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Started by user Steffen Domke Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec to read jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/800691b231d95c534d49060ef200db30805e761447d5de1a9dcea602b1366aec/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10 Checking out Revision a0dff77ed665e496a19cbf403fc063d89268fca7 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test) > git config core.sparsecheckout # timeout=10 > git checkout -f a0dff77ed665e496a19cbf403fc063d89268fca7 # timeout=10 Commit message: "Trying to eliminate the unnecessary output from sh script in Jenkins" > git rev-list --no-walk 3d26d9bde6a1820f03ec3eaeb79f6bd56b58b6ac # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_cam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/cam_clubb_error_handling_jenkins_test^{commit} # timeout=10 Checking out Revision a0dff77ed665e496a19cbf403fc063d89268fca7 (refs/remotes/origin/cam_clubb_error_handling_jenkins_test) > git config core.sparsecheckout # timeout=10 > git checkout -f a0dff77ed665e496a19cbf403fc063d89268fca7 # timeout=10 Commit message: "Trying to eliminate the unnecessary output from sh script in Jenkins" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] script [Pipeline] { [Pipeline] sh + rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ARM97 [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run test script) [Pipeline] dir Running in /home/jenkins/workspace/branch_cam_test/jenkins_tests/cam_clubb_error_handling_test [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ./cam_test_fatal_error_handling.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-851-ga0dff77e Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-13 13:54:19 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 13:54:20 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 13:54:20 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 13:54:20 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 13:54:20 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 13:54:20 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 13:54:20 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 13:54:20 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 13:54:20 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250513-135419 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250513-135419 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250513-135419 Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250513-135419 Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250513-135419 Component lnd build complete with 4 warnings clm built in 55.112147 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250513-135419 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250513-135419 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250513-135419 docn built in 0.885350 seconds cice built in 83.249657 seconds Component atm build complete with 110 warnings cam built in 92.479254 seconds Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250513-135419 Total build time: 236.808406 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-13 13:58:16 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 13:58:17 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 13:58:17 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 13:58:17 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 13:58:17 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 13:58:17 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 13:58:17 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 13:58:17 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 13:58:17 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX 2025-05-13 13:58:18 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 13:58:18 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 13:58:19 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 13:58:19 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 13:58:19 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 13:58:19 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 13:58:19 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 13:58:19 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 13:58:19 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250513-135818 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-851-ga0dff77e Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-13 13:58:31 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 13:58:31 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 13:58:32 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 13:58:32 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 13:58:32 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 13:58:32 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 13:58:32 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 13:58:32 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 13:58:32 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250513-135831 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250513-135831 Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250513-135831 Calling /home/jenkins/workspace/branch_cam_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250513-135831 Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250513-135831 Component lnd build complete with 4 warnings clm built in 56.872854 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250513-135831 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250513-135831 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250513-135831 docn built in 0.861323 seconds cice built in 84.766467 seconds Component atm build complete with 110 warnings cam built in 90.821479 seconds Building cesm from /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250513-135831 Total build time: 238.068757 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-13 14:02:30 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 14:02:30 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 14:02:30 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 14:02:30 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 14:02:30 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 14:02:30 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 14:02:30 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 14:02:30 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 14:02:30 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX 2025-05-13 14:02:31 atm Create namelist for component cam Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-13 14:02:31 lnd Create namelist for component clm Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-13 14:02:32 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml 2025-05-13 14:02:32 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_cam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-13 14:02:32 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-13 14:02:32 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-13 14:02:32 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-13 14:02:32 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_cam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-13 14:02:32 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_cam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250513-140231 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] sh + set +x CAM CLUBB error handling test for advance_wp2_wp3 was SUCCESSFUL [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] sh + set +x CAM CLUBB error handling test for advance_xm_wpxp was SUCCESSFUL [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS