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Start of Pipeline - (24 min in block)
node - (24 min in block)
node block - (24 min in block)
stage - (1 sec in block)Declarative: Checkout SCM
stage block (Declarative: Checkout SCM) - (0.87 sec in block)
checkout - (0.79 sec in self)
withEnv - (24 min in block)GIT_BRANCH, GIT_COMMIT, GIT_PREVIOUS_COMMIT, GIT_URL
withEnv block - (24 min in block)
withEnv - (24 min in block)commit
withEnv block - (24 min in block)
stage - (32 sec in block)Checkout Externals and Copy Custom Files
stage block (Checkout Externals and Copy Custom Files) - (32 sec in block)
sh - (32 sec in self)python run_scripts/set_up_cam_coarse_res.py .
stage - (0.88 sec in block)Sed Commands
stage block (Sed Commands) - (0.73 sec in block)
sh - (0.33 sec in self)sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
sh - (0.32 sec in self)sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
stage - (1.2 sec in block)Remove Old Output
stage block (Remove Old Output) - (1.1 sec in block)
sh - (0.55 sec in self)rm -rf /home/jenkins/cam_output/scratch/test_scam_atex /home/jenkins/cam_output/scratch/test_scam_arm97
script - (0.48 sec in block)
script block - (0.39 sec in block)
sh - (0.31 sec in self)rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_arm97
stage - (10 min in block)Run atex
stage block (Run atex) - (10 min in block)
sh - (10 min in self)source /etc/profile.d/larson-group.sh run_scripts/run_scam.bash atex
stage - (11 min in block)Run arm97 with SILHS
stage block (Run arm97 with SILHS) - (11 min in block)
sh - (11 min in self)source /etc/profile.d/larson-group.sh # ulimit line is here so that we can override the default stack limit so that the program can write larger files properly ulimit -s 8388608 run_scripts/run_scam.bash -s arm97
stage - (1 min 26 sec in block)Compile and Run CLUBB
stage block (Compile and Run CLUBB) - (1 min 26 sec in block)
sh - (1 min 26 sec in self)source /etc/profile.d/larson-group.sh module load intel netcdf-fortran rm -rf clubb; git clone https://github.com/larson-group/clubb clubb/compile/compile.bash -c config/linux_x86_64_ifort.bash clubb/run_scripts/run_scm.bash atex mv clubb/output CLUBB
stage - (13 sec in block)Plot
stage block (Plot) - (13 sec in block)
sh - (0.36 sec in self)mkdir CAM_CLUBB
sh - (0.36 sec in self)mv /home/jenkins/cam_output/scratch/test_scam_atex/run/*.cam.h0i.* CAM_CLUBB/atex_cam.nc
sh - (10 sec in self)clubb/postprocessing/pyplotgen/pyplotgen.py -r -l --cam CAM_CLUBB --clubb CLUBB -o ${commit}
sh - (0.35 sec in self)echo ${GIT_BRANCH#*/} > ${commit}/branch
sh - (0.88 sec in self)scp -r ${commit} carson:/home/pub/cam_clubb_plots/
sh - (0.58 sec in self)ssh carson '/home/pub/create_plot_list.py /home/pub/cam_clubb_plots/'
stage - (4 sec in block)Declarative: Post Actions
stage block (Declarative: Post Actions) - (3.9 sec in block)
script - (3.7 sec in block)
script block - (3.6 sec in block)
sh - (0.35 sec in self)chmod -R 755 /home/jenkins/cam_output/
sh - (0.48 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz cat /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*
sh - (0.36 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.*.gz cat /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.*
sh - (0.39 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/run/atm.log.*.gz cat /home/jenkins/cam_output/scratch/test_scam_atex/run/atm.log.*
sh - (0.35 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_atex/run/cesm.log.*.gz cat /home/jenkins/cam_output/scratch/test_scam_atex/run/cesm.log.*
sh - (0.48 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz cat /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*
sh - (0.36 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/bld/cesm.bldlog.*.gz cat /home/jenkins/cam_output/scratch/test_scam_arm97/bld/cesm.bldlog.*
sh - (0.43 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/run/atm.log.*.gz cat /home/jenkins/cam_output/scratch/test_scam_arm97/run/atm.log.*
sh - (0.33 sec in self)gzip -d /home/jenkins/cam_output/scratch/test_scam_arm97/run/cesm.log.*.gz cat /home/jenkins/cam_output/scratch/test_scam_arm97/run/cesm.log.*