+ csh nightly_test/nightly_e3sm_ne4_silhs.csh
run_e3sm: ++++++++ run_e3sm starting (Wed Dec 29 16:51:57 CST 2021), version 3.0.22 ++++++++
run_e3sm: $case_name = nelson.mg2_def.ne4_ne4
run_e3sm: -------- Starting create_newcase --------
run_e3sm: /home/jenkins/workspace/branch_e3sm_test//cime/scripts/create_newcase --case nelson.mg2_def.ne4_ne4 --compset FC5AV1C-L --script-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts --res ne4_ne4 --pecount M --handle-preexisting-dirs u --mach nelson --output-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 --project condo
Compset longname is 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml
Automatically adding SIAC to compset
Automatically adding SESP to compset
Compset forcing is
Com forcing is present day:
ATM component is cam5 physics:EAM with complete set of E3SM atmospheric mods for V1 (72 layers model) and ACES4BGC SOAG emissions- v04p2:
LND component is clm4.5 physics:clm4.5 Satellite phenology:clm4.5 Satellite phenology with black carbon deposition:
ICE component is prescribed cice:
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
IAC component is Stub iac component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml
Machine is nelson
Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240
Pes setting: compset is 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP
Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_ICE': 16, 'NTASKS_CPL': 16, 'NTASKS_LND': 16, 'NTASKS_WAV': 16, 'NTASKS_ROF': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16}
Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1}
Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_EAM%AV1C-L_ELM%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP
Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240
Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp']
No charge_account info available, using value from PROJECT
e3sm model version found: ba62388
Batch_system_type is none
Creating Case directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts
run_e3sm: -------- Finished create_newcase --------
run_e3sm: Project used for submission: condo
run_e3sm: Configuring E3SM to use the COSP simulator.
run_e3sm: -------- Starting case.setup --------
run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.setup
Successfully cleaned env_mach_specific.xml
/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/env_mach_specific.xml already exists, delete to replace
Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.7.0-gfortran
Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.4.5-gfortran
Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.7.0-gfortran
Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib
Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/include
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive
Creating file case.st_archive
Creating file .case.run.sh
Creating user_nl_xxx files for components and cpl
If an old case build already exists, might want to run 'case.build --clean' before building
Generating component namelists as part of setup
2021-12-29 16:52:06 atm
Create namelist for component eam
Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml
2021-12-29 16:52:06 lnd
Create namelist for component elm
Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml
2021-12-29 16:52:06 ice
Create namelist for component cice
Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml
2021-12-29 16:52:07 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml
2021-12-29 16:52:07 rof
Create namelist for component srof
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml
2021-12-29 16:52:07 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml
2021-12-29 16:52:07 wav
Create namelist for component swav
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml
2021-12-29 16:52:07 iac
Create namelist for component siac
Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml
2021-12-29 16:52:07 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml
2021-12-29 16:52:07 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml
You can now run './preview_run' to get more info on how your case will be run
run_e3sm: -------- Finished case.setup --------
run_e3sm: Creating logical links to make navigating easier.
run_e3sm: Note: Beware of using ".." with the links, since the behavior of shell commands can vary.
run_e3sm: /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link
run_e3sm: run_root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4
run_e3sm: run_dir /home/jenkins/workspace/branch_e3sm_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link
setting case file to env_run.xml
run_e3sm: -------- Starting Build --------
run_e3sm: WARNING: Make sure there are no double-slashes (//) in the build command below: => Will cause a build error
run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.build
Building case in directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts
sharedlib_only is False
model_only is False
Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.7.0-gfortran
Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.4.5-gfortran
Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.7.0-gfortran
Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib
Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/include
Generating component namelists as part of build
2021-12-29 16:52:08 atm
Create namelist for component eam
Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml
2021-12-29 16:52:08 lnd
Create namelist for component elm
Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml
2021-12-29 16:52:08 ice
Create namelist for component cice
Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml
2021-12-29 16:52:08 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml
2021-12-29 16:52:08 rof
Create namelist for component srof
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml
2021-12-29 16:52:08 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml
2021-12-29 16:52:08 wav
Create namelist for component swav
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml
2021-12-29 16:52:08 iac
Create namelist for component siac
Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml
2021-12-29 16:52:08 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml
2021-12-29 16:52:08 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml
Building gptl with output to file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gptl.bldlog.211229-165208
Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl
ERROR: /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl FAILED, cat /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/gptl.bldlog.211229-165208
The case.build step failed.
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