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+ compile/compile.bash -c config/linux_x86_64_gfortran.bash
......................................................................................................................................................................... Make.clubb_lapack is ready.
............................................................................... Make.clubb_param is ready.
......................... Make.clubb_bugsrad is ready.
... Make.microphys_utils is ready.
..... Make.clubb_parabolic is ready.
.............. Make.clubb_KK_microphys is ready.
................................................. Make.clubb_coamps is ready.
... Make.clubb_morrison is ready.
... Make.clubb_gfdlact is ready.
............. Make.silhs is ready.
.................................................................. Make.clubb_other is ready.
... Make.clubb_standalone is ready.
... Make.clubb_thread_test is ready.
............ Make.clubb_tuner is ready.
... Make.jacobian is ready.
................ Make.G_unit_tests is ready.
... Make.int2txt is ready.
cd /home/jenkins/workspace/branch_clubb_test/compile/../obj; make -f Make.clubb_param
cd /home/jenkins/workspace/branch_clubb_test/compile/../obj; make -f Make.clubb_gfdlact
make[1]: Entering directory '/home/jenkins/workspace/branch_clubb_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2  -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/SCM_Activation/aer_ccn_act_k.F90
make[1]: Entering directory '/home/jenkins/workspace/branch_clubb_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/clubb_precision.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/error_code.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/model_flags.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameter_indices.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_names.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_model.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/array_index.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stat_file_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/endian.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/lapack_interfaces.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/code_timer_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/mt95.f90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/constants_clubb.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_type.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/calendar.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_hybrid_pdf.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/pdf_parameter_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/pdf_utilities.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/matrix_operations.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/index_mapping.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
ar rv /home/jenkins/workspace/branch_clubb_test/compile/../lib/libclubb_gfdlact.a aer_ccn_act_k.o
ar: creating /home/jenkins/workspace/branch_clubb_test/compile/../lib/libclubb_gfdlact.a
a - aer_ccn_act_k.o
make[1]: Leaving directory '/home/jenkins/workspace/branch_clubb_test/obj'
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/lapack_wrap.F90
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/calc_roots.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90:545:19:

  545 |     integer :: k, i    ! loop variable
      |                   1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/parameters_tunable.F90:2558:32:

 2558 |   subroutine init_parameters_999( &
      |                                ^
Warning: ‘init_parameters_999’ defined but not used [-Wunused-function]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_tsdadg_pdf.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/new_pdf.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/LY93_pdf.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/T_in_K_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/saturation.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/diagnose_correlations_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/hydromet_pdf_parameter_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/clip_semi_implicit.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/sigma_sqd_w_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/Nc_Ncn_eqns.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/file_functions.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/interpolation.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_variables.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_type_utilities.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c -I/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_grads.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_reader.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/input_reader.F90:498:28:

  491 |     do i=1, dim_grid
      |                    2        
......
  498 |         if ( grid(i) < grid(i-1) ) then
      |                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90:1432:16:

 1432 |     integer :: i
      |                1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/grid_class.F90:1272:16:

 1272 |     integer :: i
      |                1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/precipitation_fraction.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/stats_sfc_module.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DTUNER -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/ -march=native -msse3 -mfpmath=sse -fopenmp -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=nan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O2 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c	/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_netcdf.F90
f951: Warning: Nonexistent include directory ‘/usr/local/NETCDF-Fortran-4.4.5-gfortran/include/’ [-Wmissing-include-dirs]
/home/jenkins/workspace/branch_clubb_test/compile/../src/CLUBB_core/output_netcdf.F90:42:9:

   42 |     use netcdf, only: &
      |         1
Fatal Error: Cannot open module file ‘netcdf.mod’ for reading at (1): No such file or directory
compilation terminated.
make[1]: *** [Make.clubb_param:112: output_netcdf.o] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/home/jenkins/workspace/branch_clubb_test/obj'
make: *** [Makefile:14: libclubb_param.a] Error 2