Standards fix (#1288)* Fixing code to comply with clubb standards and making standards check output a little nicer* Fixing unused variable compiler errors* Removing ifdef GFDL option* A bit of cleanup* Little GPU fix* Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it* Adding missed cmake files* Improving various subroutine edits
Remove blank line to trigger git update script
Add blank line to trigger git update scripts