Changes

Possible fix for tuning test

Adding intel source vars line to netcdf install script. Also changing hard coded version to latest, which is a symbolic link so should always be useable. larson-group/sys_admin#738

Making check to see if baseline output exists before trying to delete.

Adding a sed command to the budget_balance bash script that will always set the l_lmm_stepping flag to false, since that flag does not currently give balanced budgets.

See https://github.com/larson-group/clubb/issues/893#issuecomment-905712817.

Changing iptables script to look at the correct files for the new computer configuration.

Updating iptables_patrol.bash script for Pop_OS! log file locations.

Moving old_carson's apache comfiguration files to subfolder incase we need to access them again.

Modifying apache_backup.bash to point to the new carson apache2 configuration files for backup.

Updating rc.netfilter to work with new carson.

Changing deploy script sys_admin configuration to have the correct iptables save sommand for new carson.

Adding comma at end of config json to allow it to work.

Final change to the deploy script sys_admin config fixing the post steps for all computers to allow full through run.

Making it so we only use commits tracked back from a single parent tree.

Fixing bug.

Automated apache config backup.

Adding final status message and updating example config file.

Small tweaks for bug prevention

I clarified the usage of the deploy script.

Changing script to check once per day for attempts at access. #756

Changing devtoolset to version 10

Updating gfortran compiler and added flag needed for a complete run.

Updating scripts

Changing git checkout command to git reset --hard, since that will wipe away changes caused by run commands if any are present. larson-group/sys_admin#763

Add a few words to make it easier to find unresolved commits.

Adding stephens_2022_paper branch to script.

Updating NetCDF paths to match the current version on Carson. #763

Automated nightly tests backup.

Add path for old version of gfortran, needed for E3SM.

Automated apache config backup.

Adding features to nightly test suite. larson-group/sys_admin#38

Copy Brian's latest merge of CLUBB into E3SM into the e3sm_release repo

See larson-group/e3sm#46

Updating the NetCDF Fortran version.

New carson has version 4.5.3 or NETCDF Fortran installed which may be preventing the CAM nightly tests from properly running. I've updated it from 4.4.5 to the proper version for new carson. #763

Automated nightly tests backup.

Adding functionality to recognize empty output directories, and also ignore failed runs when updating the baseline commit. larson-group/e3sm#38

Remove pycache file.

Adding in the login shell option to both nightly_config.sh's and nightly_tests.bash's shebang to allow the use of environment variables.

Automated nightly tests backup.

Changes "components/cam" to "components/eam" 

so that we can update the new clubb_silhs_devel branch in E3SM.

Making it so that when the test exits because the baseline and final commit are the same, it does not result in an error when the unresolved list is empty. Before, it resulted in an error no matter what.

Automated apache config backup.

Automated nightly tests backup.

Automated apache config backup.

Adding execute permissions to the bacula_backup.bash script.

Automated bacula config backup.

Changing the monthly script to check surplus_storage instead of Archive

Updating to include flags for PopOS install.

Uncommenting ZLIB step to help with the install script.

Automated bacula config backup.

Updating iptables_patrol.bash to actually count the Dropping messages.

Previously for the computers with a week long iptables check they were either not working correctly or grepping only one day. I added in a for loop to count through each day and add the result of each day together.

Correcting the file we are checking for Pop OS

Updating driver script for testing on python 3 version of checkBudget.py

Moving -j8 option to correct make call. Also changing mpi path from ending with _intel to ending with _ifort, since this is the correct name specified when installing mpi using the intel compiler.

Missed a space

Added backup_all_scripts_driver.bash script that has been being run on carson to the sys_admin repo #694

Updating larson-group.sh script to support newer pgi version and the intel mpi version #786

updated larson-grtoup paths file so oneapi mpi compiler works properly #786

updated the dynamic_ip script to python 3

updated the dynamic_ip script to python 3

updated broken url finder script to python 3 #693

updated test_bacula_restore.py script to python 3 #693

changed iptables patrol script to no longer not be able to find dropping messages #787

In python range(1,1) will cause the loop not to run at all, so when we only had 1 commit to check (1 commit on the previous day) the baseline would never be updated. This is just a bug, so we want to start the range at 0 and subtract 1 everywhere we see i to compensate, ensuring that the loop runs but that the elements checked remain the same.

Automated bacula config backup.

Added python script to convert netcdf files to csv files.

Removing most recently added files

removed old users from iptables hosts file and commited some code that I didnt commit 6 months ago.

Copies new branch to clubb_release

so that NCAR can include a bug fix for the monotonic flux limiter into CAM.

Updated dynamic_ip.py script to no longer hold onto users when the ip changes. I tested it if fairly rigorously, and it always deletes hosts when they are removed from hosts file, adds when they are added to the hosts file, and properly updates iptables rules when the host ip changes. #798

I just realized how outdated the hosts file is on sys_admin, so I am adding the updated one that is currently on malan.

Automated bacula config backup.

updating host repo update scripts to support commit logging from clubb #797

There was an branch that has been updated by this script for awhile, but has not been commited to the sys_admin repo. I am commiting this change now.

Making fixing change to make autoupdate message maker work properly

initially i had written these with python as the system to run the code. On malan, this was python version 3.9, on carson, it was python 2. This change will make it work properly

Added comments to git updates scripts effected by autocommit message maker changes

Added all python test suite configuration files to sys_admin to be
backup copies

contributes to #802

Added short bash script utility to add profile.d path updates to .bashrc
This is done so that paths will always be set no matter how a user logs
in.

Updated script with minor changes

Updating requirements docs in order to get rid of dependabot alrets.
Functions that use requirements still work with newer versions.

fixed bug in netcdf_install_script

adding current apache configurations to sys_admin

Update 000-default.conf

Updated root path to be consistent with previous setup.

Update clubb webpage README.md

Adding new install script

Tweaks to new script

Adding carson crontab to github

Update to install script

Adding some polish to install script

Removing the disable cxx, we do want mpicxx to be created now.

Updated update scripts and raw copy updater to use the commit message
generated by the autocommit message maker

Changed clubb morrison update to not use squash and message args in git subtree merge

Updating nightly test config to support newer configuration on carson

Automated nightly tests backup.

these are edited instal files for mpich and netcdf overseen and changes reccomened by gunther

Adds Gunther's openmp branch to clubb_release repo

Removing files we don't need, and making changes in carson's apache config to facilitate hosting both the larson-group site and jenkins. See https://github.com/larson-group/sys_admin/issues/828\#issuecomment-2125606960 for more detail.

Removing temp file