Console Output

Started by an SCM change
Obtained jenkins_tests/clubb_release_diff_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on nelson in /home/jenkins/workspace/clubb_release_diff_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_release_diff_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 3d5089d92afb342c7fb3337ebffc1128bb7f08f7 (refs/remotes/origin/master)
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 3d5089d92afb342c7fb3337ebffc1128bb7f08f7 # timeout=10
Commit message: "Nightly clubb plots (#1167)"
 > git rev-list --no-walk 46fe460263003ad92fd5f942a2c99d006bcbf0fa # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Clubb and Clubb_Release)
[Pipeline] sh
+ git clone https://github.com/larson-group/clubb.git
Cloning into 'clubb'...
+ git clone https://github.com/larson-group/clubb_release.git
Cloning into 'clubb_release'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Diff)
[Pipeline] sh
+ diff --exclude=.git --exclude=version_clubb_core.txt --exclude=version_silhs.txt -r clubb clubb_release
Only in clubb/jenkins_tests: clubb_ifort_debug_plot
Only in clubb_release/jenkins_tests: clubb_ifort_debug_run
Only in clubb/jenkins_tests: clubb_nvhpc_gpu_vs_cpu_plot
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/pyplotgen.py clubb_release/postprocessing/pyplotgen/pyplotgen.py
135d134
<         # Append date to output folder name
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/python_html_gallery/gallery.py clubb_release/postprocessing/pyplotgen/python_html_gallery/gallery.py
57c57
< def OrganizeRoot(output_folder,file_extension=".png"):
---
> def OrganizeRoot(output_dir,file_extension=".png"):
60c60
<     static_varbles.root = output_folder
---
>     static_varbles.root = output_dir
168c168
< def WriteGalleryPages(output_folder,multithreaded=False,file_extension=".png"):
---
> def WriteGalleryPages(multithreaded=False,file_extension=".png"):
171,172c171
<         output_name = str(output_folder).split('/')[-1]
<         index_file.write(static_varbles.header.replace("PyPlotgen Output",str(output_name)))
---
>         index_file.write(static_varbles.header)
222c221
< def main(output_folder, multithreaded=False, file_extension=".png"):
---
> def main(output_dir, multithreaded=False, file_extension=".png"):
224,225c223,224
<     OrganizeRoot(output_folder,file_extension)
<     WriteGalleryPages(output_folder,multithreaded=multithreaded,file_extension=file_extension)
---
>     OrganizeRoot(output_dir,file_extension)
>     WriteGalleryPages(multithreaded=multithreaded,file_extension=file_extension)
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/requirements.txt clubb_release/postprocessing/pyplotgen/requirements.txt
3c3
< matplotlib~=3.9.1
---
> matplotlib~=3.2.1
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/src/DataReader.py clubb_release/postprocessing/pyplotgen/src/DataReader.py
459c459
<             dependent_values[:] = np.nan # fill this array with nans since 0's imply the variable was 0 when instead it doesn't exist
---
>             dependent_values[:] = np.NaN # fill this array with nans since 0's imply the variable was 0 when instead it doesn't exist
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/src/interoperability.py clubb_release/postprocessing/pyplotgen/src/interoperability.py
41c41
<     return re.sub("\$[^$]*\$",'',string)
\ No newline at end of file
---
>     return re.sub('\$[^$]*\$','',string)
\ No newline at end of file
diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/src/SILHS/latin_hypercube_driver_module.F90 clubb_release/src/SILHS/latin_hypercube_driver_module.F90
561c561
<     r_status = curandGenerate(cu_gen, rand_pool(:,:,:,:), ngrdcol*num_samples*nz*(pdf_dim+d_uniform_extra))
---
>     r_status = curandGenerate(cu_gen, rand_pool(:,:,2:nz,:), ngrdcol*num_samples*(nz-1)*(pdf_dim+d_uniform_extra))
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE