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  1. Clubb JAX (#1351) (details)
Commit 53920ce2095c4b721f59936d5933dd6da8bcb590 by noreply
Clubb JAX (#1351)

* Testing new porting shortcut by creating a jax version of advance_xm_wpxp.py - it wen't well. Also updating the porting shortcut with more tips.

* Small update to porting shortcut

* Iterative improvements to porting shortcut

* Using porting script to port advance_xp2_xpyp in one go - still some issues that seems to require rerunning to fix issues, which is sad but maybe the best we can do with such a simple method

* Little bug fixes

* Updates to make the ports create better jax in the sense that it is more jit-ready

* Adding a more general plan to also use CLUBB-JAX and using it on advance_xm_wpxp

* Cleanup

* More properly jax-izing the current jax ports

* More formatting of ported jax code

* More formatting of ported jax code

* Updates in pursuit of full jit-compatibility

* Adding jit compile test

* Fully jitting advance_xp2_xpyp

* Copying parameter_indices from CLUBB-JAX but subtracting 1 to avoid -1 in code

* Little update to port shortcut

* Jitting and formatting CLUBB-JAX

* Mostly formatting

* Updating jax code

* Improving stats outputting

* Compile mono flux range loops with JAX

* Improvement to jax mixing length port

* Organizing stats code

* Making jax work on GPU

* Improvements to prescribe forcings code

* Mainly prescribe forcings formatting work

* Small improvements, getting rid of unneccesary weird jit statement

* Radiation porting completed. Bugsrad and silhs radiation were
intentionally left out for now.

* Removing stale code and adding a proposal.md file detailing a potential future feature to make the python_api work with current jax code

* Proper port of model flags and parameters and constants and such - those there were all kinda put into one file before

* new jenkinsfile added

* Tiny cleanup and adding back some stats outputs for microphysics that we need for some reason

* limited to only one process. Find out built time

* made jenkins jax tests faster by running them not so extensively

* Mainly working on README, also some other tiny things: changing default test stats list to standard instead of all_stats, and renaming run_jax.sh to run_jax_wrapper.sh

---------

Co-authored-by: Daniel Ebel <debel@uwm.edu>
The file was modifiedclubb_python_api/tests/test_udt_return_contract.py (diff)
The file was addedclubb_jax/src/CLUBB_core/sclr_idx.py
The file was addedclubb_jax/requirements-cuda13.txt
The file was addedclubb_jax/src/Microphys/KK_microphys/parameters_KK.py
The file was addedclubb_jax/tests/test_compute_sigma_sqd_w.py
The file was addedclubb_jax/src/CLUBB_core/Skx_module.py
The file was removedclubb_jax/clubb_standalone.py
The file was addedclubb_jax/src/Radiation/cos_solar_zen_module.py
The file was addedclubb_jax/src/Microphys/cloud_sed_module.py
The file was addedclubb_jax/src/Input_fields/hydrostatic_module.py
The file was addedclubb_jax/tests/test_calc_wp4_pdf.py
The file was addedclubb_jax/src/Benchmark_cases/neutral_case.py
The file was addedclubb_jax/src/Radiation/radiation_module.py
The file was addedclubb_jax/src/Microphys/advance_microphys_module.py
The file was addedclubb_jax/src/Radiation/BUGSrad/bugsrad_physconst.py
The file was addedjenkins_tests/compare_jax_vs_fortran/Jenkinsfile
The file was addedclubb_jax/src/Microphys/KK_microphys/KK_upscaled_means.py
The file was addedclubb_jax/src/Microphys/microphys_driver.py
The file was modifiedclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.py (diff)
The file was modifiedclubb_jax/JAX_CONVERSION_PLAN.md (diff)
The file was removedclubb_jax/radiation.py
The file was addedclubb_jax/tests/test_config_flags_complete.py
The file was addedclubb_jax/requirements.txt
The file was addedclubb_jax/src/CLUBB_core/sponge_layer_damping.py
The file was addedclubb_jax/tests/test_denorm_transform_corr.py
The file was addedclubb_jax/src/CLUBB_core/advance_xp2_xpyp_module.py
The file was addedclubb_jax/tests/test_clip_covar.py
The file was addedclubb_jax/src/CLUBB_core/stats_netcdf.py
The file was addedclubb_jax/src/__init__.py
The file was addedclubb_jax/src/Benchmark_cases/wangara.py
The file was addedclubb_jax/src/Microphys/gfdl_activation.py
The file was addedclubb_jax/src/CLUBB_core/clubb_precision.py
The file was addedclubb_jax/src/CLUBB_core/precipitation_fraction.py
The file was addedclubb_jax/src/CLUBB_core/LY93_pdf.py
The file was addedclubb_jax/src/Microphys/Morrison_microphys/module_mp_graupel.py
The file was modifiedLLM_prompts/update_python_api_and_drivers.md (diff)
The file was removedclubb_jax/advance_clubb_to_end.py
The file was addedclubb_jax/src/Benchmark_cases/arm_0003.py
The file was modifiedclubb_python_api/tests/test_stats.py (diff)
The file was addedclubb_jax/tests/test_pressure_coord_forcing.py
The file was addedclubb_jax/tests/test_pressure_sounding_z.py
The file was addedclubb_jax/tests/test_pdf_binormal_moments.py
The file was addedclubb_jax/tests/test_pdf_params_pack_roundtrip.py
The file was modifiedclubb_python_driver/clubb_case_initalization.py (diff)
The file was addedclubb_jax/src/CLUBB_core/diffusion.py
The file was addedclubb_jax/tests/test_radiation_module.py
The file was addedclubb_jax/tests/test_liq_water_path.py
The file was addedclubb_jax/tests/test_penta_faithful.py
The file was addedclubb_jax/src/CLUBB_core/stats_clubb_utilities.py
The file was addedclubb_jax/tests/test_penta_solver.py
The file was addedclubb_jax/src/CLUBB_core/remapping_module.py
The file was addedclubb_jax/src/Input_fields/sounding.py
The file was addedclubb_jax/tests/test_luhar_params.py
The file was addedclubb_jax/src/Radiation/soil_vegetation.py
The file was addedclubb_jax/src/Benchmark_cases/arm.py
The file was addedclubb_jax/tests/test_morrison_special.py
The file was addedclubb_jax/src/Benchmark_cases/nov11.py
The file was addedclubb_jax/src/CLUBB_core/parameters_tunable.py
