Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/clubb_BFB_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision d20fd1daad5e5d921607794e258bfde151fd3c89 (refs/remotes/origin/master) Commit message: "Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables." > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f d20fd1daad5e5d921607794e258bfde151fd3c89 # timeout=10 > git rev-list --no-walk bdee6e6dbac76a996cdf73a88522c47affdd4d90 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config Directory 1 is d20fd1daad5e5d921607794e258bfde151fd3c89 Directory 2 is bdee6e6dbac76a996cdf73a88522c47affdd4d90 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/arm_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file arm_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/arm_97_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file arm_97_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/atex_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file atex_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/bomex_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file bomex_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/dycoms2_rf01_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file dycoms2_rf01_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/dycoms2_rf02_ds_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file dycoms2_rf02_ds_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/gabls3_night_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file gabls3_night_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/lba_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file lba_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case lba.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/rico_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file rico_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case rico.<<< ********************************************************************************************************** ###DIFFING twp_ice netCDF (*.nc) files### >The linux diff detected differences in twp_ice_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/twp_ice_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file twp_ice_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case twp_ice.<<< ********************************************************************************************************** ###DIFFING wangara netCDF (*.nc) files### >The linux diff detected differences in wangara_stats.nc< d20fd1daad5e5d921607794e258bfde151fd3c89/wangara_stats.nc contains the following extra variables: param_name >>No differences detected in the common fields in file wangara_stats.nc<< >>>Differences in linux diff but no differences in common variables detected for case wangara.<<< ********************************************************************************************************** SUMMARY: Differences detected by linux diff but no differences in the common variables of the netCDF files compared. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_gfortran_test Using /home/jenkins/workspace/clubb_BFB_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: cbaf3b7cad36f5843a53f7e5ce77943ca7cc64c9 Parsing message from commit: 49bd72c6b6ee57f27c7694b25facd1b0eb91bd09 Parsing message from commit: d3c5a22e8d71e7224d34ffe7c7d2276679df7492 Parsing message from commit: d20fd1daad5e5d921607794e258bfde151fd3c89 Checking Commit: cbaf3b7cad36f5843a53f7e5ce77943ca7cc64c9 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 49bd72c6b6ee57f27c7694b25facd1b0eb91bd09 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: d3c5a22e8d71e7224d34ffe7c7d2276679df7492 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: d20fd1daad5e5d921607794e258bfde151fd3c89 Running: final commit to check, not labelled BIT_CHANGING Checking out d20fd1daad5e5d921607794e258bfde151fd3c89 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases' Checking out bdee6e6dbac76a996cdf73a88522c47affdd4d90 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'python run_scripts/run_scm_all.py -min_cases' Diffing: 'run_scripts/run_bindiff_all.py d20fd1daad5e5d921607794e258bfde151fd3c89 bdee6e6dbac76a996cdf73a88522c47affdd4d90' =============================== Test Results =============================== Commit Range Checked = bdee6e6dbac76a996cdf73a88522c47affdd4d90...d20fd1daad5e5d921607794e258bfde151fd3c89 No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: d20fd1daad5e5d921607794e258bfde151fd3c89 =============================== Cleanup =============================== Removing all generated output REMOVING: bdee6e6dbac76a996cdf73a88522c47affdd4d90 REMOVING: d20fd1daad5e5d921607794e258bfde151fd3c89 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS