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Started by user Keegan Rhodes
Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script to read jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test@script/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/e3sm.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/stats_testing^{commit} # timeout=10
Checking out Revision a314824bfaf767c95b7f3a2bbb7b13e34c0bef72 (refs/remotes/origin/stats_testing)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a314824bfaf767c95b7f3a2bbb7b13e34c0bef72 # timeout=10
Commit message: "Commiting to test host models"
 > git rev-list --no-walk f770a0f47015ef4943a3f1877909cd5b837c9d3a # timeout=10
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/e3sm.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/stats_testing^{commit} # timeout=10
Checking out Revision a314824bfaf767c95b7f3a2bbb7b13e34c0bef72 (refs/remotes/origin/stats_testing)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a314824bfaf767c95b7f3a2bbb7b13e34c0bef72 # timeout=10
Commit message: "Commiting to test host models"
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Branch and Submodules)
[Pipeline] sh
+ rm -f /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.bldlog.210721-030455.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.bldlog.210721-030904.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.bldlog.210721-031313.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.210721-030757.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.210721-031206.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.210721-031614.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.210721-030455.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.210721-030904.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.210721-031313.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.210721-030757.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.210721-031206.gz /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.210721-031614.gz
+ git submodule init
+ git submodule update
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Modify Run Scripts)
[Pipeline] sh
+ sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh
+ sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh
+ sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run BOMEX)
[Pipeline] sh
+ source /opt/intel/bin/ifortvars.sh intel64
++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux
++ INTEL_TARGET_ARCH=
++ INTEL_TARGET_PLATFORM=linux
+++ uname
++ INTEL_HOST_PLATFORM=Linux
++ COMPILERVARS_ARGV=1
++ '[' 1 -eq 0 ']'
++ '[' 1 -gt 0 ']'
++ opt=intel64
++ case $opt in
++ INTEL_TARGET_ARCH=intel64
++ shift
++ '[' 0 -gt 0 ']'
++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']'
++ '[' linux = mac ']'
++ '[' 1 -eq 0 ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']'
++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64
+++ INST=/opt/intel
+++ DIR_DEBUGGER=/opt/intel/debugger_2019
+++ DIR_DOCUMENTATION=/opt/intel/documentation_2019
+++ '[' '!' -d /opt/intel ']'
+++ case "$(uname -sm)" in
++++ uname -sm
+++ DEBUGGERARCH=intel64
+++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']'
+++ case ${PATH} in
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -n en_US.UTF-8 ']'
+++ LANGUAGE_TERRITORY=en_US.UTF-8
+++ case ${LANGUAGE_TERRITORY} in
+++ LANGUAGE_TERRITORY=en
+++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']'
+++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']'
+++ '[' -n '' ']'
+++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/
+++ '[' -n '' ']'
+++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/
+++ '[' -n '' ']'
+++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']'
+++ '[' -n '' ']'
+++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/
+++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/
+++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']'
+++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']'
+++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man'
+++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man'
+++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/
+++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/
+++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']'
+++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin
+++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin
++++ uname -s
+++ '[' Linux '!=' Darwin ']'
+++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']'
+++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']'
+++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']'
++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64
+++ set_mkl_env intel64
+++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux
+++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl
+++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl
+++ __mkl_tmp_SCRIPT_NAME=mklvars.sh
+++ __mkl_tmp_MOD_NAME=mod
+++ __mkl_tmp_LP64_ILP64=
+++ __mkl_tmp_MOD=
+++ __mkl_tmp_TARGET_ARCH=
+++ __mkl_tmp_MKLVARS_VERBOSE=
+++ __mkl_tmp_BAD_SWITCH=
+++ '[' -z intel64 ']'
+++ '[' -n intel64 ']'
+++ '[' intel64 = ia32 ']'
+++ '[' intel64 = intel64 ']'
+++ __mkl_tmp_TARGET_ARCH=intel64
+++ shift
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ '[' -z intel64 ']'
+++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib
+++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib
+++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib
+++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include
+++ __subdir_arch_ia32=ia32_lin
+++ __subdir_arch_intel64=intel64_lin
+++ '[' intel64 = ia32 ']'
+++ '[' intel64 = intel64 ']'
+++ __target_arch_path=intel64_lin
+++ __tbb_path_arch=
+++ '[' -z '' ']'
+++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']'
+++ '[' intel64_lin = ia32_lin ']'
++++ set_tbb_path intel64_lin
++++ __tmp_target_arch_path=intel64_lin
+++++ get_tbb_library_directory
+++++ __tbb_tmp_lib_dir=gcc4.1
+++++ which gcc
+++++ '[' 0 -eq 0 ']'
++++++ gcc --version
++++++ grep gcc
++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*'
++++++ sed -e 's/^\ //'
+++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)'
+++++ '[' 0 -eq 0 ']'
++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+'
++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)'
+++++ __tbb_tmp_gcc_version=8.3.1
+++++ case "${__tbb_tmp_gcc_version}" in
+++++ __tbb_tmp_lib_dir=gcc4.7
+++++ echo gcc4.7
++++ __tmp_tbb_subdir=/gcc4.7
++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
+++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ __tmp_target_arch_path=intel64_lin
++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
+++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ __tmp_target_arch_path=intel64_lin
++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7
++++ '[' intel64_lin = ia32_lin ']'
++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
+++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
++++ set_nls_path intel64_lin
++++ __tmp_target_arch_path=intel64_lin
++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N
+++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N
+++ '[' '' = mod ']'
+++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
+++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
+++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include
+++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include
+++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig
+++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig
+++ '[' '' = verbose ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']'
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']'
++ '[' intel64 = intel64 -o '' = intel64 ']'
++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh
+++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi
+++ export I_MPI_ROOT
+++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']'
+++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin
+++ export PATH
+++ '[' -z '' ']'
+++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar
+++ export CLASSPATH
+++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']'
+++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ export LD_LIBRARY_PATH
+++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']'
+++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man'
+++ export MANPATH
+++ '[' -z '' ']'
+++ i_mpi_ofi_library_internal=1
+++ i_mpi_library_kind=
+++ '[' 0 -gt 0 ']'
+++ case "$i_mpi_library_kind" in
+++ case "$i_mpi_ofi_library_internal" in
+++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin
+++ export PATH
+++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ export LD_LIBRARY_PATH
+++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']'
+++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin
+++ export LIBRARY_PATH
+++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov
+++ export FI_PROVIDER_PATH
++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']'
++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux
+++ INTEL_INSTALL_DIR_ORIG=
+++ INTEL_NDK_DIR_ORIG=
+++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux
+++ NDK_DIR='<NDK_DIR>'
+++ NDK_ARCH=
++++ uname
+++ INTEL_HOST_PLATFORM=Linux
+++ '[' 2 -eq 0 ']'
+++ INTEL_TARGET_ARCH=intel64
+++ INTEL_TARGET_PLATFORM=linux
+++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']'
+++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin
+++ '[' intel64 = ia32 ']'
+++ '[' intel64 = intel64 ']'
+++ NDK_ARCH=x86_64
+++ '[' -n '' ']'
+++ export PATH
+++ '[' linux = android ']'
+++ unset ICCCFG
+++ unset ICPCCFG
+++ unset ICXCFG
+++ unset ICPXCFG
+++ unset XIARCFG
+++ unset XILDCFG
+++ unset INTEL_USE_ENVIRONMENT
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']'
+++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26
+++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']'
+++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']'
+++ '[' Linux = Darwin ']'
+++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']'
+++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib'
+++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']'
+++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']'
+++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']'
+++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']'
+++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N
+++ '[' intel64 = ia32 ']'
+++ '[' -z '' ']'
+++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses
+++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses
+++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']'
+++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']'
++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common
++++ pwd
+++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man'
+++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man'
+++ '[' -n ']'
+++ INSTALL_DIR=
+++ '[' -n ']'
+++ NDK_DIR=
+++ unset INTEL_INSTALL_DIR_ORIG
+++ unset INTEL_NDK_DIR_ORIG
+ bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh'
Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/config_compsets.xml
Automatically adding SIAC to compset
Automatically adding SESP to compset
Compset forcing is 
ATM component is cam5 physics:
LND component is clm4.5 physics:clm4.5 Satellite phenology:
ICE component is prescribed cice:
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
IAC component is Stub iac component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/allactive/config_pesall.xml
Machine is nelson
Pes setting: grid match    is a%ne16np4_ 
Pes setting: grid          is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 
Pes setting: compset       is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} 
Pes setting: threads     is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} 
Pes setting: rootpe      is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
 Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP 
 Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] 
No charge_account info available, using value from PROJECT
e3sm model version found: a314824
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts
ERROR: No variable BASELINE_ROOT found in case
ERROR: No variable CCSM_CPRNC found in case
setting case file to env_batch.xml
ERROR: No queues found
/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace
/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime/config/e3sm/machines/template.st_archive
Creating file case.st_archive
Creating file .case.run.sh
Creating user_nl_xxx files for components and cpl
If an old case build already exists, might want to run 'case.build --clean' before building
Generating component namelists as part of setup
Creating component namelists
  2021-07-21 14:48:21 atm
   Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml
  2021-07-21 14:48:21 lnd
   Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml
  2021-07-21 14:48:21 ice
   Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml
  2021-07-21 14:48:22 ocn
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml
  2021-07-21 14:48:22 rof
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml
  2021-07-21 14:48:22 glc
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml
  2021-07-21 14:48:22 wav
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml
  2021-07-21 14:48:22 iac
   Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 
  2021-07-21 14:48:22 esp
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml
  2021-07-21 14:48:22 cpl
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
You can now run './preview_run' to get more info on how your case will be run
Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts
sharedlib_only is False
model_only is False
Generating component namelists as part of build
Creating component namelists
  2021-07-21 14:48:24 atm
   Calling /home/jenkins/workspace/branch_e3sm_test/components/cam/cime_config/buildnml
  2021-07-21 14:48:24 lnd
   Calling /home/jenkins/workspace/branch_e3sm_test/components/clm/cime_config/buildnml
  2021-07-21 14:48:25 ice
   Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml
  2021-07-21 14:48:25 ocn
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps/docn/cime_config/buildnml
  2021-07-21 14:48:25 rof
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/srof/cime_config/buildnml
  2021-07-21 14:48:25 glc
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sglc/cime_config/buildnml
  2021-07-21 14:48:25 wav
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/swav/cime_config/buildnml
  2021-07-21 14:48:25 iac
   Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/siac/cime_config/buildnml 
  2021-07-21 14:48:25 esp
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps/sesp/cime_config/buildnml
  2021-07-21 14:48:25 cpl
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml
Finished creating component namelists
Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.210721-144824
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl
Component gptl build complete with 1 warnings
Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.210721-144824
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct
Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.210721-144824
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.210721-144824
   Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share
Component csm_share build complete with 4 warnings
         - Building atm Library 
Building atm with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210721-144824
         - Building lnd Library 
Building lnd with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd.bldlog.210721-144824
         - Building ice Library 
Building ice with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/ice.bldlog.210721-144824
         - Building ocn Library 
Building ocn with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/ocn.bldlog.210721-144824
         - Building rof Library 
Building rof with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/rof.bldlog.210721-144824
         - Building glc Library 
         - Building wav Library 
Building glc with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/glc.bldlog.210721-144824
Building wav with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/wav.bldlog.210721-144824
         - Building iac Library 
         - Building esp Library 
Building iac with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/iac.bldlog.210721-144824
Building esp with output to /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/esp.bldlog.210721-144824
sglc built in 0.510909 seconds
swav built in 0.517881 seconds
siac built in 0.533517 seconds
srof built in 0.548431 seconds
sesp built in 0.603893 seconds
docn built in 1.244990 seconds
Error: Missing actual argument for argument ‘stats_zt’ at (1)

Error: Missing actual argument for argument  stats_zt  at (1)

Component atm build complete with 4 warnings
Error: Missing actual argument for argument ‘stats_zt’ at (1)

Error: Missing actual argument for argument  stats_zt  at (1)

Component atm build complete with 4 warnings
cam built in 57.342864 seconds
Component ice build complete with 9 warnings
Component ice build complete with 9 warnings
cice built in 100.706293 seconds
Component lnd build complete with 6 warnings
Component lnd build complete with 6 warnings
clm built in 100.772753 seconds
ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210721-144824
The case.build step failed.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run DYCOMSrf01)
Stage "Run DYCOMSrf01" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run RICO)
Stage "Run RICO" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ cp 'projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.*' 'projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*' 'projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*' 'projects/scratch/SCM_runs/test_DYCOMSrf01/run/e3sm.log.*' /home/jenkins/test_logs/branch_e3sm_test
cp: target ‘/home/jenkins/test_logs/branch_e3sm_test’ is not a directory
[Pipeline] }
[Pipeline] // script
Error when executing always post condition:
hudson.AbortException: script returned exit code 1
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:659)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:605)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:549)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE