Console Output

Started by an SCM change
Obtained jenkins_tests/cam_gpu_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on mitch in /home/jenkins/workspace/cam_gpu_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_gpu_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 3435d5ba58c9bd61872a20bdde6ee02674328708 (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit cfd36718c8a48ad02f35a4805ebab6108914d470 Author: Benjamin A. Stephens Date: Tue Sep 23 09:54:36 2025 -0600 Adding expldiff budget terms for thlm and rtm (#1252) * Adding expldiff budget terms for thlm and rtm"
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 3435d5ba58c9bd61872a20bdde6ee02674328708 # timeout=10
 > git rev-list --no-walk 1644e80604055cf7a4910e9ace4213ac15f38fbf # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/ /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc/
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Running ne3 with OpenACC)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ run_scripts/run_cesm_uwm_coarse_res_gpu_no_silhs.sh
----- Case Setup -----
Compset longname is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam7 physics:
LND component is clm6.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_gpu_test/cime_config/config_pes.xml
Machine is larson-group
Pes setting: grid match    is a%ne3np4 
Pes setting: grid          is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 
Pes setting: compset       is 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM70_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP 
 Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] 
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-830-g3435d5ba5
Batch_system_type is none
 Creating Case directory /home/jenkins/cam_output/caseroot/UWM_ne3_gpu_no_stats_larson-group_nvhpc
ERROR: Unknown Job Queue specified use --force to set
Invalid permissions to create /home/pub/cam_inputdata
ERROR: inputdata root is not a directory or is not readable: /home/pub/cam_inputdata
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/cesm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/cesm.bldlog.*.gz: No such file or directory
[Pipeline] echo
WARNING: One or more of the build logs were not zipped, this means compilation did not finish
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/run/cesm.log.*.gz'
gzip: /home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/run/cesm.log.*.gz: No such file or directory
[Pipeline] echo
WARNING: One or more of the run logs were not zipped, this means the code did not run to completion
[Pipeline] sh
+ cat '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*'
cat: '/home/jenkins/cam_output/scratch/UWM_ne3_gpu_no_stats_larson-group_nvhpc/bld/atm.bldlog.*': No such file or directory
[Pipeline] echo
WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE