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Started by user Keegan Rhodes Checking out git https://github.com/larson-group/cam.git into /home/jenkins/workspace/branch_cam_test@script to read jenkins_tests/cam_run_intel_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/stats_to_hosts^{commit} # timeout=10 Checking out Revision ac5efa4ae0de33fc55cddd6eb7bf16452a9a5f0f (refs/remotes/origin/stats_to_hosts) > git config core.sparsecheckout # timeout=10 > git checkout -f ac5efa4ae0de33fc55cddd6eb7bf16452a9a5f0f # timeout=10 Commit message: "Fixing compiliation errors" > git rev-list --no-walk 1666f7d100c3e2bb1bd459f75a708d3243ab59a1 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_cam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_cam_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/stats_to_hosts^{commit} # timeout=10 Checking out Revision ac5efa4ae0de33fc55cddd6eb7bf16452a9a5f0f (refs/remotes/origin/stats_to_hosts) > git config core.sparsecheckout # timeout=10 > git checkout -f ac5efa4ae0de33fc55cddd6eb7bf16452a9a5f0f # timeout=10 Commit message: "Fixing compiliation errors" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Check out externals) [Pipeline] sh + python manage_externals/checkout_externals -e Externals.cfg Processing externals description file : Externals.cfg Processing externals description file : Externals_CLM.cfg Processing externals description file : Externals_CISM.cfg Processing externals description file : Externals_CAM.cfg Checking status of externals: clm, fates, ptclm, mosart, ww3, cime, cice, cism, source_cism, rtm, cam, carma, cosp2, chem_proc, e- ./chem_proc M ./cime ./components/cice ./components/cism ./components/cism/source_cism ./components/clm ./components/clm/src/fates ./components/clm/tools/PTCLM ./components/mosart ./components/rtm ./components/ww3 e- ./src/physics/carma/base e- ./src/physics/cosp2/src ---------------------------------------------------------------------- The external repositories labeled with 'M' above are not in a clean state. The following are two options for how to proceed: (1) Go into each external that is not in a clean state and issue either an 'svn status' or a 'git status' command. Either revert or commit your changes so that all externals are in a clean state. (Note, though, that it is okay to have untracked files in your working directory.) Then rerun checkout_externals. (2) Alternatively, you do not have to rely on checkout_externals. Instead, you can manually update out-of-sync externals (labeled with 's' above) as described in the configuration file Externals.cfg. The external repositories labeled with '?' above are not under version control using the expected protocol. If you are sure you want to switch protocols, and you don't have any work you need to save from this directory, then run "rm -rf [directory]" before re-running the checkout_externals tool. ---------------------------------------------------------------------- [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Copy Config Files) [Pipeline] sh + cp -rf cime_config_cesm_machines_files/config_machines.xml cime/config/cesm/machines/config_machines.xml + cp -rf cime_config_cesm_machines_files/config_compilers.xml cime/config/cesm/machines/config_compilers.xml [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_atex /home/jenkins/cam_output/scratch/test_scam_arm97 [Pipeline] script [Pipeline] { [Pipeline] sh + rm -rf /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_arm97 [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run atex) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ sed -e 's/^\ //' ++++++ grep gcc ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='<NDK_DIR>' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '<NDK_DIR>/platforms/android-26/arch-x86_64' ']' +++ '[' -d '<NDK_DIR>/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + run_scripts/run_scam.bash atex ----- Case Setup ----- Compset longname is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 5 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_cam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is SSTICE_DATA_FILENAME and value is $DIN_LOC_ROOT/atm/cam/sst/sst_HadOIBl_bc_1x1_2000climo_c180511.nc Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is nelson Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_ICE': -1, 'NTASKS_CPL': -1, 'NTASKS_LND': -1, 'NTASKS_WAV': -1, 'NTASKS_ROF': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv', 'dart'] No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_clubb_silhs_0fb1439_20200220-487-gac5efa4 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex This component includes user_mods /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex Adding user mods directory /home/jenkins/workspace/branch_cam_test/cime_config/usermods_dirs/scam_atex RUN: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex/shell_commands FROM: /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_cam_test/cime/config/cesm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_cam_test/cime/config/cesm/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-07-26 11:20:00 atm Calling /home/jenkins/workspace/branch_cam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/branch_cam_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in 2021-07-26 11:20:00 lnd Calling /home/jenkins/workspace/branch_cam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2021-07-26 11:20:00 ice Calling /home/jenkins/workspace/branch_cam_test/components/cice//cime_config/buildnml ...buildnml calling cice buildcpp to set build time options 2021-07-26 11:20:00 ocn Calling /home/jenkins/workspace/branch_cam_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-26 11:20:00 rof Calling /home/jenkins/workspace/branch_cam_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-26 11:20:00 glc Calling /home/jenkins/workspace/branch_cam_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-26 11:20:00 wav Calling /home/jenkins/workspace/branch_cam_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-26 11:20:00 iac Running /home/jenkins/workspace/branch_cam_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-26 11:20:01 esp Calling /home/jenkins/workspace/branch_cam_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-26 11:20:01 cpl Calling /home/jenkins/workspace/branch_cam_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building mpi-serial with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/mpi-serial.bldlog.210726-112000 Calling /home/jenkins/workspace/branch_cam_test/cime/src/build_scripts/buildlib.mpi-serial Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/gptl.bldlog.210726-112000 Calling /home/jenkins/workspace/branch_cam_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/mct.bldlog.210726-112000 Calling /home/jenkins/workspace/branch_cam_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/pio.bldlog.210726-112000 Calling /home/jenkins/workspace/branch_cam_test/cime/src/build_scripts/buildlib.pio Sending interrupt signal to process Aborted by Keegan Rhodes Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/csm_share.bldlog.210726-112000 Calling /home/jenkins/workspace/branch_cam_test/cime/src/build_scripts/buildlib.csm_share run_scripts/run_scam.bash: line 100: 52427 Terminated ./case.build Error building CAM script returned exit code 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run arm97 with SILHS) Stage "Run arm97 with SILHS" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output/ [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: ABORTED