangeLog updates (details)
170. small fixes; cleanup (details)
171. fix get_dp_ref reference; revert air_composition indexing (details)
172. fix get_dp_ref function (details)
173. use constants; clean up cam_thermo" (details)
174. use chemistry preprocessor github repo for external; add chem preprocessor regression test (details)
175. removed time-step output, addressed Cheryl's first review (details)
176. oops forgot to remove tstep mods in radiation (details)
177. mods to fix issue 582 (details)
178. update chem_proc external to a tag (details)
179. cleanup pbuf pointers in tphysac_init (details)
180. added reference to scaling surface fluxes by exner (details)
181. fixed exner issue with PBLH calc, cleanup inv_exner array (details)
182. Specify imports; removed redundant nmasses in constructor; add allocated checks (details)
183. improve documentation; some code cleanup (details)
184. implement geneneric num conc limiter routine (details)
185. check allocate status; use longer iterator names (details)
186. Add the bug fix files (details)
187. addressed part 2 of cheryls initial review (details)
188. use null() initializer; improvements to comments; minor code clean up (details)
189. Cleanup information writes (details)
190. rename "set_options" as "read_fields_namelists" (details)
191. Remove frierson_convection (details)
192. more allocate status checks (details)
193. Removed unnecessary diagnostic message (details)
194. add allocate status check; expand on comment (details)
195. Update ChangeLog for cam6_3_065 (details)
196. addressed Peter's edits; scale sfc fluxes by lowest mid-level pressure, density (details)
197. 3d cpairv for sensible heat flux bc (details)
198. Use "read_surface_fields_namelists" subroutine name; minor updates to comments (details)
199. addressed Jesse's first review (details)
200. Fix a couple of minor issues (details)
201. Replace t0 with physconst tmelt; tweak comments (details)
202. fixed outfld bugs (details)
203. Remove extraneous comment (details)
204. Initialize aerosol state object with nullify (details)
205. fixed sihls test fail (details)
206. Preliminary ChangeLog (details)
207. Remove MG1 and prototype DDT with a couple of fields (details)
208. added ChangeLog text (details)
209. ChangeLog one line summary (details)
210. changes for specifying upper boundary conditions via namelist options (details)
211. add check for cnst_fixed_ubc optional argument is present (details)
212. ChangeLog entries (details)
213. correction to ChangeLog (details)
214. ChangeLog draft (details)
215. FIX PARENTHESIS (details)
216. Changes to the transported interfaces and initial implementation of invocation in stepon (details)
217. Update externals (details)
218. Moved test from izumi to cheyenne (details)
219. Update CTSM external (details)
220. Update ChangeLog for cam6_3_069 (details)
221. Update CTSM tag to dev103 - bug fix tag (details)
222. Update ChangeLog for cam6_3_070 (details)
223. First major chunk of variables in ddt (details)
224. Address reviewer's comments (details)
225. address first round of review (details)
226. Corrections to coordinate maps for oplus and geomag history grids (details)
227. moved waccmx test back to izumi (details)
228. remove obsolete noy_ubc module (details)
229. increase ntasks for f09 waccmx; specify pelayout for f09 wiemer test; set ROF_NCPL for weimer test (details)
230. check allocate and bcast status and other minor changes (details)
231. address review comments (details)
232. Use offical tags for externals (details)
233. address review comments; move some interfaces to air_composition (details)
234. move FW4madSD izumi test from nag to gnu (details)
235. change get_thermal_energy to get_enthalpy_energy (details)
236. change get_enthalpy_energy to get_enthalpy (details)
237. in stepon use aerosol state objects created in microp_aero (details)
238. ccs_config external update to include NAG compiler mismatch flag for mpi-serial builds -- needed for NAG SCAM test on izumi (details)
239. revert ccs_config external -- will use nag_compiler branch changes when merge to head of cam_develpment (details)
240. cam_dev correction (details)
241. Second chunk of variables in ddt (details)
242. next wave of review comments (details)
243. implement stepon mods in all dycores; nullify aero props obj in zm_microphysics (details)
244. initial ChangeLog entries (details)
245. ChangeLog updates (details)
246. Add zonal_mean.F90 and usage case in nudging.F90 (details)
247. Changed Zonal Filtering default to .false. (details)
248. Completed initial list for DDT (details)
249. ChangeLog updates (details)
250. Added comment to clarify hole filling pbuf fields (details)
251. Minor cleanup (details)
252. Remove commit of cam/micro_pumas_cam.F90 which should not have been made (details)
253. Update external to temporary PUMAS hash (details)
254. remove the single grid box version of loadaer (details)
255. Minor changes (details)
256. Structural update: Move variable definitions, fix namelist define (details)
257. Separate srf_emissions and extfrc_set to hco_cc_emissions module to reduce clutter (details)
258. Fixes for compile (details)
259. Now lookup rxt_jno2_idx, rxt_joh_idx in gas_phase_chemdr_inti (details)
260. Fix dimension for addfld for UMR and UMS (details)
261. Document factor used in calculation of H fluxes at upper boundary (details)
262. Updates for misc answer changing bug fixes (details)
263. Redid config_compsets cleanup (details)
264. Remove factor for kv4 and kc4 per direction by Jesse (details)
265. Remove extra scale factors (details)
266. Fix typo (details)
267. Removed a couple of more areas which had factors which no longer needed (details)
268. revert back SE dycore and SSTICE changes.  Will go in next PR (details)
269. Commit with SE and SSTICE bug fixes (details)
270. Replace a few more variables (details)
271. Update ChangeLog for cam6_3_072 (details)
272. Apply new variables per Jesse's suggestion (details)
273. put back the cam6_3_072 files which were overwritten (details)
274. dev with debug - working (details)
275. remove debug print (details)
276. Back out changes, to allow changes to be bit-for-bit (details)
277. fix Externals.cfg (details)
278. fix bugs while updating to cam6_3_072 - checked against Peter's script (details)
279. Recommit all changes (details)
280. Remove user_nl_cpl file to fix failing prebeta test (details)
281. Update ChangeLog for cam6_3_073 (details)
282. move diffusivity/conductivity constants to air_composition; remove pint_out optional argument (details)
283. fix import statment (details)
284. Correct PIO error handling, include more details on UBC inputs, misc changes (details)
285. implement aerosol_properties_object interface (details)
286. Some minor edits (details)
287. remove use of iulog and endrun from aerosol class code (details)
288. ChangeLog update (details)
289. Point to new pumas tag (details)
290. First pass ChangeLog (details)
291. add abstract key word (details)
292. fix wrong variable used (details)
293. use local tmelt value (details)
294. Final Changelog edits (details)
295. add changelog (details)
296. revert voltonumb formulations to restore bit-for-bit results (details)
297. construct local aerosol_properties obj (details)
298. francis review comments (details)
299. use aerosol_properties_object interface (details)
300. ChangeLog entry (details)
301. ChangeLog updates (details)
302. Add addtional fields to PUMAS DDT (details)
303. Update temporary PUMAS hash (details)
304. update ChangeLog (details)
305. ChangeLog tweaks (details)
306. more tweaks to ChangeLog (details)
307. updates to get MPAS budgets working, next step to refactor to make consistent with se changes (details)
308. Add code to properly generate interpolated output with r4 reals (Github issue #644). (details)
309. Remove extraneous debug messages for performance (details)
310. Test using ncol instead of psetcols for DDT allocation (details)
311. Use generalized aerosol interfaces in nucleate ice code (details)
312. remove unused tolerance; some clean up (details)
313. restore cam_dev code (details)
314. some refactor for mpas budgets (details)
315. remove some debug printout (details)
316. Add fillvalue checks for CSLAM and non-physics grids, and perform some code clean-up. (details)
317. incapsulate num dens calc in aerosol_state; use rho in type weights (details)
318. use assumed shape array arguments (details)
319. Use accumulated change in number mixing ratios for updates (details)
320. change order of operations in sulfate number concentrations calc to git bit-for-bit results (details)
321. optional args for aerosol properties and state objects (details)
322. use share code version of erf function (details)
323. initial ChangeLog entries; some cleanup (details)
324. Mods for using ncol dimension and WACCM bug fixes (details)
325. Move location of fillvalue checks to catch extended panel values as well. (details)
326. Making nextsw_cday a double type rather than integer to fix cam_dev restart bug. (details)
327. implement nudging zonal mean filtering options; rename zonal_mean module as zonal_mean_mod (details)
328. Add interface for collecting history dimension values (details)
329. implement camchem-mam5 compsets -- FC2000mam5, FCHISTmam5 (details)
330. Update ChangeLog for cam6_3_078 (details)
331. change physprops inputs for MAM4 (coarse mode) (details)
332. Update externals to get fixes (details)
333. fixes for bit-for-bit reproducible results wrt changing number of MPI tasks; misc cleanup (details)
334. add cheyenne regression tests (details)
335. Zero out more fields and add writing of trop_cld_lev values to file (details)
336. changes for running FHIST on refinded SE grids (details)
337. Update ccs_config (details)
338. change catagories on the CAM refined grid tests (details)
339. able to operate on fields with arbitrary number of levels; clean up; move to src/utils (details)
340. mass fixes for se dycore (details)
341. fixes for dae test (details)
342. Fix problem with protected variable nextsw_cday (details)
343. fix bug in boundarydata initial read (details)
344. add waccmsc test starting 14 Dec (details)
345. Update hash for pumas (details)
346. add cam_dev phys with waccm-sc chem test starting 14 Dec (details)
347. Bring in official PUMAS tag (details)
348. Remove problematic MCT tests (details)
349. generalized reading of attribute so that it does not depend on cmeps PR (details)
350. Increase time for a regression test (details)
351. Update ChangeLog for cam6_3_079 (details)
352. Fix final reviewer comments and updated location for mbarv (details)
353. ChangeLog updates for cam6_3_080 (details)
354. initial implementation of physics grid TEM diagnostics (details)
355. add conditionals for doing the TEM daigs (details)
356. implement aerosol state update_bin method; remove incomplete get_*total_mmr methods (details)
357. move nucleate_ice_cam_init calls to the respective if/else sections (details)
358. improve namelist options descriptions; check presense of GEN_GAUSSLATS option before use (details)
359. Update src/cpl/nuopc/atm_comp_nuopc.F90 (details)
360. NAG fixes for budgeting (details)
361. improve Nudge_ZonalFilter namelist options description (details)
362. calculate scale height; add comments (details)
363. updates for cam_dev and some cleanup from nag bldlog warnings (details)
364. fix bug in do_tem_diags setting (details)
365. fix NAG issue with strings (details)
366. modify text for logfile (details)
367. mods to log file messages and remove unused energy difference (details)
368. Jesse's suggestions -- correct typos, code cleanup, etc. (details)
369. fix get_info interface and some NAG cleanup (details)
370. bug fix for cam6_3_080 merge (details)
371. Further updates to HEMCO-CESM interface in response to comments: (details)
372. Update based on feedback. Now checks for rxt of jno2 and jo3_b before allocating (details)
373. bug fix for cam_thermo (details)
374. correct fix for cam_thermo (details)
375. added budget for phAP-phBF in physpkg to fix error with budget_print (details)
376. bug fix for comparing internal/external grids (details)
377. restrict the MAM4 coarse mode size changes to cam_dev physics (details)
378. update default ic for aquaplanet to notopo (details)
379. More of Jesse's suggestions -- correct typos, code cleanup, etc. (details)
380. cam_thermo fix (details)
381. remove addfld call (details)
382. add descriptors to new reg tests (details)
383. Revert treatment of stratospheric sulfates which are a special case (details)
384. initial changelog (details)
385. changelog fixes (details)
386. Added l_enable_relaxed_clipping to the CAM-CLUBB code. (details)
387. update cam_dev with required budget_add call for logging energy budgets (details)
388. I added CLUBB's new tunable parameter a3_coef_min to the CAM-CLUBB code. (details)
389. Updating the call to setup_clubb_core_api in accordance with new (details)
390. Added code to interface with the latest version of CLUBB. (details)
391. Adding _pert arrays to other advance_clubb_core call. (details)
392. Making compatible with latest clubb change. (details)
393. Making compatible with latest clubb change. (details)
394. Now using 2D versions of setup_grid and setup_parameters (details)
395. Making compatible with latest clubb change. (details)
396. Making compatible with latest clubb change. (details)
397. Making compatible with latest clubb change. update_xp2_mc will be broken by this, but all we need to do to fix it is push the column loop into it. (details)
398. Making use of new 2D call to update_xp2_mc (details)
399. move dBF energy call from dyn_comp to dp_coupling (details)
400. initial clean-up of energy diags for log file (details)
401. changelog updates (details)
402. initial refactor of het frz code -- generalize (details)
403. refactor round 2 (details)
404. correction to Jcnt (details)
405. collkernel operatate on collection of aerosol bins (details)
406. generalize hetfrz_classnuc_calc routine (details)
407. use longer var names for indices; implement common name length parameter (details)
408. Add hemco_grid_xdim, hemco_grid_ydim namelist variables to configure HEMCO grid. (details)
409. Update to use tagged release hemco-cesm1_0_hemco3_5_0 (details)
410. better physics-dynamics coupling with MPAS (code ifdef'ed in since it is answer changing) (details)
411. further improvements in logfile energy diagnostics (details)
412. remove endrun while developing (details)
413. update ChangeLog (details)
414. use longer var names for indices (details)
415. declare lower bound begchunk in assumed shape array args (details)
416. declare lower bound begchunk in assumed shape array args (details)
417. TFIX output should be turned on for all dycores using energy fixer (details)
418. remove FV dme adjust diagnostics (details)
419. renaming for incl. all liq and all ice in one variable (details)
420. Revert "renaming for incl. all liq and all ice in one variable" (details)
421. Remove extraneous check for n_frc_files in mo_extfrc when HEMCO is enabled. (details)
422. add all water in pressure for SE (large commit!) - recover cam_development answers with #ifdef phl_cam_development (details)
423. tweak var names (details)
424. initial refactor of het frz code -- generalize (details)
425. refactor round 2 (details)
426. correction to Jcnt (details)
427. collkernel operatate on collection of aerosol bins (details)
428. generalize hetfrz_classnuc_calc routine (details)
429. tweak var names (details)
430. remove unused variable (details)
431. fix bug in how indices for energy diagnostics are set in dyn_comp.F90 (details)
432. fix for bug in se advection (details)
433. update externals to match cesm2_3_alpha10b (details)
434. Declaring local variables with state%ncol rather than pcols. This avoid occasional slicing and other complications. Also making everything in clubb_tend_cam follow the same indentation scheme. (details)
435. Updating for the latest changes to CLUBB. (details)
436. explicitly name global array for saved cloud-borne aerosols (details)
437. Updating for changes to CLUBB.  See https://github.com/larson-group/clubb/pull/1039. (details)
438. Modified for changes to advance_clubb_core_api. (details)
439. add noise test (details)
440. remove erroneous text (details)
441. Update maximum CAM history field length to 32 (up from 24). (details)
442. update default IC for waccmsc on ne30pg3 grid; new testmods dir (details)
443. Update to hemco-cesm1_0_hemco3_5_1 interface (details)
444. Add HEMCO-CESM enabled compsets (pending verification) (details)
445. Updates to control flow (details)
446. Fix incorrect tag name (details)
447. Bypass extfrc_inti and now use hco_extfrc_inti (details)
448. Now revert mo_extfrc to completely unmodified; fix hco_cc_emissions (details)
449. Revert extra whitespace in mo_extfrc (details)
450. Fix incorrect compset name FC2010climo_HCO (details)
451. Move HCOI_Chunk_Init which creates pbuf fields to phys_register for correct restart (details)
452. updated externals (details)
453. test with mpas dycore (details)
454. Merge problem fixes (details)
455. remove debugging diagnostics (*zm3d history fields) (details)
456. Add HEMCO default namelist options (details)
457. Tag HEMCO_CESM 1.0.1 fix namelist read (details)
458. Implement nfreq namelist variable; misc changes requested by code reviewer (details)
459. misc changes requested by code reviewer (round 2) (details)
460. implement final routines; mics changes (details)
461. tweaks to some of the comments (details)
462. implement final routines; misc code cleanup (details)
463. create LT (L58) and MT (L93) camchem compsets with cam_dev physics (details)
464. Address reviewer's comments (details)
465. emissions moved into own subroutine; move in front of clubb (details)
466. fix formatting (details)
467. cleanup (details)
468. cleanup (details)
469. Update src/physics/cam/clubb_intr.F90 (details)
470. Update src/physics/cam/clubb_intr.F90 (details)
471. address francis review (details)
472. Add fix for chemistry initialization (details)
473. put chemistry fix in correct directory (details)
474. removed unused q_tmp variable (details)
475. Update src/physics/cam/clubb_intr.F90 (details)
476. address jesse's review (details)
477. Update src/chemistry/mozart/chemistry.F90 (details)
478. Add FCts2nudged_HCO compset. (details)
479. remove added test (details)
480. added check_energy to emissions call (details)
481. Preliminary ChangeLog for cam6_3_083 (details)
482. update ChangeLog (details)
483. update cdeps and cice externals (details)
484. Use handle_allocate_error in micro_pumas_cam (details)
485. adding changelog (details)
486. update cdeps external (details)
487. final changelog (details)
488. check allocation status (details)
489. use physconst pi (details)
490. Fixes initialization for cam_dev (details)
491. Initialize pbuf indices (details)
492. update python paths, only build ali_arms with waccm (details)
493. final changelog (details)
494. reduce the number of times orb_param is printed to log (details)
495. changes to appease code reviewer (details)
496. run refined grid tests on 20 cheyenne nodes (details)
497. MPAS: add all water to pressure and consistent height-pressure formulation (details)
498. Address reviewer's comments (details)
499. separate "static energy" into enthalpy and PHIS energy (details)
500. typo (details)
501. minor addtions in dycore_budget.F90 (details)
502. Reduce number of PEs for CONUS regression tests (details)
503. add a couple of parameters (details)
504. remove unneeded use_case (details)
505. More changes from review (details)
506. Update to newest CLUBB tag, organized namelist variables and update CAM namelist files for new options (details)
507. Initializing variables to avoid startup interpolation error in cam_dev. (details)
508. Update cime to fix create_newcase (details)
509. Rearrange namelist items, final merge changes (details)
510. implement aerosol interfaces for het freezing (details)
511. Adding in Colins surface flux smoothing patch (details)
512. remove clubbtop limiter (details)
513. remove comment (details)
514. correct radius units; some clean up (details)
515. Namelist defaults updates to get tests running (details)
516. Update mosart external to work with updated cime and address final reviewer's comments (details)
517. Fix allocation problem (details)
518. implement size wghts; misc cleanup type changes (details)
519. restore ibin and ispc index variable names (details)
520. initial mods (details)
521. update chem mech, dry dep SOAG (details)
522. Add ChangeLog for cam6_3_086 (details)
523. Updating for changes to CLUBB.  See https://github.com/larson-group/clubb/commit/e4f125ba067ba8083f917e0e06b6b2398483d3e4. (details)
524. Update python version used in issue-closing workflow. (details)
525. Adding wp3_pr_dfsn (new wp3 budget term) to relevant CAM scripts. (details)
526. Renaming wpthlp_entermfl to wpthlp_enter_mfl to be consistent with the CLUBB repo. (details)
527. update default namelist settings (details)
528. mv shr_file to shr_log, fix issue in logunit (details)
529. turn on megan and ocean emis when not scam and not aquaplanet (details)
530. Check for divide by zero in very rare cases that failed one aux_cam test (details)
531. update the workflow to use checkout@v3 (details)
532. update setup-python to @v4 (details)
533. Turn off unit 155 ECPP writing by default (details)
534. implement lower bound on clubbtop=pver (details)
535. Address Adams review comments (details)
536. Cleanup unit initializations (details)
537. set namelist defaults for 93 layer config; tweaks to test list (details)
538. fix bug in mass diagnostics in SE (details)
539. added ndep stream capability to cam nuopca cap - now cam always sends ndep - either from WACCM or from reading in stream data (details)
540. update trop_mam4 and waccm_sc_mam4 mechanisms (from chem Cafe) (details)
541. removed sst settings that should only be in docn (details)
542. ChangeLog 1st draft (details)
543. use share1.0.16 external (details)
544. Review comments, remove Default notes from namelist_definition (details)
545. Suggested documentation updates from review (details)
546. Added warning lables to clubb_tend variables dimensioned NCOLS or PCOLS (details)
547. switch to generalized virtual temperature (closes MPAS energy budget) (details)
548. ChangeLog update (details)
549. update budget/state indexes (details)
550. improve log file output for MPAS (details)
551. remove unused option (energy conserving dry-mass adjustment) (details)
552. Update externals to match cesm2_3_alpha11a - more or less (details)
553. A few more review comments (details)
554. Add xmlchange commands for NCPL to fix a couple of failing tests (details)
555. 1st round of mechanism updates (details)
556. Add xmlchange commands for NCPL to fix a failing cheyenne test (details)
557. Add xmlchange commands for NCPL to fix a failing gnu test (details)
558. remove trop_mam5 mechanism (details)
559. some of the changes suggested by matt (details)
560. Fix one more failing cheyenne test (details)
561. Update ChangeLog for cam6_3_088 (details)
562. Remove vertical interpolation onto layer interfaces (details)
563. more mechanism updates (include mam5 mechanisms) (details)
564. nag cleanup (details)
565. implement het frz scaling factors; get hygro factors from aero_props; use physconst params (details)
566. move camchem and waccm compsets to mam5 (details)
567. corrections to compset and namelist settings (details)
568. correction to array ncol extent (details)
569. the majority of Jesse's change requests (details)
570. restore trop_mam xs_long_file default (details)
571. more misc changes suggested by Jesse (details)
572. add regression tests (details)
573. Misc changes suggested by Jesse (details)
574. Last minute review changes (details)
575. update to history fields; move mpas tem test to prealpha (details)
576. implement camchem-mam5 compsets -- FC2000mam5, FCHISTmam5 (details)
577. change physprops inputs for MAM4 (coarse mode) (details)
578. restrict the MAM4 coarse mode size changes to cam_dev physics (details)
579. create LT (L58) and MT (L93) camchem compsets with cam_dev physics (details)
580. changes to appease code reviewer (details)
581. mv shr_file to shr_log, fix issue in logunit (details)
582. update the workflow to use checkout@v3 (details)
583. update setup-python to @v4 (details)
584. Turn off unit 155 ECPP writing by default (details)
585. Cleanup unit initializations (details)
586. set namelist defaults for 93 layer config; tweaks to test list (details)
587. ChangeLog 1st draft (details)
588. use share1.0.16 external (details)
589. ChangeLog update (details)
590. Update externals to match cesm2_3_alpha11a - more or less (details)
591. Add xmlchange commands for NCPL to fix a couple of failing tests (details)
592. Add xmlchange commands for NCPL to fix a failing cheyenne test (details)
593. Add xmlchange commands for NCPL to fix a failing gnu test (details)
594. Fix one more failing cheyenne test (details)
595. Update ChangeLog for cam6_3_088 (details)
596. removed uneeded DEBUG print (details)
597. fixed compile problem in unit checking of stream input (details)
598. add budget calculation after number of steps,days,months,years,endofrun and some bugfixes (details)
599. fix 2pi issue; misc clean up (details)
600. fix for budget_write functionality when budgeting every timestep (details)
601. initialize dcor in sh_create_gaus_grid (details)
602. get rid of WX test variable (details)
603. more misc changes (details)
604. mpas bug fixes (details)
605. addfld calls for stages and differences for all thermodynamic categories (details)
606. ChangeLog draft (details)
607. remove old xs_long_file defaults for cam5/6 phys -- mo_usrrxt updates changes answers for cam5/6 (details)
608. ChangeLog updates (details)
609. bug fixes for CSLAM (details)
610. fix bug in call to get_hydrostatic_energy in energy diagnostics (details)
611. update the default lut xs files and correct comment in mo_sad (details)
612. update default ocean_salinity_file (details)
613. update tests list (details)
614. Remove a few more default lines from namelist definitions (details)
615. fix bug in dimension size (details)
616. initial ChangeLog (details)
617. flag refined configs as not supported (details)
618. another index bug (details)
619. invoke final routine; remove note (details)
620. Add cam_physics_mesh defaults to namelist_defaults_cam.xml (details)
621. update ChangeLog (details)
622. Addressing final review comments (details)
623. doc/ChangeLog (details)
624. bug fixes (details)
625. Update (joint with ce562fd in HEMCO_CESM) to allocate 2-D/3-D pbuf based on extfrc_lst -- do not use directly (details)
626. Adding namelist support for l_vary_convect_depth, l_standard_term_ta, and l_partial_upwind_wp3 (details)
627. Fixed initialized variable inside clubb ifdefs (details)
628. Updated ref for sfc flux code (details)
629. Louisa's updates to nudging namelist settings (details)
630. updates to log file (details)
631. Updated ChangeLog (details)
632. Add missing include (details)
633. corrections to MEGAN, use shr expr parser, and other misc changes (details)
634. reviewer's suggestions -- minor misc changes (details)
635. Fix bug in indexing for hco_cc_emissions; add frcing from in (details)
636. Remove extraneous USE and HEMCO_CESM c-preprocessor statement (details)
637. Update comments in bld/configure for accuracy (details)
638. Fix typo in pbuf_ptr_2d nullify (details)
639. better error checking (details)
640. more changes to appease reviewers (details)
641. use ESCOMP tags for externals; add brief documentation for SOAE emissions factors (details)
642. More reviewer's comments addressed (details)
643. update comment for SOAE emissions factors (details)
644. Address more review requests (details)
645. move test to prebeta (details)
646. increase time limit on CONUS test (details)
647. replace mass_factors with watact_mfactor (details)
648. update ChangeLog (details)
649. update ChangeLog (details)
650. Duseong's corrections to emissions settings (details)
651. use DMS OASISS emis as defaults (details)
652. add check for csw_cycle_yr (details)
653. Fix limitation for calls in restart_physics and minor comment updates (details)
654. Another comment update (details)
655. Minor comment edits (details)
656. fixed specification for clm_2010 (details)
657. set default scaling factors; skip pcarbon mode (details)
658. pass lightning flash frequency to mediator for CTSM (details)
659. Improve cld-to-grnd lightning documentation; change "atm_lightning_flash_freq" to "atm_provides_lightning"; minor cleanup (details)
660. Fix restart issue -- use pbuf field for flash freq field (details)
661. Check namelist setting of atm_provides_lightning (details)
662. calc lightning only when cam phys is used (details)
663. apply namelist scaling factor to flash freq (details)
664. code clean up (details)
665. updates to address PR review comments (details)
666. make MPAS use cam_thermo energy routines (details)
667. first commit (details)
668. corrections for later cmeps (details)
669. cleaned up some comments (details)
670. atm_provides_lightning is FALSE if simple phys or aquaplanet (details)
671. use thermo infrastructure in SE energy calculations (details)
672. cleaned up comments (details)
673. minor changes per reviewers suggestions (details)
674. fixed additional issue in PR (details)
675. Final cleanup per instructions from Patrick (details)
676. ChangeLog draft (details)
677. remove factor from cld2grnd flash freq; fix typos (details)
678. ChangeLog update (details)
679. ChangeLog update (details)
680. Minor changes to history fld units (details)
681. Remove unnecessary conditional (details)
682. Modify conditional (details)
683. initial checkin of jt ebudget changes cam6387 (details)
684. cleaned up mods (details)
685. address cheryl's prelim review (details)
686. Remove extraneous space which prevented spcams from running (details)
687. addressed francis and jesse reviews (details)
688. fix comment (details)
689. convert clubb tendencies in history output to wet (details)
690. typo (details)
691. Tag to upstream HEMCO-CESM 1.1.0 and HEMCO 3.6.0 (details)
692. Now process surface layer emissions in hco_set_extfrc instead of hco_set_srf_emissions (details)
693. Initial ChangeLog changes (details)
694. Add baseline differences to ChangeLog (details)
695. completed out ChangeLog (details)
696. add mam4 tests; adjust comments in usrrxt (details)
697. ChangeLog draft (details)
698. updates to default namelist settings (details)
699. ChangeLog updates (details)
700. ChangeLog updates (details)
701. ChangeLog updates (details)
702. removed unnecessary settings from namelist_definition.xml (details)
703. addressed more issue brought up in PR review (details)
704. removal of unused namelists (details)
705. changes to appease code reviewers (details)
706. correct hetfrz scalfac Defaults in namelist_definition (details)
707. fixed grammar (details)
708. Andrew's changes (details)
709. lots of science changes: (details)
710. adopt new subroutine names in fv and mpas (details)
711. refactor/simplify budget code to use history buffers (details)
712. infrastructure for more accurate energy computation for MPAS; futher improvements to log file output for SE (details)
713. MPAS thermo (details)
714. regression test bug fixes for budget and dycores (details)
715. more regression fixes, this time for izumi (details)
716. This commit changes HEMCO within CESM to be a runtime option controlled by the namelist variable use_hemco in phys_ctl_nl. (details)
717. Fix dependencies. Still temporarily need to bring HEMCO_CESM as used upstream, will deprecate and remove in next HEMCO version. (details)
718. Update HEMCO_CESM interface to upstream hemco-cesm1_1_1_hemco3_6_2 (details)
719. add namelist options for frz scaling factors (details)
720. bug fixes consistent with Simone's test runs (details)
721. Update bld/build-namelist (details)
722. aqueous chemistry fix (details)
723. Update USE_ESMF_LIB default for %HEMCO compsets; sensible defaults in namelist_defaults (details)
724. PR cleanup, ChangeLog wording (details)
725. Fix pbuf field check error if HEMCO is not enabled at runtime (details)
726. ChangeLog update (details)
727. Add hemco_emissions_year to hemco_nl. Updates HEMCO_CESM external to hemco-cesm1_1_2_hemco3_6_2. (details)
728. ChangeLog update (details)
729. PR cleanup (details)
730. consistent calc of BC coated fraction; BC scaling set to 0.01 (details)
731. merge mvertens feature/remove_sst_specs branch; revert build-namelist; misc (details)
732. correct comments (details)
733. minor cleanup (details)
734. apply gas drydep to ptend for cam_dev (details)
735. possible clubb bug fix (details)
736. forgot to include is_physpkg use statement (details)
737. remove rpdeldry from mo_gas subr argument (details)
738. ChangeLog draft (details)
739. revert clubb emissions changes (details)
740. ensure correct dry/wet basis expected in ptend array (details)
741. adjust comment (details)
742. update ChangeLog (details)
743. add full issue path to ChangeLog (details)
744. update to cam6_3_098; fix comment; start ChangeLog (details)
745. update ChangeLog (details)
746. Minor fix: Remove excessive debug prints on other CPUs (details)
747. Introduce ghg_mam4 chemistry mechanism (details)
748. ghg_cam test (details)
749. ChangeLog draft (details)
750. hacks for debuging... (details)
751. Changelog for 099 because git is unable to merge (details)
752. update ChangeLog and rename calc_te routines in cam_dev for budgets (details)
753. First compset changes - not complete (details)
754. update default flbc_file for ghg_mam4 chem (details)
755. use constants from physconst -- changes answers larger than roundoff (details)
756. code clean up (details)
757. update ChangeLog (details)
758. removed unused vars (details)
759. More compset additons (details)
760. turn on physical frictional heating (WACCM-x) (details)
761. revert use of model_top; add use case files (details)
762. fix description of %LT %MT (details)
763. restore factor setting (details)
764. bug in previous commit (details)
765. new energy code in simple physics (details)
766. cleanup (variable names se/dyn_comp.F90 and log file code) (details)
767. remove outcommented code (details)
768. beautify log file energy output (details)
769. add LGHTNG_CLD2GRND diag (details)
770. correct calc_nox_prod logic; misc clean up (details)
771. minor cleanup (details)
772. revert setting of lght_no_prd_factor (details)
773. hack to get bit-for-bit for FV, FV3, EUL (details)
774. some code clean-up (details)
775. beautiful physics energy names (details)
776. implement minimum mass mean radius (details)
777. some refactor and fix bug with area weights for MPAS - normalized to 1 by dividing by 4*pi (details)
778. Update FLTHIST_v0a settings (details)
779. Update prescribed_ozone_file (details)
780. clearer naming convention in SE dycore_budget.F90 code (details)
781. bug fix for budgets, need to normalize before creating a composed field (details)
782. merge waccm_sc_hist_cam6 settings into hist_cam_lt (details)
783. address review comments (details)
784. Add missing descriptions (details)
785. Change to FGRAYRAD and add a number of gray_XXX output variables (details)
786. call phys_grid_ctem from cam_dev/physpkg (details)
787. move setting of namelist options from "Write output files" section (details)
788. revert cam_dev default chem to trop_mam4; update clubb/silhs external (details)
789. Create ChangeLog for cam6_3_101 (details)
790. Use zm history field names; include zm wind and TH output fields (details)
791. fix energy diagnostic bug (details)
792. further improvements and unification of logfile energy output (details)
793. Adding four fields from cam/convect_shallow.F90 to cam_dev/convect_diagnostics.F90 in (details)
794. need unique hist grid id ; correct wthza (details)
795. Additional changes to initialize fields to zero. See issue https://github.com/ESCOMP/CAM/issues/776. (details)
796. Add three new output fields (details)
797. output new variables (details)
798. corrections to history field descriptions (details)
799. clean-up (details)
800. Initialize CO2 when not available in initial conditions file (details)
801. ChangeLog draft (details)
802. ChangeLog update (details)
803. revert pbuf changes in convect_diagnostics; add pbuf checks in cospsimulator_intr (details)
804. Update externals to almost match cesm2_3_alpha12d (details)
805. introduce 2000_cam_dev use case file; add error checking (details)
806. fix issue with undefined values in rho (details)
807. share 2000_cam6 between cam6 and cam_dev (details)
808. restore tracer_cnst_filelist setting (details)
809. add reg test (details)
810. remove old ifdef code (details)
811. clean-up (details)
812. ChangeLog update for cam6_3_103 (details)
813. ChangeLog draft (details)
814. ChangeLog uptdate (details)
815. update ChangeLog (details)
816. bug (identified by Jesse N.) (details)
817. scale temperature T and dtdt in physics rather than in dp_coupling so that dtcore and other diagnostics reflect the temperature increment in dynamics (details)
818. update ChangeLog (details)
819. simple physics support for previous commit: "scale temperature T and dtdt in physics rather than in dp_coupling so that dtcore and other diagnostics reflect the temperature increment in dynamics" (details)
820. remove se_phys_dyn_cp and se_cp_moist namelist vars and associated variables in code (no longer needed) (details)
821. fix initialization bug (from Truesdale) for simple physics energy budgets (details)
822. clarify differences in MPAS log file messages (details)
823. deferred soluble (details)
824. update ChangeLog for PR, bug fix for MPAS, added thermo_budget_debug to put out all budget variables (details)
825. fix failing sub-column test (details)
826. new namelist defaults for water_species - based primarily on microphysics and then physics package (details)
827. Updates to address review comments. (details)
828. fix for prescribed bulk aerosols in cam6 phys (details)
829. allow budgets to be written to files 0-10 (details)
830. Remove HEMCO phase 1 as currently unneeded (details)
831. reimplement Invert_Matrix using LAPACK DGESV (details)
832. changes for misc PR (details)
833. PR review updates for Jesse (details)
834. PR updates for Jesse, continued ... (details)
835. update ChangeLog (details)
836. PR comment updates (details)
837. next tranche of updates for the PR (details)
838. repond to PR comments (details)
839. PR comments mods (details)
840. more mods (details)
841. PR budget mods no answer changing (details)
842. PR responses (details)
843. PR mods. (details)
844. loop over columns rather than use where block; specify intent for arguments (details)
845. replace ntrac>0 with use_cslam throughout code; other clean-up (details)
846. PR updates (details)
847. PR update check budget_num (details)
848. replace /gravit with rga throughout code (details)
849. bug in previous commit - round-off answer changes! (details)
850. split long lines for PR (details)
851. PR fix for valid tapes numbers (details)
852. Update src/utils/cam_thermo.F90 (details)
853. use ESCOMP/CMEPS tag (details)
854. PR (details)
855. Jesse's change requests (details)
856. PR commits (details)
857. fixes for #741, #743 (details)
858. PR update, op to optype in error msg (details)
859. PR updates (details)
860. add comment on filling in missing values; start ChangeLog (details)
861. update ChangeLog (details)
862. PR mods (details)
863. PR stuff (details)
864. PR refactor - comments, rename, added parameters (details)
865. ChangeLog update (details)
866. fix #608, #749 (details)
867. rename file/module budgets to cam_budget along with external subroutines (details)
868. add some changed files that were missing (details)
869. set lght_no_prd_factor namelist opt if chem has NO (details)
870. update ChangeLog (details)
871. ChangeLog updates (details)
872. ChangeLog updates (details)
873. ChangeLog updates (details)
874. added vcoord_moist_pressure ifelse to water_update for FV core (details)
875. rename is_budget to is_cam_budget and cam_budget_em_budget to cam_budget_em_register (details)
876. Update FLTHIST compset and finish implementing initial FMTHIST compset (details)
877. remove extra cslam argument for snapshot and budget register (details)
878. reset --soft HEAD^ to remove last commit in error (details)
879. reverting to 3253718 (details)
880. forgot to rename cam_budget_init in cam/physpkg (details)
881. FINDLOC not supported in NAG versions < 7.0 replaced with MAXLOC (details)
882. bugfix for MAXLOC doesnt affect regression tests as no globals tested yet (details)
883. corrected subroutine renames - only executed when budgets are turned on - no regression test side effects. (details)
884. update Changelog for tag (details)
885. add extra issues also included in this PR (details)
886. spelling... (details)
887. added issue #789 (details)
888. remove optional key words (details)
889. Update ChangeLog (details)
890. update to ChangeLog (details)
891. update compsets; back out cam_history change (details)
892. update ChangeLog (details)
893. Remove unnecessary USE_ESMF_LIB override for HEMCO, as USE_ESMF_LIB is always enabled now (details)
894. Add HEMCO to cam_dev; fix pp_none and pp_terminator new chem_emissions module arguments (details)
895. Remove daily output and add spun up 2 deg FV ncdata file (details)
896. initial add of mpas boundary data for new resolutions (details)
897. Add 1850 MT and LT use_cases (details)
898. Correct typos - Cecile's initial run (details)
899. Fix typos in MT and update comments (details)
900. update ctsm and ccs_config externals (details)
901. Fixing up merge issues and missed changes (details)
902. Update ext_frc_specifier in all LT and MT use_cases (details)
903. Updated tracer_cnst_specifier (details)
904. Use updated ubc file in correct netCDF format (details)
905. Changes to address reviewer comments (details)
906. more info on references (details)
907. changes for default namelist settings; add FMT1850 and FLT1850 compsets for testing (details)
908. Preliminary ChangeLog (details)
909. Move ne30 test case to prealpha (details)
910. Update compset name and final ChangeLog for cam6_3_111 (details)
911. add one more entry to ChangeLog (details)
912. initial ChangeLog (details)
913. ChangeLog update (details)
914. ChangeLog update (details)
915. Address review comments (details)
916. Fix m index for extfrc; update to address reviewer comments (details)
917. Remove extraneous checks for pbuf field association as errors are reported by pbuf_get_field directly (details)
918. Fix wrong species name source in initialization output (details)
919. added support for ne3pg3 for 32 level aquaplanets and F-cases (details)
920. added support for ne5pg3 L32 F-cases (details)
921. add support for ne16np3 L32 F-cases (details)
922. add mpas 15 240 topo boundary data (details)
923. cp aherring files to standard directories (details)
924. add 58 level versions of SE initial files (details)
925. Use relative path in inputdata for HEMCO config file. (details)
926. build-namelist changes from Brian Eaton <eaton@ucar.edu> for ext_frc_specifier/srf_emis_specifier to be incompatible with use_hemco = .true., other comment changes (details)
927. Modify based on tuning 'f' and up PE count for MT compset (details)
928. Up PE layout to 50 for MT compsets (details)
929. Style fixes to address review comments (details)
930. Update HEMCO-CESM upstream to hemco-cesm1_1_5_hemco3_6_2_cesm for NAG compiler fixes (details)
931. Use 0.5x0.625 grid internally in HEMCO for se_refined_mesh grids (details)
932. Add model_top configure flag (details)
933. Draft ChangeLog (details)
934. remove MCT tests (details)
935. Adjust PE layout for MT run to one which works with restarts (details)
936. Address more review comments (details)
937. Update manage_externals (details)
938. fix nag scam test by removing mpi-serial setting (details)
939. update ChangeLog (details)
940. remove mpas files as we need to create new ones for updated bedmachine topography (details)
941. add initial 'c' for cycle count (details)
942. Revert "cam6_3_113: Update manage_externals" (details)
943. rename and update metadata for new coarse grid boundary data (details)
944. Update manage_externals (details)
945. clean up Externals and add ne3pg3 test to testlist (details)
946. Fix PR number (details)
947. ChangeLog update (details)
948. ChangeLog updates testing will have to be redone but I put some of my non pending results in there for now (details)
949. Add a few more namelists and remove PE layout for MT (details)
950. Update externals to cesm2_3_beta14 (details)
951. Update ChangeLog for cam6_3_114 (details)
952. Updates based on reviewer comments (details)
953. update hemco_config path to new for SMS test; update tests (details)
954. add microp_mg_dcs defaults to build-namelist (details)
955. Add additional namelist settings (details)
956. One more namelist cleanup (details)
957. WIP: Allow ovverride of  and DiagnFile using namelist properties within the CESM environment. (details)
958. Update build-namelist to include new namelist variables. (details)
959. Update HEMCO-CESM upstream to hemco-cesm1_2_0_hemco3_6_2_cesm (details)
960. Revert extra tests added for testing (details)
961. add O3S to waccm_ma_mam5 (details)
962. Updated Changelog to remove Externals.cfg from this PR since that file was updated in 6_3_114 (details)
963. Further refinement based on discussion at planning meeting (details)
964. Address additional reviewer comments (details)
965. one more reviewer change (details)
966. add pointers for intel performance, remove unused PI variable for nvhpc (details)
967. update Changelog for tagging (details)
968. update Changelog for tagging take 2 (details)
969. front_gaussian_wdith namelist param; set O3S_Loss rate; move O3S to explicit solver (details)
970. Add TOA fields for three fluxes (details)
971. corrections for waccmx (details)
972. add SF*** history fields only when needed (details)
973. Update LT file and remove ncdata files from use_cases (details)
974. ChangeLog for cam6_3_116 (details)
975. Update MT file (details)
976. remove SFNO2 from fincl lists in use case files (details)
977. dry dep diags only for species that have dry dep (details)
978. remove SFDMS history field from fincl (details)
979. Fix bad merge line (details)
980. Update ChangeLog for cam6_3_117 (details)
981. use SPS585 emissions; restrict default out of SF fields; shorten fincl1 lists in use cases (details)
982. hemco compsets not supported (details)
983. misc changes for Jesse's code review (details)
984. ChangeLog update (details)
985. correct typo (details)
986. ChangeLog draft (details)
987. add_default CT_H2O needs to be after addfld (details)
988. ChangeLog update (details)
989. set history_chemistry=.true. and shorten fincl1 list (details)
990. correction to fincl list (details)
991. more tweaks to fincl lists in waccm use cases (details)
992. update ChangeLog (details)
993. fix ChangeLog (details)
994. ChangeLog draft (details)
995. Updates bringing back in Larson-group updates lost in merge (details)
996. ChangeLog update (details)
997. merge in branch cam6_3_112_aeropts (details)
998. clean up (details)
999. do not extrapolate beyond the edges of the table (details)
1000. revert change to outfrq9s/user_nl_cam (details)
1001. ChangeLog draft (details)
1002. add stub subroutine get_lw_spectral_boundaries for building simple models (details)
1003. improve docs (details)
1004. Corrections to namelist settings (details)
1005. Corrections to default 10x15 camchem ic file (details)
1006. Recent changes needed to run current clubb checkout (details)
1007. ChangeLog update (details)
1008. ChangeLog update (details)
1009. Small bug fix (details)
1010. code review change requests (details)
1011. ChangeLog update (details)
1012. ChangeLog update (details)
1013. ChangeLog update (details)
1014. improves history write performance; (details)
1015. Update ALI-ARMS external (details)
1016. Preliminary ChangeLog (details)
1017. Final ChangeLog for cam6_3_123 (details)
1018. Fixing bugs. (details)
1019. Adding/modifying scripts to make things work. Also a good time to include BIT_CHANGING. (details)
1020. Update to jenkinsfiles (details)
1021. Update to jenkinsfiles again (details)
1022. Update to jenkinsfiles again (details)
1023. Small updates (details)
1024. Updates to run script (details)

initial changelog updates

address review comments; changelog updates

Update to head of larson-group cam

Changes for the nag compiler and less output

Namelist changes for Issue 467

Changes to address issues 467 and 461

fix deferred functions issue (for NAG)

        modified:   src/chemistry/aerosol/aerosol_properties_mod.F90
        modified:   src/chemistry/aerosol/aerosol_state_mod.F90
        modified:   src/chemistry/aerosol/modal_aerosol_properties_mod.F90
        modified:   src/chemistry/aerosol/modal_aerosol_state_mod.F90

Add restart capabilities and regression test

Add Hall and Pedersen Conductance diagnostics

        modified:   src/ionosphere/waccmx/edyn_init.F90
        modified:   src/ionosphere/waccmx/edyn_mpi.F90
        modified:   src/ionosphere/waccmx/edynamo.F90

        new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_conductance/shell_commands
        new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_conductance/user_nl_cam

Update externals to match cesm2_3_beta08

Preliminary ChangeLog

Remove EDYN_ZIGM2_HAL and EDYN_ZIGM11_PED, replace with HALL_CONDUCTANCE and PED_CONDUCTANCE

        modified:   bld/namelist_files/use_cases/1950-2010_ccmi_refc1_waccmx_ma.xml
        modified:   bld/namelist_files/use_cases/sd_waccmx_ma_cam4.xml
        modified:   bld/namelist_files/use_cases/sd_waccmx_ma_cam6.xml
        modified:   bld/namelist_files/use_cases/waccmx_ma_2000_cam6.xml
        modified:   bld/namelist_files/use_cases/waccmx_ma_hist_cam6.xml
        modified:   bld/namelist_files/use_cases/waccmxie_ma_2000_cam4.xml
        modified:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_conductance/user_nl_cam
        modified:   src/ionosphere/waccmx/edyn_init.F90
        modified:   src/ionosphere/waccmx/edynamo.F90

minor changes

        deleted:    cime_config/testdefs/testmods_dirs/cam/outfrq9s_conductance/shell_commands
        deleted:    cime_config/testdefs/testmods_dirs/cam/outfrq9s_conductance/user_nl_cam

        modified:   src/ionosphere/waccmx/edyn_init.F90
        modified:   src/ionosphere/waccmx/edynamo.F90

Update STARTDATE year from 0000 to 0001 to fix failure in CLM

Update ChangeLog

Minor updates

Setup ALI-ARMS regression test

update ccs_config_cesm tag

add nuopc restart change and associated test

move t_startf call

Fix for SD driven by ERA5 data (issue #207)

Need to check for fill_value in sea ice fraction for dry dep

        modified:   src/dynamics/fv/metdata.F90

specify PTS_MODE only for mct driver

a fix for limited num of emissions files (issue #538)

        modified:   src/chemistry/mozart/chemistry.F90
        modified:   src/chemistry/mozart/mo_extfrc.F90
        modified:   src/chemistry/mozart/mo_srf_emissions.F90

add log message with file names

        modified:   src/chemistry/mozart/mo_extfrc.F90
        modified:   src/chemistry/mozart/mo_srf_emissions.F90

Change sparse checkout to svn specific checkout

back out nuopc restart changes

fix typo in te_map

Oops, forgot the path to SILHS

initial changelog updates

adjust size of max_num_emis_files

        modified:   src/chemistry/mozart/chemistry.F90

add some documentation for properties interface

        modified:   src/chemistry/aerosol/aerosol_properties_mod.F90
        modified:   src/chemistry/aerosol/modal_aerosol_properties_mod.F90
        modified:   src/physics/cam/ndrop.F90

Add subsetting for columns

add some documentation for aerosol state interface

        modified:   src/chemistry/aerosol/aerosol_state_mod.F90
        modified:   src/chemistry/aerosol/modal_aerosol_state_mod.F90

Update HEMCO external to ESCOMP

updates cime external; update NTASKS for outfrq9s_refined_camchem

remove idphys tests; update outfrq3s_usecase tests to cover previous idphys tests; changelog updates

update ccs_config external; add mct tests for aquaplanet SCAM tests

Committing changes to carma_pmc/user_nl_cam and test_growth/carma_model_mod.F90

final changelog updates; return to old ccs_config tag; update atm_comp_nuopc to enable SCT tests to run

Assign nlev to pver and remove top_lev:nlev subsetting

Namelist updates and modifiers, adds Lscale option to config and ipdf_call_placement

Remove local state_loc_X variables and initialize a few more

Updates to defaults and remove some comments

Update open statements and change _OPENACC ifdef

Fix a few more missing :mgncol in call to micro_mg_cam

setting pmc test to ERS to avoid failure

changes to fix scam - also need a cmeps update

fix for multiday AMIE time interpolation bug

        modified:   src/ionosphere/waccmx/amie_module.F90

Re-doing Lscale namelist settings

Finish configure roll back, move acc directives, finish remove getunit, update cam_dev physpkg with changes from this PR

Fix SCT test script

Remove unneeded code

Additional cleanup and apply mods to cam_dev version

Further cleanup when differenced with cam6_3_055

Update CICE/CIME/CCS_CONFIG to make ERP run work properly

	modified:   Externals.cfg

Add new GPU test suite for PUMAS

	modified:   cime_config/testdefs/testlist_cam.xml
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/shell_commands
	renamed:    cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_casper/user_nl_cam -> cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_cam
	renamed:    cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_casper/user_nl_clm -> cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/user_nl_clm
	renamed:    cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_casper/shell_commands -> cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commands
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_cam
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/user_nl_clm
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commands
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_cam
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/user_nl_clm
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commands
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_cam
	new file:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/user_nl_clm

Update the test_driver for Casper

	modified:   test/system/test_driver.sh

Removing two more freeunit calls that snuck in there.

Fix issues introduced during cleanup

Put back a couple of intializations and correct another typo

initialize a couple of variables in cam_dev

Changed default clubb_l_e3sm_config to false

initial commit of ebudget code

add cam6_3_044 mods to dyn_grid and cam_grid_support to support writes to GLL grid

fix bug in budgeting logic when dynamic energy variables are not output to history

update externals

use longname for mct/cice5 tests

initial changelog updates

Use CLUBB's own clubb_l_do_expldiff_rtm_thlm only to control diffusion on rtm and thlm; eliminate duplicate flags clubb_expldiff and do_expldiff.

Update xmlchange command with Steve's suggestions

	modified:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg2_default/shell_commands
	modified:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_default/shell_commands
	modified:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_nondefault/shell_commands
	modified:   cime_config/testdefs/testmods_dirs/cam/outfrq9s_mg3_pcols1536/shell_commands

updates to the inline energy diagnostics including a new budgets module that handles the meta data involved in working with budgets similar to the way constituents are handled

update ccs_config external

scam fixes

update cice and ccs_config externals; add testing to changelog

fixes for SCT test

updated ccs_config

Cleaning up all of the namelist fields

clubb_e3sm should default to false

update externals; remove redundant mct tests

update Makefile to point to new genf90 location

bugfix missing set_dry_to_wet call

First review changes

fix typo in sct.py which accidentally introduced

Changes to address review comments

updates for misc tag includes #530 #543 #551 #506

update ChangeLog for PR

Limit arrays to PUMAS to levels which are being used

Initialize PUMAS output variables from above top_lev to top of atmosphere

Remove extra copy of tendency variables

Add same fixes to cam_dev version of micro_pumas_cam.F90

Add missing comma

A few more minor tweeks

New module, air_composition to control and
   initialize atmosphere composition
Starting to work on cam_thermo module for consistent
   model thermodynamics
Moved some code from physconst to air_composition
Moving some code from physconst to cam_thermo

Changes for the izumi nag tests

Changes to address peverwhee review

bld/namelist_files/namelist_definition.xml

Minor updates and update CICE6 external

Minor code reorganization

Address final reviewer's comments

Remove initializations which were not needed and did not work

remove grid size assumption of input data

        modified:   src/ionosphere/waccmx/ltr_module.F90

Put back in array of NaNs

ChangeLog update for cam6_3_057

replace lonmx and jmxm with lonp1 and latp1, respectively

        modified:   src/ionosphere/waccmx/ltr_module.F90

Make a few changes as indicated by patc

finish thermo refactor; now builds but doesn't run

Improve some documentation and other changes to appease reviewers

        modified:   src/chemistry/aerosol/aerosol_properties_mod.F90
        modified:   src/chemistry/aerosol/aerosol_state_mod.F90
        modified:   src/chemistry/aerosol/modal_aerosol_properties_mod.F90
        modified:   src/physics/cam/ndrop.F90

 Note: roundoff differences introduced in CCN diagnostics

add call to air_composition_readnl

fix typo

remove PASSed tests and add doi reference

Changing silhs namelist options to include subcol_silhs in the name

fix dimensions in cam_thermo, fix a couple of calls; change "N2" to "N"

rough prototype for DDT

fix dimensions in cam_thermo

use time_coordinate utility

        modified:   src/chemistry/utils/input_data_utils.F90
        modified:   src/ionosphere/waccmx/amie_module.F90

Responses to Jesse s review

Moving update from regular physpkg to cam_dev physpkg

Address some review comments

PR review updates

Add call to microp_aero_final in cam_dev/physpkg

        modified:   src/physics/cam_dev/physpkg.F90

Calculate pver_c using pref_mid during init

cam6_3_057 updates

update Changelog for PR

Last of Jesses review suggestions

Additional cleanup

One review fix and fixing clubb mf test errors

Had to roll back these changes to get everything working correctly

use time_coord in LTR reader; AMIE corrections to timing weights

        modified:   src/ionosphere/waccmx/amie_module.F90
        modified:   src/ionosphere/waccmx/ltr_module.F90

Removed wp2_pr_dfsn output field because it caused buildnamelist to hang

Updates for MPAS test and un-re-roll-back for clubb-mf tests

ChangeLog entry

Andrew original mods

ChangeLog entry for cam6_3_059

Minor updates

Put micro_pumas_cam.F90 changes in appropriate directory

ChangeLog entries

ChangeLog updates

Update PUMAS external to bring in required changes

scale sensible heat fluxes by exner

dry base state fixes, omega fixes, removed rho_in (redundant)

read Henry's law coeff, etc., from file

        modified:   bld/build-namelist
        modified:   bld/namelist_files/namelist_defaults_cam.xml
        modified:   bld/namelist_files/namelist_definition.xml
        modified:   src/chemistry/mozart/mo_neu_wetdep.F90

use the new shr_drydep_mod module

        modified:   src/cpl/mct/cam_cpl_indices.F90

more changes to use shr_drydep_mod module

        modified:   Externals.cfg
        modified:   src/chemistry/mozart/mo_chemini.F90
        modified:   src/chemistry/mozart/mo_drydep.F90
        modified:   src/chemistry/mozart/mo_neu_wetdep.F90
        modified:   src/control/camsrfexch.F90
        modified:   src/cpl/mct/atm_import_export.F90

added dqcore, ivt and clubb energy diagnostics

added time-step info to the log

use external branches

Committing changes prior to testing for tag

bug fixes to th, thv and rho, after clubb state update

Update namelist settings

fixed outfld for midpoint fields, change all units of g to kg, remove redundant outflds

quick typo fix

Address more reviewer's comments

Committing ChangeLog for new CAM tag

address bens comments

Removed old mg3 test and added two F2000dev tests with one mg3

changes to appease github reviewers

        modified:   src/dynamics/fv/metdata.F90

Add additional diagnostics

Separate namelist reads from advertise fields (PORT fix)

        modified:   src/cpl/nuopc/atm_comp_nuopc.F90
        modified:   src/cpl/nuopc/atm_import_export.F90

ChangeLog entry