Started by user Gunther Huebler Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/cam_clubb_error_handling_test_branch@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_error_handling_test_branch@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/for_fill_holes_upgrade_withclubb^{commit} # timeout=10 Checking out Revision d50360267e838b62e59af63105f051a40292ffd9 (refs/remotes/origin/for_fill_holes_upgrade_withclubb) > git config core.sparsecheckout # timeout=10 > git checkout -f d50360267e838b62e59af63105f051a40292ffd9 # timeout=10 Commit message: "Adding clubb files for test" > git rev-list --no-walk 7a6cc7e3aa0ef50735b5054b90e1b898ee742f20 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/cam_clubb_error_handling_test_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_error_handling_test_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision d50360267e838b62e59af63105f051a40292ffd9 (refs/remotes/origin/for_fill_holes_upgrade_withclubb) Commit message: "Adding clubb files for test" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/for_fill_holes_upgrade_withclubb^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f d50360267e838b62e59af63105f051a40292ffd9 # timeout=10 + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run test script) [Pipeline] dir Running in /home/jenkins/workspace/cam_clubb_error_handling_test_branch/jenkins_tests/cam_clubb_error_handling_test [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ./cam_test_fatal_error_handling.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-856-gd50360267 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test_branch/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test_branch/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-11-13 00:53:17 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 00:53:18 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 00:53:18 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 00:53:18 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 00:53:18 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 00:53:18 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 00:53:18 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 00:53:18 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 00:53:18 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.251113-005317 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.251113-005317 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.251113-005317 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.251113-005317 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.251113-005317 Component lnd build complete with 4 warnings clm built in 58.157489 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.251113-005317 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.251113-005317 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.251113-005317 docn built in 0.630493 seconds cice built in 104.045047 seconds Component atm build complete with 110 warnings cam built in 129.317767 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.251113-005317 Total build time: 268.938641 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-11-13 00:57:47 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 00:57:47 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 00:57:47 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 00:57:47 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 00:57:47 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 00:57:47 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 00:57:47 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 00:57:47 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 00:57:47 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX 2025-11-13 00:57:48 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 00:57:49 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 00:57:49 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 00:57:49 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 00:57:49 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 00:57:49 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 00:57:49 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 00:57:49 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 00:57:49 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.251113-005748 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-856-gd50360267 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test_branch/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test_branch/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-11-13 00:58:04 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 00:58:05 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 00:58:05 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 00:58:05 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 00:58:05 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 00:58:05 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 00:58:05 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 00:58:05 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 00:58:05 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.251113-005804 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.251113-005804 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.251113-005804 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.251113-005804 Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.251113-005804 Component lnd build complete with 4 warnings clm built in 59.238043 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.251113-005804 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.251113-005804 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.251113-005804 docn built in 0.650348 seconds cice built in 114.365842 seconds Component atm build complete with 110 warnings cam built in 121.869390 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.251113-005804 Total build time: 261.999982 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-11-13 01:02:27 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 01:02:27 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 01:02:27 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 01:02:27 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 01:02:27 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 01:02:27 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 01:02:27 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 01:02:27 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 01:02:27 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX 2025-11-13 01:02:28 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-11-13 01:02:28 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-11-13 01:02:29 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cice//cime_config/buildnml 2025-11-13 01:02:29 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-11-13 01:02:29 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-11-13 01:02:29 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-11-13 01:02:29 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-11-13 01:02:29 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-11-13 01:02:29 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test_branch/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.251113-010228 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_wp2_wp3' found in log CAM CLUBB error handling test for advance_wp2_wp3 was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_xm_wpxp' found in log CAM CLUBB error handling test for advance_xm_wpxp was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS