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Started by an SCM change Obtained jenkins_tests/clubb_release_diff_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_release_diff_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_release_diff_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 616669cf5f2194502e9ecbafb2d267635d439c32 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 616669cf5f2194502e9ecbafb2d267635d439c32 # timeout=10 Commit message: "Updating pyplotgen to include a "contour" plot of rcm in the background. This will be made optional with the next commit." > git rev-list --no-walk db8ea9192a6aa0da6612223ebf569e46f293c92d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Clubb and Clubb_Release) [Pipeline] sh + git clone https://github.com/larson-group/clubb.git Cloning into 'clubb'... + git clone https://github.com/larson-group/clubb_release.git Cloning into 'clubb_release'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Diff) [Pipeline] sh + diff --exclude=.git --exclude=version_clubb_core.txt --exclude=version_silhs.txt -r clubb clubb_release Only in clubb/postprocessing/pyplotgen/config: VariableGroupBaseBudgetsLumpedBuoy.py diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/pyplotgen.py clubb_release/postprocessing/pyplotgen/pyplotgen.py 48c48 < plot_budgets=False, bu_morr=False, lumped_buoy_budgets=False, diff=None, show_alphabetic_id=False, --- > plot_budgets=False, bu_morr=False, diff=None, show_alphabetic_id=False, 88d87 < :param lumped_buoy_budgets: Lump together wpxp_bp and wpxp_pr3 terms in CLUBB's budgets 113d111 < self.lumped_buoy_budgets = lumped_buoy_budgets 420c418 < plot_subcolumns=self.plot_subcolumns, lumped_buoy_budgets=self.lumped_buoy_budgets, --- > plot_subcolumns=self.plot_subcolumns, 644,645d641 < parser.add_argument("--lumped-buoy-budgets", help="Lump together wpxp_bp and wpxp_pr3 terms in CLUBB's budgets.", < action="store_true") 799,800c795,796 < no_legends=args.no_legends, plot_budgets=args.plot_budgets, bu_morr=args.bu_morr, < lumped_buoy_budgets=args.lumped_buoy_budgets, diff=args.diff, show_alphabetic_id=args.show_alphabetic_id, --- > no_legends=args.no_legends, plot_budgets=args.plot_budgets, > bu_morr=args.bu_morr, diff=args.diff, show_alphabetic_id=args.show_alphabetic_id, diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/README.md clubb_release/postprocessing/pyplotgen/README.md 52d51 < | --lumped-buoy-budgets | Lump together wpxp_bp and wpxp_pr3 terms in CLUBB's budgets | diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/src/CaseGallerySetup.py clubb_release/postprocessing/pyplotgen/src/CaseGallerySetup.py 11d10 < from config.VariableGroupBaseBudgetsLumpedBuoy import VariableGroupBaseBudgetsLumpedBuoy 33,35c32,34 < plot_les=False, plot_budgets=False, lumped_buoy_budgets=False, plot_r408=False, plot_hoc=False, < e3sm_folders=[], cam_folders=[], time_height=False, animation=None, samstyle=False, < plot_subcolumns=False, image_extension=".png", total_panels_to_plot=0, priority_vars=False): --- > plot_les=False, plot_budgets=False, plot_r408=False, plot_hoc=False, e3sm_folders=[], cam_folders=[], > time_height=False, animation=None, samstyle=False, plot_subcolumns=False, image_extension=".png", > total_panels_to_plot=0, priority_vars=False): 49d47 < :param lumped_buoy_budgets: If True and if plot_budgets in true, wpxp_bp and wpxp_pr3 will be lumped into one budget term 68d65 < self.lumped_buoy_budgets = lumped_buoy_budgets 96d92 < self.lumped_buoy_budgets = False 164,169c160,161 < if not self.lumped_buoy_budgets: < budget_variables = VariableGroupBaseBudgets(self, priority_vars=self.priority_vars, < clubb_datasets={folder_name:self.clubb_datasets[input_folder]}) < else: < budget_variables = VariableGroupBaseBudgetsLumpedBuoy(self, priority_vars=self.priority_vars, < clubb_datasets={folder_name:self.clubb_datasets[input_folder]}) --- > budget_variables = VariableGroupBaseBudgets(self, priority_vars=self.priority_vars, > clubb_datasets={folder_name:self.clubb_datasets[input_folder]}) diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/src/Panel.py clubb_release/postprocessing/pyplotgen/src/Panel.py 34,35c34,35 < def __init__(self, plots, bkgrnd_rcm_tavg, altitude_bkgrnd_rcm, start_alt_idx, end_alt_idx, < panel_type="profile", title="Unnamed panel", dependent_title="dependent variable", sci_scale = None, centered = False): --- > def __init__(self, plots, panel_type="profile", title="Unnamed panel", dependent_title="dependent variable", > sci_scale = None, centered = False): 40,43d39 < :param bkgrnd_rcm_tavg: Time-average vertical profile of rcm that can be displayed in the background of plots. < :param altitude_bkgrnd_rcm: Heights corresponding with the background rcm profile. < :param start_alt_idx: Index of bkgrnd_rcm_tavg that corresponds with bottom of the plot. < :param end_alt_idx: Index of bkgrnd_rcm_tavg that corresponds with top of the plot. 54,57d49 < self.bkgrnd_rcm_tavg = bkgrnd_rcm_tavg < self.altitude_bkgrnd_rcm = altitude_bkgrnd_rcm < self.start_alt_idx = start_alt_idx < self.end_alt_idx = end_alt_idx 233,234c225 < #ax.legend(loc='center left', bbox_to_anchor=(1, 0.5)) < ax.legend(loc='upper right', bbox_to_anchor=(1, 1)) --- > ax.legend(loc='center left', bbox_to_anchor=(1, 0.5)) 248,262d238 < < # Background rcm contour plot < num_points = self.end_alt_idx - self.start_alt_idx + 1 < bkgrnd_rcm_tavg_contours = np.eye( num_points ) < for i in range(num_points): < for j in range(num_points): < bkgrnd_rcm_tavg_contours[i,j] = self.bkgrnd_rcm_tavg[self.start_alt_idx+i] < x_vector_contour = np.zeros( num_points ) < x_diff = xlim[1] - xlim[0] < x_interval = x_diff / ( num_points - 1 ) < for k in range(num_points): < x_vector_contour[k] = xlim[0] + float(k) * x_interval < plt.contourf( x_vector_contour, self.altitude_bkgrnd_rcm[self.start_alt_idx:self.end_alt_idx+1], bkgrnd_rcm_tavg_contours, < cmap=plt.set_cmap("cool") ) < plt.colorbar( label="rcm [kg/kg]", orientation="vertical" ) diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/postprocessing/pyplotgen/src/VariableGroup.py clubb_release/postprocessing/pyplotgen/src/VariableGroup.py 94,111d93 < if self.clubb_datasets is not None and len(self.clubb_datasets) != 0: < bkgrnd_rcm = np.squeeze( self.clubb_datasets[self.casename]['zt'].variables['rcm'] ) < self.altitude_bkgrnd_rcm = np.squeeze( self.clubb_datasets[self.casename]['zt'].variables['altitude'] ) < time_bkgrnd_rcm = np.squeeze( self.clubb_datasets[self.casename]['zt'].variables['time'] ) < start_time_seconds = 60.0 * self.start_time # self.start_time is in minutes, while time_bkgrnd_rcm is in seconds. < end_time_seconds = 60.0 * self.end_time # self.end_time is in minutes, while time_bkgrnd_rcm is in seconds. < start_time_idx, end_time_idx = DataReader.__getStartEndIndex__(time_bkgrnd_rcm, start_time_seconds, end_time_seconds) < self.start_alt_idx, self.end_alt_idx = DataReader.__getStartEndIndex__(self.altitude_bkgrnd_rcm, self.height_min_value, self.height_max_value) < nzt = np.shape(bkgrnd_rcm)[1] < self.bkgrnd_rcm_tavg = np.zeros(nzt) < for z_indx in range(nzt): < lev_sum = 0 < count = 0 < for t_indx in range(start_time_idx, end_time_idx): < lev_sum = lev_sum + bkgrnd_rcm[t_indx,z_indx] < count = count + 1 < self.bkgrnd_rcm_tavg[z_indx] = lev_sum / float(count) < 412,413c394,395 < panel = Panel(plotset, self.bkgrnd_rcm_tavg, self.altitude_bkgrnd_rcm, self.start_alt_idx, self.end_alt_idx, < title=title, dependent_title=axis_label, panel_type=panel_type, sci_scale=sci_scale, centered=centered) --- > panel = Panel(plotset, title=title, dependent_title=axis_label, panel_type=panel_type, > sci_scale=sci_scale, centered=centered) diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/src/CLUBB_core/advance_clubb_core_module.F90 clubb_release/src/CLUBB_core/advance_clubb_core_module.F90 986c986 < !$acc brunt_vaisala_freq_sqd_splat, & --- > !$acc brunt_vaisala_freq_sqd_plus, brunt_vaisala_freq_sqd_splat, & 1552d1551 < invrs_tau_wp3_zm(i,k) = invrs_tau_zm(i,k) 2903c2902 < !$acc brunt_vaisala_freq_sqd_splat, & --- > !$acc brunt_vaisala_freq_sqd_plus, brunt_vaisala_freq_sqd_splat, & diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/src/CLUBB_core/advance_helper_module.F90 clubb_release/src/CLUBB_core/advance_helper_module.F90 335c335 < !$acc lambda0_stability, Lscale_zm ) --- > !$acc brunt_vaisala_freq_sqd_plus, lambda0_stability, Lscale_zm ) 900,901c900,901 < !$acc Richardson_num, Cx_fnc_interp, Ri_zm, & < !$acc ddzt_um, ddzt_vm, shear_sqd, turb_freq_sqd, Lscale_zm, & --- > !$acc brunt_vaisala_freq_sqd_plus, Richardson_num, Cx_fnc_interp, & > !$acc Ri_zm, ddzt_um, ddzt_vm, shear_sqd, turb_freq_sqd, Lscale_zm, & diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/src/CLUBB_core/mixing_length.F90 clubb_release/src/CLUBB_core/mixing_length.F90 1586c1586 < brunt_vaisala_freq_sqd_smth = zm2zt2zm( nz,ngrdcol,gr, brunt_vaisala_freq_sqd_mixed ) --- > brunt_vaisala_freq_sqd_smth = zm2zt2zm( nz,ngrdcol,gr, brunt_vaisala_freq_sqd ) 1595c1595 < tmp_calc(i,k) = 1.e8_core_rknd * abs(brunt_vaisala_freq_sqd_mixed(i,k))**3 --- > tmp_calc(i,k) = 1.e8_core_rknd * abs(brunt_vaisala_freq_sqd(i,k))**3 1601c1601 < brunt_vaisala_freq_sqd_mixed, & --- > brunt_vaisala_freq_sqd, & 1612,1613c1612,1613 < brunt_vaisala_freq_clipped(i,k) = min( brunt_vaisala_freq_sqd_mixed(i,k), & < 1.e8_core_rknd * abs(brunt_vaisala_freq_sqd_mixed(i,k))**3) --- > brunt_vaisala_freq_clipped(i,k) = min( brunt_vaisala_freq_sqd(i,k), & > 1.e8_core_rknd * abs(brunt_vaisala_freq_sqd(i,k))**3) 1844c1844 < invrs_tau_xp2_zm(i,k) = invrs_tau_bkgnd(i,k) + invrs_tau_sfc(i,k) & --- > invrs_tau_xp2_zm(i,k) = 0.1_core_rknd * invrs_tau_bkgnd(i,k) + invrs_tau_sfc(i,k) & 1852,1861c1852,1861 < ! !$acc parallel loop gang vector collapse(2) default(present) < ! do k = 1, nz < ! do i = 1, ngrdcol < ! if ( ice_supersat_frac_zm(i,k) <= 0.01_core_rknd & < ! .and. invrs_tau_xp2_zm(i,k) >= 0.003_core_rknd ) then < ! invrs_tau_xp2_zm(i,k) = 0.003_core_rknd < ! end if < ! end do < ! end do < ! !$acc end parallel loop --- > !$acc parallel loop gang vector collapse(2) default(present) > do k = 1, nz > do i = 1, ngrdcol > if ( ice_supersat_frac_zm(i,k) <= 0.01_core_rknd & > .and. invrs_tau_xp2_zm(i,k) >= 0.003_core_rknd ) then > invrs_tau_xp2_zm(i,k) = 0.003_core_rknd > end if > end do > end do > !$acc end parallel loop diff '--exclude=.git' '--exclude=version_clubb_core.txt' '--exclude=version_silhs.txt' -r clubb/src/error.F90 clubb_release/src/error.F90 111c111 < character(len=20), dimension(:), allocatable, private :: & --- > character(len=10), dimension(:), allocatable, private :: & 290c290 < character(len=20), dimension(max_variables) :: & --- > character(len=10), dimension(max_variables) :: & 376c376 < t_variables(1:max_variables) = " " --- > t_variables(1:max_variables) = " " 423c423 < if (t_variables(i) == " ") exit --- > if (t_variables(i) == " ") exit [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE