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Started by an SCM change Obtained jenkins_tests/clubb_release_diff_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_release_diff_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_release_diff_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 8ab44c1c52fb945beb576d18e4bd78754b78e17f (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 8ab44c1c52fb945beb576d18e4bd78754b78e17f # timeout=10 Commit message: "QuadTune: Customizes inputs to threeDotFig." > git rev-list --no-walk 41a547a1afbbd334310b067c1a4789d4db831574 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Clubb and Clubb_Release) [Pipeline] sh + git clone https://github.com/larson-group/clubb.git Cloning into 'clubb'... + git clone https://github.com/larson-group/clubb_release.git Cloning into 'clubb_release'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Diff) [Pipeline] sh + diff --exclude=.git --exclude=version_clubb_core.txt --exclude=version_silhs.txt -r clubb clubb_release diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/utilities/sens_matrix/create_figs.py clubb_release/utilities/sens_matrix/create_figs.py 49,87d48 < # Remove selected metrics from plots < maskMetricsNames = (metricsNames == 'PRECT_GLB') | (metricsNames == 'LWCF_GLB') \ < | (metricsNames == 'SWCF_LBA') | (metricsNames == 'SWCF_EP') \ < | (metricsNames == 'SWCF_WP') | (metricsNames == 'SWCF_NP') \ < | (metricsNames == 'SWCF_VOCAL') | (metricsNames == 'SWCF_HAWAII') \ < | (metricsNames == 'SWCF_SP') | (metricsNames == 'SWCF_GLB') < < maskParamsNames = (paramsNames == 'clubb_c_k10') | (paramsNames == 'clubb_altitude_threshold') \ < | (paramsNames == 'clubb_c_invrs_tau_shear') | (paramsNames == 'clubb_c_invrs_tau_bkgnd') \ < | (paramsNames == 'clubb_c_invrs_tau_n2_wp2') | (paramsNames == 'clubb_c_invrs_tau_n2_wp2') \ < | (paramsNames == 'clubb_c_invrs_tau_n2') < < maskMetricsParamsNames = np.outer(maskMetricsNames,maskParamsNames) < < # #maskMetricsNames = np.logical_not(maskMetricsNames) # get rid of named elements < # Apply mask < metricsNamesMasked = np.ma.masked_array(metricsNames, maskMetricsNames).compressed() < paramsNamesMasked = np.ma.masked_array(paramsNames, maskParamsNames).compressed() < # normMetricValsColMasked = np.ma.masked_array(normMetricValsCol, maskMetricsNames).compressed() < # normMetricValsColMasked = normMetricValsColMasked[np.newaxis].T # turn into column array < # defaultBiasesColMasked = np.ma.masked_array(defaultBiasesCol, maskMetricsNames).compressed() < # defaultBiasesColMasked = defaultBiasesColMasked[np.newaxis].T < normMetricValsColMasked = normMetricValsCol[~maskMetricsNames] < defaultBiasesColMasked = defaultBiasesCol[~maskMetricsNames] < normlzdSensMatrixPolyMasked = normlzdSensMatrixPoly[~maskMetricsNames].T[~maskParamsNames].T < normlzdLinplusSensMatrixPolyMasked = normlzdLinplusSensMatrixPoly[~maskMetricsNames].T[~maskParamsNames].T < < metricsWeightsMasked = metricsWeights[~maskMetricsNames] < < obsMetricValsColMasked = obsMetricValsCol[~maskMetricsNames] < normlzdCurvMatrixMasked = normlzdCurvMatrix[~maskMetricsNames].T[~maskParamsNames].T < normlzdConstMatrixMasked = normlzdConstMatrix[~maskMetricsNames].T[~maskParamsNames].T < normlzdOrdDparamsMinMasked = normlzdOrdDparamsMin[~maskMetricsNames].T[~maskParamsNames].T < normlzdOrdDparamsMaxMasked = normlzdOrdDparamsMax[~maskMetricsNames].T[~maskParamsNames].T < < magParamValsRowMasked = magParamValsRow.T[~maskParamsNames].T < < sensNcFilenamesMasked = np.ma.masked_array(sensNcFilenames, maskParamsNames).compressed() < sensNcFilenamesExtMasked = np.ma.masked_array(sensNcFilenamesExt, maskParamsNames).compressed() 98,104d58 < # threeDotFig = \ < # createThreeDotFig(metricsNames, paramsNames, transformedParamsNames, < # metricsWeights, obsMetricValsCol, normMetricValsCol, magParamValsRow, < # normlzdCurvMatrix, normlzdSensMatrixPoly, normlzdConstMatrix, < # normlzdOrdDparamsMin, normlzdOrdDparamsMax, < # sensNcFilenames, sensNcFilenamesExt, defaultNcFilename) < 106,110c60,64 < createThreeDotFig(metricsNamesMasked, paramsNamesMasked, transformedParamsNames, < metricsWeightsMasked, obsMetricValsColMasked, normMetricValsColMasked, magParamValsRowMasked, < normlzdCurvMatrixMasked, normlzdSensMatrixPolyMasked, normlzdConstMatrixMasked, < normlzdOrdDparamsMinMasked, normlzdOrdDparamsMaxMasked, < sensNcFilenamesMasked, sensNcFilenamesExtMasked, defaultNcFilename) --- > createThreeDotFig(metricsNames, paramsNames, transformedParamsNames, > metricsWeights, obsMetricValsCol, normMetricValsCol, magParamValsRow, > normlzdCurvMatrix, normlzdSensMatrixPoly, normlzdConstMatrix, > normlzdOrdDparamsMin, normlzdOrdDparamsMax, > sensNcFilenames, sensNcFilenamesExt, defaultNcFilename) 277,278c231,241 < < --- > maskMetricsNames = np.logical_or(metricsNames[:] == 'PRECT_GLB', metricsNames[:] == 'LWCF_GLB') > # #maskMetricsNames = np.logical_not(maskMetricsNames) # get rid of named elements > # Apply mask > metricsNamesMasked = np.ma.masked_array(metricsNames, maskMetricsNames).compressed() > # normMetricValsColMasked = np.ma.masked_array(normMetricValsCol, maskMetricsNames).compressed() > # normMetricValsColMasked = normMetricValsColMasked[np.newaxis].T # turn into column array > # defaultBiasesColMasked = np.ma.masked_array(defaultBiasesCol, maskMetricsNames).compressed() > # defaultBiasesColMasked = defaultBiasesColMasked[np.newaxis].T > normMetricValsColMasked = normMetricValsCol[~maskMetricsNames] > defaultBiasesColMasked = defaultBiasesCol[~maskMetricsNames] > normlzdSensMatrixPolyMasked = normlzdSensMatrixPoly[~maskMetricsNames] 285c248 < createDpMin2PtFig( normlzdLinplusSensMatrixPolyMasked, defaultBiasesColMasked, --- > createDpMin2PtFig( normlzdSensMatrixPolyMasked, defaultBiasesColMasked, 520,523c483,486 < metricsWeights, obsMetricValsCol, normMetricValsCol, magParamValsRow, < normlzdCurvMatrix, normlzdSensMatrixPoly, normlzdConstMatrix, < normlzdOrdDparamsMin, normlzdOrdDparamsMax, < sens1NcFilenames, sens2NcFilenames, defaultNcFilename): --- > metricsWeights, obsMetricValsCol, normMetricValsCol, magParamValsRow, > normlzdCurvMatrix, normlzdSensMatrixPoly, normlzdConstMatrix, > normlzdOrdDparamsMin, normlzdOrdDparamsMax, > sens1NcFilenames, sens2NcFilenames, defaultNcFilename): 545,547c508,510 < # if ( len(paramsNames) != len(sens1NcFilenames) ): < # print("Number of parameters must equal number of netcdf files.") < # quit() --- > if ( len(paramsNames) != len(sens1NcFilenames) ): > print("Number of parameters must equal number of netcdf files.") > quit() 604c567 < marker=dict(color='black', size=16)), --- > marker=dict(color='black', size=5)), 625c588 < line=dict(color='blue', width=4)), --- > line=dict(color='blue', width=2)), 638c601 < line=dict(color='red', width=4)), --- > line=dict(color='red', width=2)), 648,649c611 < title_font_size=36, < #font=dict(size=50), --- > #title_font_size=8, 658d619 < title_font_size=36 662,663c623 < threeDotFig.update_yaxes(title_text=metricsNames[arrayRow], row=arrayRow+1, col=arrayCol+1, < title_font_size=36) --- > threeDotFig.update_yaxes(title_text=metricsNames[arrayRow], row=arrayRow+1, col=arrayCol+1) 1035c995 < title_text='Minimum size of parameter perturbation between 2 metrics', --- > title_text='dpMin between 2 metrics (i.e., rows of sens matrix)', [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE