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Started by user Peter Roels Checking out git https://github.com/larson-group/sam_clubb.git into /home/jenkins/workspace/branch_sam_test@script to read jenkins_tests/sam_micro_drizzle_intel_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_sam_test@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 1f154cc899f7b47b16b311194c10fc01c6465236 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 1f154cc899f7b47b16b311194c10fc01c6465236 # timeout=10 Commit message: "Adding new intel environment file to oth run and compile step. larson-group/sys_admin#750" > git rev-list --no-walk 9d5b2ff36fe5c591a59cb2c0e3bc6fa7118cdf69 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_sam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/sam_clubb.git > git init /home/jenkins/workspace/branch_sam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/sam_clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 1f154cc899f7b47b16b311194c10fc01c6465236 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 1f154cc899f7b47b16b311194c10fc01c6465236 # timeout=10 Commit message: "Adding new intel environment file to oth run and compile step. larson-group/sys_admin#750" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Setup LES_KK_micro) [Pipeline] sh + SCRIPTS/LES_setup/setup_LES_KK_micro.bash Setting up SAM for a LES using KK microphysics (MICRO_DRIZZLE) Reading the name of the case to be setup from /home/jenkins/workspace/branch_sam_test/CaseName Setting up the configuration for a LES using MICRO_DRIZZLE for DYCOMS_RF02 Copying the special domain file DYCOMS_RF02/domain.f90.les to SRC/domain.F90 ***** REMINDER: change nsubdomains_x and/or nsubdomains_y in SRC/domain.f90 when running in parallel ***** Using the current surface.F90 and nudging.F90 files Copying DYCOMS_RF02/prm to DYCOMS_RF02/prm.prev Copying DYCOMS_RF02/prm.les to DYCOMS_RF02/prm ***** REMINDER: change docloudsed and caseid in DYCOMS_RF02/prm to toggle the cloud water sedimentation setting ***** Copying DYCOMS_RF02/grd to DYCOMS_RF02/grd_prev Copying DYCOMS_RF02/grd_rev to DYCOMS_RF02/grd Copying Build to Build.prev Editing the Build file Case DYCOMS_RF02: Change MICRO_DIR and SGS_DIR in Build, remove CLUBB_DIR, SILHS_DIR, CLUBB_MICROPHYS_UTILS Copying Makefile to Makefile.prev Editing the Makefile ***** REMINDER: remember to comment/uncomment the Makefile for the type of compiler that you are using ***** Copying runsam.bash to runsam.bash.prev Editing runsam.bash ***** REMINDER: remember to comment/uncomment runsam.bash based on the compiler that was used. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Make File) [Pipeline] sh + vim Makefile '+%s/# {nightly intel} DO NOT REMOVE THIS LINE\n#ifeq ($(PLATFORM),Linux)\nifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly intel} DO NOT REMOVE THIS LINE\rifeq ($(PLATFORM),Linux)\r#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal [m[m[0m[H[2J[24;1H"Makefile" 707L, 22673C "Makefile" 707L, 22673C written + vim Makefile '+%s/# {nightly pgi} DO NOT REMOVE THIS LINE\nifeq ($(PLATFORM),Linux)\n#ifeq ($(PLATFORM),NOTNOT) # Change to line above to use/# {nightly pgi} DO NOT REMOVE THIS LINE\r#ifeq ($(PLATFORM),Linux)\rifeq ($(PLATFORM),NOTNOT) # Change to line above to use/g' +wqall Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal [m[m[0m[H[2J[24;1H"Makefile" 707L, 22673C "Makefile" 707L, 22673C written [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Edit Default Case) [Pipeline] sh + sed -i 's/nstop.*/nstop = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstat .*/nstat = 120,/g' DYCOMS_RF02/prm + sed -i 's/nstatfrq.*/nstatfrq = 1,/g' DYCOMS_RF02/prm [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source source /opt/intel/oneapi/setvars.sh --force /home/jenkins/workspace/branch_sam_test@tmp/durable-d2dbfb2d/script.sh: line 1: source: No such file or directory [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run SAM) Stage "Run SAM" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE