Console Output

Started by user unknown or anonymous
Restarted from build #80, stage Set Up Environment
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/branch_clubb_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_clubb_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/spack_updates^{commit} # timeout=10
Checking out Revision 7e7041313d635c438a9b0ad09c3403fdf6bc60f9 (refs/remotes/origin/spack_updates)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 7e7041313d635c438a9b0ad09c3403fdf6bc60f9 # timeout=10
Commit message: "test2"
 > git rev-list --no-walk bf1ec492143a835d0844394954a877b8d60aaa2a # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Set Up Environment)
[Pipeline] sh
+ source /etc/profile
++ '[' '' ']'
++ '[' -d /etc/profile.d ']'
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/01-locale-fix.sh ']'
++ . /etc/profile.d/01-locale-fix.sh
++++ /usr/bin/locale-check C.UTF-8
+++ eval
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/apps-bin-path.sh ']'
++ . /etc/profile.d/apps-bin-path.sh
+++ snap_bin_path=/snap/bin
+++ '[' -n '' ']'
+++ '[' -z /var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ ']'
+++ snap_xdg_path=/var/lib/snapd/desktop
+++ '[' -n /var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ ']'
+++ '[' -n /var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ ']'
+++ export XDG_DATA_DIRS=/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
+++ XDG_DATA_DIRS=/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/bash_completion.sh ']'
++ . /etc/profile.d/bash_completion.sh
+++ '[' 'x5.1.16(1)-release' '!=' x -a x '!=' x -a x = x ']'
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/cedilla-portuguese.sh ']'
++ . /etc/profile.d/cedilla-portuguese.sh
+++ '[' '' = pt -a en '!=' pt ']'
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/debuginfod.sh ']'
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/flatpak.sh ']'
++ . /etc/profile.d/flatpak.sh
+++ command -v flatpak
++++ unset G_MESSAGES_DEBUG
++++ echo /home/jenkins/.local/share/flatpak
++++ GIO_USE_VFS=local
++++ flatpak --installations
++++ new_dirs=
++++ read -r install_path
++++ share_path=/home/jenkins/.local/share/flatpak/exports/share
++++ case ":$XDG_DATA_DIRS:" in
++++ new_dirs=/home/jenkins/.local/share/flatpak/exports/share
++++ read -r install_path
++++ share_path=/var/lib/flatpak/exports/share
++++ case ":$XDG_DATA_DIRS:" in
++++ :
++++ read -r install_path
++++ echo /home/jenkins/.local/share/flatpak/exports/share
+++ new_dirs=/home/jenkins/.local/share/flatpak/exports/share
+++ export XDG_DATA_DIRS
+++ XDG_DATA_DIRS=/home/jenkins/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/gnome-session_gnomerc.sh ']'
++ . /etc/profile.d/gnome-session_gnomerc.sh
+++ '[' '' = wayland ']'
+++ '[' -z /home/jenkins/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop ']'
+++ '[' -n /home/jenkins/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop ']'
+++ XDG_DATA_DIRS=/usr/share/gnome:/home/jenkins/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
+++ export XDG_DATA_DIRS
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/im-config_wayland.sh ']'
++ . /etc/profile.d/im-config_wayland.sh
+++ '[' '' '!=' wayland ']'
+++ return
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/larson-group.sh ']'
++ . /etc/profile.d/larson-group.sh
+++ export PATH MANPATH LD_LIBRARY_PATH
+++ export SVNROOT=http://carson.math.uwm.edu/repos
+++ SVNROOT=http://carson.math.uwm.edu/repos
+++ export GIT_EDITOR=vi
+++ GIT_EDITOR=vi
+++ export SVN_EDITOR=vi
+++ SVN_EDITOR=vi
+++ export OMP_STACKSIZE=1048579
+++ OMP_STACKSIZE=1048579
+++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
+++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
+++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash
++++ '[' -z '' ']'
++++ case "$-" in
++++ __lmod_vx=x
++++ '[' -n x ']'
++++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
++++ unset __lmod_vx
+++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib'
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib'
+++ export GFORTRAN_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
+++ GFORTRAN_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
+++ export GFORTRAN_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
+++ GFORTRAN_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
+++ export GFORTRAN_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
+++ GFORTRAN_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib'
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib'
+++ export IFORT_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
+++ IFORT_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
+++ export IFORT_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
+++ IFORT_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
+++ export IFORT_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
+++ IFORT_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
+++ '[' -e /opt/intel/oneapi/setvars.sh ']'
++++ echo /opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
++++ sed s:/opt/intel/oneapi/intelpython/latest/bin::g
+++ export PATH=/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
+++ PATH=/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib'
+++ LD_LIBRARY_PATH='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib'
++++ uname -s
++++ uname -m
+++ export NVARCH=Linux_x86_64
+++ NVARCH=Linux_x86_64
+++ export NVCOMPILERS=/opt/nvidia/hpc_sdk
+++ NVCOMPILERS=/opt/nvidia/hpc_sdk
+++ export 'MANPATH=$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/Linux_x86_64/21.3/compilers/man:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/man'
+++ MANPATH='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/Linux_x86_64/21.3/compilers/man:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/man'
+++ export CUDADIR=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/cuda/
+++ CUDADIR=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/cuda/
+++ export PGIFORTRAN_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
+++ PGIFORTRAN_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
+++ export PGI_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
+++ PGI_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
+++ export PGI_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
+++ PGI_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
+++ export PATH=/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
+++ PATH=/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
+++ export PATH=/usr/lib/cuda/bin:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
+++ PATH=/usr/lib/cuda/bin:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/2024/compilers/bin
+++ export GNU_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
+++ GNU_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-gfortran
+++ export GNU_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
+++ GNU_NETCDF_C=/usr/local/NETCDF-C-4.8.0-gfortran
+++ export GNU_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
+++ GNU_MPICH=/usr/local/mpi/MPICH-3.3.1-gfortran
+++ export INTEL_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
+++ INTEL_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-ifort
+++ export INTEL_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
+++ INTEL_NETCDF_C=/usr/local/NETCDF-C-4.8.0-ifort
+++ export INTEL_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
+++ INTEL_MPICH=/usr/local/mpi/MPICH-3.3.1-intel
+++ export NVHPC_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
+++ NVHPC_MPICH=/opt/nvidia/hpc_sdk/Linux_x86_64/2024/comm_libs/openmpi/openmpi-3.1.5/
+++ export NVHPC_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
+++ NVHPC_NETCDF_FORTRAN=/usr/local/NETCDF-Fortran-4.5.3-pgi
+++ export NVHPC_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
+++ NVHPC_NETCDF_C=/usr/local/NETCDF-C-4.8.0-pgi
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/pop-im-ibus.sh ']'
++ . /etc/profile.d/pop-im-ibus.sh
+++ export GTK_IM_MODULE=ibus
+++ GTK_IM_MODULE=ibus
+++ export QT_IM_MODULE=ibus
+++ QT_IM_MODULE=ibus
+++ export XMODIFIERS=@im=ibus
+++ XMODIFIERS=@im=ibus
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/vte-2.91.sh ']'
++ . /etc/profile.d/vte-2.91.sh
+++ '[' -n '5.1.16(1)-release' -o -n '' ']'
+++ [[ ehxB == *i* ]]
+++ return 0
++ for i in /etc/profile.d/*.sh
++ '[' -r /etc/profile.d/xdg_dirs_desktop_session.sh ']'
++ . /etc/profile.d/xdg_dirs_desktop_session.sh
+++ DEFAULT_XDG_CONFIG_DIRS=/etc/xdg
+++ DEFAULT_XDG_DATA_DIRS=/usr/local/share/:/usr/share/
+++ '[' -n '' ']'
++ unset i
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Modify Config Flags)
[Pipeline] sh
+ sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:num_standalone_columns.*:num_standalone_columns = 32:g' input/tunable_parameters/configurable_model_flags.in
[Pipeline] sh
+ sed -i 's:time_final.*:time_final = 87600:g' input/case_setups/mpace_b_model.in
[Pipeline] sh
+ sed -i 's:time_final.*:time_final = 76200:g' input/case_setups/cobra_model.in
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile CPU)
[Pipeline] sh
+ compile/compile.bash -c config/linux_x86_64_nvhpc.bash
config/linux_x86_64_nvhpc.bash: line 34: nf-config: command not found
......................................................................................................................................................................... Make.clubb_lapack is ready.
..Sending interrupt signal to process
Aborted by unknown
................................................................................ Make.clubb_param is ready.
..Terminated
Terminated
... Make.microphys_utils is ready.
script returned exit code 143
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run CPU)
Stage "Run CPU" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile GPU_ACC)
Stage "Compile GPU_ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run GPU_ACC)
Stage "Run GPU_ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile GPU_OMP)
Stage "Compile GPU_OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run GPU_OMP)
Stage "Run GPU_OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compare CPU vs ACC)
Stage "Compare CPU vs ACC" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compare CPU vs OMP)
Stage "Compare CPU vs OMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: a98de22b-a3f3-4e2a-9691-527973c621cf
Finished: ABORTED