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Started by user Peter Roels Checking out git https://github.com/larson-group/sam_clubb.git into /home/jenkins/workspace/branch_sam_test@script/8eae8d66d73008442543e13bda4bcc86d0ed492274bffa761cee9307d1eb89cb to read jenkins_tests/sam_clubb_pgi_build/Jenkinsfile The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/branch_sam_test@script/8eae8d66d73008442543e13bda4bcc86d0ed492274bffa761cee9307d1eb89cb # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9cb0c7312d9f7525696ee0fb605c83118548dc3d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9cb0c7312d9f7525696ee0fb605c83118548dc3d # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" > git rev-list --no-walk 209d71a426de0ff00b77e341eb0e4b37f27dcfaa # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_sam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/branch_sam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 9cb0c7312d9f7525696ee0fb605c83118548dc3d (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9cb0c7312d9f7525696ee0fb605c83118548dc3d # timeout=10 Commit message: "Autoupdated CLUBB files from Clubb's src/CLUBB_core" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Edit Makefile) [Pipeline] sh + sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 6,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + ./Build if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_2D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D mkdir /home/jenkins/workspace/branch_sam_test/OUT_2D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_3D ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D mkdir /home/jenkins/workspace/branch_sam_test/OUT_3D if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_STAT ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT mkdir /home/jenkins/workspace/branch_sam_test/OUT_STAT if ! ( -d /home/jenkins/workspace/branch_sam_test/OUT_MOVIES ) mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES mkdir /home/jenkins/workspace/branch_sam_test/OUT_MOVIES if ! ( -d /home/jenkins/workspace/branch_sam_test/RESTART ) mkdir /home/jenkins/workspace/branch_sam_test/RESTART mkdir /home/jenkins/workspace/branch_sam_test/RESTART if ! ( -d /home/jenkins/workspace/branch_sam_test/OBJ ) mkdir /home/jenkins/workspace/branch_sam_test/OBJ mkdir /home/jenkins/workspace/branch_sam_test/OBJ if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_2D OUT_2D if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_3D OUT_3D if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOMENTS OUT_MOMENTS if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_STAT OUT_STAT if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/branch_sam_test/OUT_MOVIES OUT_MOVIES if ! ( -d RESTART ) ln -s /home/jenkins/workspace/branch_sam_test/RESTART RESTART if ! ( -d OBJ ) ln -s /home/jenkins/workspace/branch_sam_test/OBJ OBJ cat if ( -e /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS ) then mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/branch_sam_test/OBJ/MICRO_RAD_OPTIONS cd /home/jenkins/workspace/branch_sam_test/OBJ if ( ! ( -e Filepath ) ) then cat endif gmake -j4 -f /home/jenkins/workspace/branch_sam_test/Makefile cat: Srcfiles: No such file or directory /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkSrcfiles > Srcfiles /home/jenkins/workspace/branch_sam_test/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends /opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfreeform -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/CLUBB/clubb_precision.F90; /opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90 -c -Mfixed -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//include -I/usr/local/NETCDF-Fortran-4.5.3-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/branch_sam_test/SRC/SIMULATORS/MISR_simulator.f gmake: /opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90: No such file or directory /bin/sh: 1: /opt/nvidia/hpc_sdk/Linux_x86_64/21.3/comm_libs/openmpi/openmpi-3.1.5//bin/mpif90: not found gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:699: clubb_precision.o] Error 127 gmake: *** Waiting for unfinished jobs.... gmake: *** [/home/jenkins/workspace/branch_sam_test/Makefile:701: MISR_simulator.o] Error 127 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + cat runsam.log cat: runsam.log: No such file or directory [Pipeline] echo SAM did not create a log. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE