Console Output

Started by an SCM change
Obtained jenkins_tests/cam_silhs_global_ERP_ln9_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_silhs_global_erp_ln9_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_silhs_global_erp_ln9_gfortran_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.30.2'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 5717a7d5868688cede77de0acdbe88cd12b070b9 (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 5717a7d5868688cede77de0acdbe88cd12b070b9 # timeout=10
Commit message: "Undoing some of the cherry picked changes. These seem related to moving the clubb and silhs code to different directories, which we would have to reflect in our git structure before including."
 > git rev-list --no-walk 9be0cef04a0a87e891e8274b1cefd661c25b0d0b # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_cam_coarse_res.py .
Checking out externals...
Copying cime config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Make cprnc)
[Pipeline] dir
Running in /home/jenkins/workspace/cam_silhs_global_erp_ln9_gfortran_test/cime/tools/cprnc
[Pipeline] {
[Pipeline] sh
+ bash -c 'export LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib; export INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include; ../configure --macros-format=Makefile --mpilib=mpi-serial --machine nelson; source ./.env_mach_specific.sh; make'
bash: line 1: ../configure: No such file or directory
bash: line 1: ./.env_mach_specific.sh: No such file or directory
make: *** No targets specified and no makefile found.  Stop.
[Pipeline] }
[Pipeline] // dir
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run CAM)
Stage "Run CAM" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.nelson_gnu.cam-silhs.*/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.nelson_gnu.cam-silhs.*/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made.
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 2
Finished: FAILURE