The file was addedclubb_jax/src/Microphys/kk_microphys_step.py
The file was addedclubb_jax/src/Radiation/BUGSrad/comscp1.py
The file was addedclubb_jax/src/Benchmark_cases/mpace_a.py
The file was addedclubb_jax/tests/test_transform_pdf_chi_eta_component.py
The file was addedclubb_jax/src/Benchmark_cases/astex_a209.py
The file was modifiedclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.py (diff)
The file was modifiedclubb_python_api/clubb_python/clubb_api.py (diff)
The file was addedclubb_jax/tests/test_calc_xpthvp_terms.py
The file was addedclubb_jax/src/CLUBB_core/stats_metadata.py
The file was addedclubb_jax/tests/test_kk_upscaled_variances.py
The file was addedclubb_jax/tests/test_advance_helper_extras.py
The file was modifiedLLM_prompts/SHORTCUTS.md (diff)
The file was addedclubb_jax/src/CLUBB_core/advance_clubb_core_module.py
The file was addedclubb_jax/src/CLUBB_core/tridiag_lu_solver.py
The file was addedclubb_jax/src/advance_clubb_to_end.py
The file was addedclubb_jax/src/CLUBB_core/nu_vert_res_dep.py
The file was addedclubb_jax/src/Benchmark_cases/gabls2.py
The file was addedclubb_jax/src/Benchmark_cases/dycoms2_rf02.py
The file was addedclubb_jax/tests/test_update_xp2_mc.py
The file was addedclubb_jax/tests/test_saturation.py
The file was addedclubb_jax/tests/test_solver.py
The file was addedclubb_jax/src/Benchmark_cases/cloud_feedback.py
The file was addedclubb_jax/src/CLUBB_core/advance_windm_edsclrm_module.py
The file was addedclubb_jax/tests/test_sunray_sw.py
The file was addedclubb_jax/src/CLUBB_core/parameter_indices.py
The file was addedclubb_jax/tests/test_calc_xprcp_component.py
The file was addedclubb_jax/src/CLUBB_core/new_hybrid_pdf.py
The file was addedclubb_jax/tests/test_bivar_LL_covar_partial.py
The file was addedclubb_jax/tests/test_set_sfc_value_of_flux_profiles.py
The file was modifiedclubb_python_api/clubb_python/derived_types/err_info.py (diff)
The file was addedclubb_jax/tests/test_calc_wp3_on_wp2.py
The file was addedclubb_jax/tests/test_lba_sfclyr.py
The file was addedclubb_jax/src/Benchmark_cases/atex.py
The file was addedclubb_jax/src/Microphys/ice_dfsn_module.py
The file was addedclubb_jax/src/CLUBB_core/calc_roots.py
The file was addedclubb_jax/tests/test_quadrivar_NNLL_covar_eq_swap.py
The file was addedclubb_jax/tests/test_radiation_port_structure.py
The file was addedclubb_jax/src/CLUBB_core/Nc_Ncn_eqns.py
The file was addedclubb_jax/src/Benchmark_cases/bomex.py
The file was addedclubb_jax/src/Microphys/KK_microphys_module.py
The file was addedclubb_jax/src/Radiation/BUGSrad/newexp.py
The file was addedclubb_jax/tests/test_limits_f_x_responder.py
The file was addedclubb_jax/tests/test_hydrostatic.py
The file was removedclubb_jax/io/grid_file.py
The file was addedclubb_jax/tests/test_close_luhar_pdf.py
The file was addedclubb_jax/src/Microphys/KK_microphys/PDF_integrals_covar.py
The file was addedclubb_jax/src/Radiation/BUGSrad/gases_ckd_data.py
The file was addedclubb_jax/src/Benchmark_cases/ekman.py
The file was addedclubb_jax/src/Benchmark_cases/fire.py
The file was addedclubb_jax/tests/test_pdf_moment_integrals.py
The file was addedclubb_jax/tests/test_new_pdf_main.py
The file was addedclubb_jax/tests/test_adg2_driver.py
The file was modifiedclubb_jax/__init__.py (diff)
The file was removedclubb_jax/advance_clubb_core.py
The file was addedclubb_jax/tests/test_fill_holes_mean.py
The file was modified.gitignore (diff)
The file was addedclubb_jax/tests/test_kk_rico_oracle.py
The file was addedclubb_jax/tests/test_stats_writer.py
The file was addedclubb_jax/tests/test_calc_pdf_chi_mean_var.py
The file was addedclubb_jax/src/CLUBB_core/hydromet_pdf_parameter_module.py
The file was addedclubb_jax/tests/test_adg1_adg2_responder_params.py
The file was addedclubb_jax/src/Radiation/bugsrad_driver.py
The file was addedclubb_jax/tests/test_comp_corr_norm.py
The file was addedclubb_jax/tests/test_fill_holes_global.py
The file was addedclubb_jax/tests/test_pdf_utilities.py
The file was addedclubb_jax/src/Input_fields/input_reader.py
The file was addedclubb_jax/src/Radiation/BUGSrad/cloudg.py
The file was addedclubb_jax/tests/test_cloud_drop_sed.py
The file was addedclubb_jax/src/Input_fields/input_names.py
The file was addedclubb_jax/tests/test_stats_output_time.py
The file was addedclubb_jax/src/CLUBB_core/err_info.py
The file was addedclubb_jax/tests/test_bivar_LL_covar_partial_rr_Nr.py
The file was addedclubb_jax/tests/test_NNL_covar_vs_MM.py
The file was addedclubb_jax/tests/test_gabls3_night_stability.py
The file was addedclubb_jax/tests/test_new_tsdadg_pdf.py
The file was addedclubb_jax/tests/test_KK_Nrm_tendencies.py
The file was addedclubb_jax/tests/test_calc_corr_w_hm_n.py
The file was addedclubb_jax/src/Input_fields/namelist.py
The file was removedclubb_jax/io/surface.py
The file was addedclubb_jax/tests/test_no_dead_imports.py
The file was removedclubb_jax/clubb_case_initalization.py
The file was addedclubb_jax/tests/test_max_cubic_root.py
The file was addedclubb_jax/src/Microphys/morrison_microphys_step.py
The file was addedclubb_jax/src/Microphys/KK_microphys/__init__.py
The file was addedclubb_jax/tests/test_clip_skewness.py
The file was addedclubb_jax/src/Microphys/KK_microphys/KK_utilities.py
The file was addedclubb_jax/tests/test_cloud_correlate.py
The file was addedclubb_jax/tests/test_sponge_damp_xp23.py
The file was modifiedLLM_prompts/port_underlying_fortran_to_other_languages.md (diff)
The file was addedclubb_jax/src/CLUBB_core/numerical_check.py
The file was addedclubb_jax/tests/test_diagnostic_cache.py
The file was addedclubb_jax/tests/test_xp2_xpyp_terms.py
The file was addedclubb_jax/tests/test_simple_rad_lba.py
The file was addedclubb_jax/tests/test_f2py_advance_xm_wpxp.py
The file was addedclubb_jax/tests/test_pdf_params_init.py
The file was addedclubb_jax/src/CLUBB_core/new_tsdadg_pdf.py
The file was addedclubb_jax/src/CLUBB_core/tracer_numpy.py
The file was addedclubb_jax/src/CLUBB_core/new_hybrid_pdf_main.py
The file was addedclubb_jax/src/CLUBB_core/advance_helper_module.py
The file was addedclubb_jax/src/CLUBB_core/mean_adv.py
The file was addedclubb_jax/src/Input_fields/surface.py
The file was addedclubb_jax/src/Radiation/__init__.py
The file was addedclubb_jax/src/Benchmark_cases/gabls3.py
The file was addedclubb_jax/src/Benchmark_cases/spec_hum_to_mixing_ratio.py
The file was addedclubb_jax/tests/test_new_hybrid_pdf_main.py
The file was addedclubb_jax/tests/test_compute_rtp2_from_chi.py
The file was addedclubb_jax/src/Benchmark_cases/lba.py
The file was addedclubb_jax/src/Radiation/BUGSrad/two_rt_sw.py
The file was addedclubb_jax/tests/test_param_names.py
The file was addedclubb_jax/tests/test_sfc_flux.py
The file was addedclubb_jax/src/CLUBB_core/pdf_params.py
The file was addedclubb_jax/tests/test_sfc_varnce.py
The file was addedclubb_jax/src/Benchmark_cases/arm_97.py
The file was addedclubb_jax/tests/test_morrison_rates.py
The file was addedclubb_jax/src/CLUBB_core/advance_xm_wpxp_module.py
The file was addedclubb_jax/tests/test_clip_variance.py
The file was addedclubb_jax/tests/test_silhs_surface_schemes.py
The file was addedclubb_jax/tests/test_compute_xp3.py
The file was addedclubb_jax/tests/test_soil_vegetation.py
The file was addedclubb_jax/src/CLUBB_core/model_flags.py
The file was addedclubb_jax/tests/test_bugsrad.py
The file was addedclubb_jax/src/Benchmark_cases/arm_3year.py
The file was addedclubb_jax/src/CLUBB_core/advance_wp2_wp3_module.py
The file was addedclubb_jax/src/Microphys/KK_microphys/KK_upscaled_variances.py
The file was addedclubb_jax/tests/test_hydrometeor_mixed_moments.py
The file was addedclubb_jax/tests/test_calculate_thvm.py
The file was addedclubb_jax/src/CLUBB_core/constants_clubb.py
The file was addedclubb_jax/src/Radiation/BUGSrad/gases_ckd.py
The file was addedclubb_jax/tests/test_spurious_source.py
The file was addedclubb_jax/src/Microphys/Morrison_microphys/__init__.py
The file was addedclubb_jax/src/Radiation/BUGSrad/two_rt_lw.py
The file was addedclubb_jax/tests/test_routine_placement.py
The file was addedclubb_jax/src/Radiation/parameters_radiation.py
The file was addedclubb_jax/src/CLUBB_core/saturation.py
The file was addedclubb_jax/src/CLUBB_core/interpolation.py
The file was addedclubb_jax/tests/test_calc_roots.py
The file was addedclubb_jax/src/CLUBB_core/mono_flux_limiter.py
The file was addedclubb_jax/tests/test_corr_varnce.py
The file was addedclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.py
The file was addedclubb_jax/src/Input_fields/grid_file.py
The file was addedclubb_jax/tests/test_no_dead_functions.py
The file was addedclubb_jax/tests/test_covar_KK_mixt_frac_linearity.py
The file was addedclubb_jax/src/Benchmark_cases/rico.py
The file was addedclubb_jax/tests/test_standalone_jax.py
The file was addedclubb_jax/tests/test_bivar_LL_mean_const.py
The file was addedclubb_jax/src/CLUBB_core/config_flags.py
The file was addedclubb_jax/tests/test_calc_corr_norm_cholesky.py
The file was addedclubb_jax/tests/test_advance_xp3_simplified.py
The file was addedclubb_jax/tests/test_grid_operators.py
The file was addedclubb_jax/tests/test_calendar.py
The file was addedclubb_jax/tests/test_wp2_wp3_terms.py
The file was addedclubb_jax/tests/test_calc_liquid_cloud_frac_component.py
The file was addedclubb_jax/tests/test_calc_pdf_skewness_diagnostics.py
The file was addedclubb_jax/tests/test_hydromet_pdf_parameter.py
The file was removedclubb_jax/io/__init__.py
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The file was addedclubb_jax/tests/test_gfdl_activation.py
The file was modifiedclubb_python_api/tests/test_call_tree_mono_flux.py (diff)
The file was addedclubb_jax/tests/test_setter_var_params.py
The file was addedclubb_jax/src/Radiation/BUGSrad/cloud_correlate.py
The file was addedclubb_jax/tests/test_xm_wpxp_terms.py
The file was addedclubb_jax/tests/test_Nc_Ncn_eqns.py
The file was addedclubb_jax/tests/test_forcing_port_structure.py
The file was addedclubb_jax/src/CLUBB_core/clip_explicit.py
The file was addedclubb_python_api/JAX_INTEROPERABILITY_PROPOSAL.md
The file was addedclubb_jax/src/CLUBB_core/err_info_codes.py
The file was modifiedclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py (diff)
The file was addedclubb_jax/tests/test_compute_gamma_skw.py
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The file was addedclubb_jax/tests/test_read_surface_var_for_bc.py
The file was modifiedclubb_python_api/tests/test_init_sequence.py (diff)
The file was addedclubb_jax/src/clubb_case_initalization.py
The file was addedclubb_jax/tests/test_pos_definite.py
The file was addedclubb_jax/src/Microphys/__init__.py
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The file was addedclubb_jax/tests/test_T_in_K.py
The file was modifiedclubb_python_driver/advance_clubb_core.py (diff)
The file was addedclubb_jax/src/CLUBB_core/__init__.py
The file was addedclubb_jax/tests/test_cloud_feedback_sfclyr.py
The file was addedclubb_jax/src/CLUBB_core/diagnose_correlations_module.py
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The file was addedclubb_jax/src/Benchmark_cases/cobra.py
The file was modifiedclubb_python_api/clubb_python/CLUBB_core/error_code.py (diff)
The file was addedclubb_jax/tests/test_error_code.py
The file was addedclubb_jax/src/CLUBB_core/corr_varnce_module.py
The file was addedclubb_jax/tests/test_mirror_lower_triangular.py
The file was addedclubb_jax/tests/test_xm_correction_wpxp_cl.py
The file was modifiedsrc/CLUBB_core/stats_netcdf.F90 (diff)
The file was addedclubb_jax/src/Microphys/mixed_moment_PDF_integrals.py
The file was addedclubb_jax/tests/test_binormal_moments.py
The file was addedclubb_jax/tests/test_responder_params.py
The file was modifiedtests/run_python_vs_fortran_cases.py (diff)
The file was addedclubb_jax/tests/test_simple_rad.py
The file was removedclubb_jax/io/namelist.py
The file was modifiedrun_scripts/run_scm.py (diff)
The file was addedclubb_jax/src/CLUBB_core/calendar.py
The file was addedclubb_jax/src/CLUBB_core/T_in_K_module.py
The file was addedclubb_jax/tests/test_mean_vert_vel_up_down.py
The file was addedclubb_jax/src/CLUBB_core/advance_xp3_module.py
The file was addedclubb_jax/src/Benchmark_cases/__init__.py
The file was addedclubb_jax/src/CLUBB_core/sfc_varnce_module.py
The file was addedclubb_jax/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.py
The file was addedclubb_jax/tests/test_new_pdf.py
The file was addedclubb_jax/tests/test_skx_func.py
The file was addedclubb_jax/tests/test_diagnose_upxp.py
The file was addedclubb_jax/tests/test_calc_ice_cloud_frac_component.py
The file was addedclubb_jax/tests/test_mono_flux_limiter.py
The file was addedclubb_jax/tests/test_remapping_module.py
The file was modifiedclubb_python_api/clubb_python/derived_types/err_info_converter.py (diff)
The file was addedclubb_jax/tests/test_jit_compile.py
The file was addedclubb_jax/src/Input_fields/__init__.py
The file was addedclubb_jax/tests/test_rad_extended_atmosphere.py
The file was addedclubb_jax/src/Benchmark_cases/diag_ustar_module.py
The file was addedclubb_jax/tests/test_constants.py
The file was addedclubb_jax/tests/test_calculate_w_responder_params.py
The file was modifiedclubb_jax/README.md (diff)
The file was addedclubb_jax/src/Microphys/KK_microphys/KK_local_means.py
The file was addedclubb_jax/tests/test_NNL_covar_const_limits.py
The file was addedclubb_jax/tests/test_smooth_heaviside.py
The file was addedclubb_jax/tests/test_differentiability.py
The file was addedclubb_jax/src/Microphys/morrison_microphys_module.py
The file was addedclubb_jax/src/Benchmark_cases/prescribe_forcings.py
The file was addedclubb_jax/src/Benchmark_cases/jun25.py
The file was addedclubb_jax/tests/test_xpyp_term_ta_godunov.py
The file was addedclubb_jax/tests/test_bivar_NL_mean_eq.py
The file was addedclubb_jax/tests/test_cholesky_factor.py
The file was modifiedclubb_python_api/README.md (diff)
The file was addedclubb_jax/tests/test_w_up_in_cloud.py
The file was addedclubb_jax/src/CLUBB_core/file_functions.py
The file was removedclubb_jax/io/sounding.py
The file was addedclubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.py
The file was addedclubb_jax/tests/test_kk_autoconversion.py
The file was addedclubb_jax/src/Microphys/KK_microphys/PDF_integrals_all_MM.py
The file was addedclubb_jax/src/CLUBB_core/grid_class.py
The file was addedclubb_jax/src/Radiation/BUGSrad/bugs_rad.py
The file was addedclubb_jax/tests/test_luhar_3d_driver.py
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