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Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision a64171b81dfe0bfd91289455c71c25230c5ecc6e (refs/remotes/origin/clubb_silhs_devel) > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f a64171b81dfe0bfd91289455c71c25230c5ecc6e # timeout=10 Commit message: "Autoupdated CLUBB_core Commit e430c6b5a72a8a88fa602e13b4cb946d3361895e Author: domkesteffen Date: Thu Jan 16 16:06:31 2025 -0600 Added new hole-filling method which takes TKE from up2 and vp2 (#1217) Added new hole-filling method which takes TKE from up2 and vp2 CLUBB ticket #1165" > git rev-list --no-walk b3c6f29d0d1a50b165ee1e44a515e6d23991285c # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config Cannot contact nelson: java.lang.InterruptedException ERROR: Unknown Job Queue specified use --force to set Error: Missing actual argument for argument 'l_wp2_fill_holes_tke' at (1) Error: Type mismatch in argument 'l_wp2_fill_holes_tke' at (1); passed TYPE(clubb_config_flags_type) to LOGICAL(4) ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/atm.bldlog.250117-033332 ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: a64171b81dfe0bfd91289455c71c25230c5ecc6e Found: BIT_CHANGING Checking Commit: a64171b81dfe0bfd91289455c71c25230c5ecc6e Checking out a64171b81dfe0bfd91289455c71c25230c5ecc6e Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: a64171b81dfe0bfd91289455c71c25230c5ecc6e There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out b3c6f29d0d1a50b165ee1e44a515e6d23991285c Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' Commit 'a64171b81dfe0bfd91289455c71c25230c5ecc6e' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = b3c6f29d0d1a50b165ee1e44a515e6d23991285c...a64171b81dfe0bfd91289455c71c25230c5ecc6e -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring a64171b81dfe0bfd91289455c71c25230c5ecc6e since it failed to produce output. =============================== Cleanup =============================== Removing all generated output REMOVING: b3c6f29d0d1a50b165ee1e44a515e6d23991285c ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: a64171b81dfe0bfd91289455c71c25230c5ecc6e Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS